Works by de Beer, Dirk

Results: 116

Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments.

Published in:

PLoS Biology, 2007, v. 5, n. 9, p. e230, doi. 10.1371/journal.pbio.0050230

By:

Mußmann, Marc;
Hu, Fen Z.;
Richter, Michael;
de Beer, Dirk;
Preisler, André;
Jørgensen, Bo B.;
Huntemann, Marcel;
Glöckner, Frank Oliver;
Amann, Rudolf;
Koopman, Werner J. H.;
Lasken, Roger S.;
Janto, Benjamin;
Hogg, Justin;
Stoodley, Paul;
Boissy, Robert;
Ehrlich, Garth D.

Publication type:

Article

Microscale profiling of photosynthesis-related variables in a highly productive biofilm photobioreactor.

Published in:

Biotechnology & Bioengineering, 2016, v. 113, n. 5, p. 1046, doi. 10.1002/bit.25867

By:

Li, Tong;
Piltz, Bastian;
Podola, Björn;
Dron, Anthony;
de Beer, Dirk;
Melkonian, Michael

Publication type:

Article

Effect of nitrite and nitrate on in situ sulfide production in an activated sludge immobilized agar gel film as determined by use of microelectrodes.

Published in:

Biotechnology & Bioengineering, 2003, v. 81, n. 5, p. 570, doi. 10.1002/bit.10495

By:

Okabe, Satoshi;
Santegoeds, Cecilia M.;
De Beer, Dirk

Publication type:

Article

Successional development of sulfate-reducing bacterial populations and their activities in an activated sludge immobilized agar gel film.

Published in:

Biotechnology & Bioengineering, 2002, v. 78, n. 2, p. 119, doi. 10.1002/bit.10240

By:

Okabe, Satoshi;
Santegoeds, Cecilia M.;
Watanabe, Yoshimasa;
Beer, Dirk de

Publication type:

Article

Evidence of nitrification and denitrification in high and low microbial abundance sponges.

Published in:

Marine Biology, 2010, v. 157, n. 3, p. 593, doi. 10.1007/s00227-009-1344-5

By:

Schläppy, Marie-Lise;
Schöttner, Sandra I.;
Lavik, Gaute;
Kuypers, Marcel M. M.;
de Beer, Dirk;
Hoffmann, Friederike

Publication type:

Article

High Nitrification Rate at Low pH in a Fluidized Bed Reactor with either Chalk or Sintered Glass as the Biofilm Carrier

Published in:

Israel Journal of Chemistry, 2006, v. 46, n. 1, p. 53, doi. 10.1560/6A0G-9AK4-6LXU-F7C7

By:

Green, Michal;
Beliavski, Michael;
Enekamp, Nadavd;
Gieseke, Armin;
de Beer, Dirk;
Tarrea, Sheldon

Publication type:

Article

OXYGEN MICROSENSOR STUDIES ON ZOOXANTHELLATE CLIONAID SPONGES FROM THE COSTA BRAVA, MEDITERRANEAN SEA.

Published in:

Journal of Phycology, 2005, v. 41, n. 4, p. 774, doi. 10.1111/j.0022-3646.2005.04226.x

By:

Schönberg, Christine Hanna Lydia;
de Beer, Dirk;
Lawton, Angela

Publication type:

Article

Biotic and abiotic oxidation and reduction of iron at circumneutral pH are inseparable processes under natural conditions.

Published in:

Geomicrobiology Journal, 2015, v. 32, n. 3/4, p. 221, doi. 10.1080/01490451.2014.887393

By:

Ionescu, Danny;
Heim, Christine;
Polerecky, Lubos;
Thiel, Volker;
de Beer, Dirk

Publication type:

Article

Diversity of Iron Oxidizing and Reducing Bacteria in Flow Reactors in the Äspö Hard Rock Laboratory.

Published in:

Geomicrobiology Journal, 2015, v. 32, n. 3/4, p. 207, doi. 10.1080/01490451.2014.884196

By:

Ionescu, Danny;
Heim, Christine;
Polerecky, Lubos;
Ramette, Alban;
Haeusler, Stefan;
Bizic-Ionescu, Mina;
Thiel, Volker;
de Beer, Dirk

Publication type:

Article

Functional-Structural Analysis of Nitrogen-Cycle Bacteria in a Hypersaline Mat from the Omani Desert.

Published in:

Geomicrobiology Journal, 2015, v. 32, n. 2, p. 119, doi. 10.1080/01490451.2014.932033

By:

Abed, Raeid M. M.;
de Beer, Dirk;
Stief, Peter

Publication type:

Article

Photosynthesis, Respiration and Exopolymer Calcium-Binding in Biofilm Calcification (Westerhöfer and Deinschwanger Creek, Germany).

Published in:

Geomicrobiology Journal, 2008, v. 25, n. 2, p. 83, doi. 10.1080/01490450801934888

By:

Shiraishi, Fumito;
Bissett, Andrew;
de Beer, Dirk;
Reimer, Andreas;
Arp, Gernot

Publication type:

Article

Telomeres and prognosis in patients with chronic lymphocytic leukaemia.

Published in:

2011

By:

Sellmann, Ludger;
Beer, Dirk;
Bartels, Marius;
Opalka, Bertram;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Seifert, Marc;
Siemer, Dörte;
Küppers, Ralf;
Baerlocher, Gabriela;
Röth, Alexander;
de Beer, Dirk;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Siemer, Dörte;
Küppers, Ralf;
Baerlocher, Gabriela M;
Röth, Alexander

Publication type:

journal article

Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink.

Published in:

2006

By:

Niemann, Helge;
Lösekann, Tina;
de Beer, Dirk;
Elvert, Marcus;
Nadalig, Thierry;
Knittel, Katrin;
Amann, Rudolf;
Sauter, Eberhard J.;
Schlüter, Michael;
Klages, Michael;
Foucher, Jean Paul;
Boetius, Antje

Publication type:

Letter

High temporal resolution of hydrogen peroxide (H2O2) dynamics during heat stress does not support a causative role in coral bleaching.

Published in:

Coral Reefs, 2024, v. 43, n. 1, p. 119, doi. 10.1007/s00338-023-02448-7

By:

Schlotheuber, Marlen;
Voolstra, Christian R.;
de Beer, Dirk;
Camp, Emma F.;
Klatt, Judith M.;
Ghilardi, Mattia;
Neumüller, Katharina;
Ousley, Sara;
Bejarano, Sonia

Publication type:

Article

Nitrogen fixation and diversity of benthic cyanobacterial mats on coral reefs in Curaçao.

Published in:

Coral Reefs, 2018, v. 37, n. 3, p. 861, doi. 10.1007/s00338-018-1713-y

By:

Haan, Joost den;
de Beer, Dirk;
Brocke, Hannah J.;
Piltz, Bastian;
Herz, Nicole;
Nugues, Maggy M.;
Abed, Raeid M. M.;
Palinska, Katarzyna A.;
John, Uwe

Publication type:

Article

In situ substrate conversion and assimilation by nitrifying bacteria in a model biofilm.

Published in:

Environmental Microbiology, 2005, v. 7, n. 9, p. 1392, doi. 10.1111/j.1462-2920.2005.00826.x

By:

Gieseke, Armin;
Nielsen, Jeppe Lund;
Amann, Rudolf;
Nielsen, Per Halkjær;
de Beer, Dirk

Publication type:

Article

In situ distribution and activity of nitrifying bacteria in freshwater sediment.

Published in:

Environmental Microbiology, 2003, v. 5, n. 9, p. 798, doi. 10.1046/j.1469-2920.2003.00469.x

By:

Altmann, Dörte;
Stief, Peter;
Amann, Rudolf;
de Beer, Dirk;
Schramm, Andreas

Publication type:

Article

Metabolic shifts in hypersaline microbial mats upon addition of organic substrates.

Published in:

Environmental Microbiology, 2002, v. 4, n. 11, p. 683, doi. 10.1046/j.1462-2920.2002.00356.x

By:

Grötzschel, Stefan;
Abed, Raeid M. M.;
de Beer, Dirk

Publication type:

Article

Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm.

Published in:

Environmental Microbiology, 2000, v. 2, n. 6, p. 680, doi. 10.1046/j.1462-2920.2000.00150.x

By:

Schramm, Andreas;
De Beer, Dirk;
Gieseke, Armin;
Amann, Rudolf

Publication type:

Article

Correction to: Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

2020

By:

Khosravi, Yalda;
Kandukuri, Rala D. P.;
Palmer, Sara R.;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Correction Notice

Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

BMC Oral Health, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12903-020-01217-0

By:

Khosravi, Yalda;
Kandukuri, Raja Durga Prasad;
Palmer, Sara;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Article

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-35

By:

Stief, Peter;
Fuchs-Ocklenburg, Silvia;
Kamp, Anja;
Manohar, Cathrine-Sumathi;
Houbraken, Jos;
Boekhout, Teun;
de Beer, Dirk;
Stoeck, Thorsten

Publication type:

Article

The role of nitric-oxide-synthase-derived nitric oxide in multicellular traits of Bacillus subtilis 3610: biofilm formation, swarming, and dispersal.

Published in:

BMC Microbiology, 2011, v. 11, n. 1, p. 111, doi. 10.1186/1471-2180-11-111

By:

Schreiber, Frank;
Beutler, Martin;
Enning, Dennis;
Lamprecht-Grandio, María;
Zafra, Olga;
González-Pastor, José Eduardo;
Beer, Dirk de

Publication type:

Article

The response of seagrass (Posidonia oceanica) meadow metabolism to CO2 levels and hydrodynamic exchange determined with aquatic eddy covariance.

Published in:

Biogeosciences Discussions, 2018, p. 1, doi. 10.5194/bg-2018-199

By:

Koopmans, Dirk;
Holtappels, Moritz;
Chennu, Arjun;
Weber, Miriam;
de Beer, Dirk

Publication type:

Article

Microsensor for radioactivity.

Published in:

Journal of Labelled Compounds & Radiopharmaceuticals, 2007, v. 50, n. 5/6, p. 492, doi. 10.1002/jlcr.1215

By:

Filthuth, Heinz;
Eickert, Gabriele;
Färber, Paul;
Jonkers, Henk;
Polerecky, Lubos;
de Beer, Dirk

Publication type:

Article

Colonies of marine cyanobacteria Trichodesmium interact with associated bacteria to acquire iron from dust.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0534-z

By:

Basu, Subhajit;
Gledhill, Martha;
de Beer, Dirk;
Prabhu Matondkar, S. G.;
Shaked, Yeala

Publication type:

Article

Advection Drives Nitrate Past the Microphytobenthos in Intertidal Sands, Fueling Deeper Denitrification.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.556268

By:

Schutte, Charles A.;
Huanca-Valenzuela, Paulina;
Lavik, Gaute;
Marchant, Hannah K.;
de Beer, Dirk

Publication type:

Article

Oxygenic and anoxygenic photosynthesis in a microbial mat from an anoxic and sulfidic spring.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1251, doi. 10.1111/1462-2920.13654

By:

de Beer, Dirk;
Weber, Miriam;
Chennu, Arjun;
Hamilton, Trinity;
Lott, Christian;
Macalady, Jennifer;
M. Klatt, Judith

Publication type:

Article

Shell biofilm-associated nitrous oxide production in marine molluscs: processes, precursors and relative importance.

Published in:

Environmental Microbiology, 2013, v. 15, n. 7, p. 1943, doi. 10.1111/j.1462-2920.2012.02823.x

By:

Heisterkamp, Ines M.;
Schramm, Andreas;
Larsen, Lone H.;
Svenningsen, Nanna B.;
Lavik, Gaute;
de Beer, Dirk;
Stief, Peter

Publication type:

Article

Vacuolar respiration of nitrate coupled to energy conservation in filamentous Beggiatoaceae.

Published in:

Environmental Microbiology, 2012, v. 14, n. 11, p. 2911, doi. 10.1111/j.1462-2920.2012.02851.x

By:

Beutler, Martin;
Milucka, Jana;
Hinck, Susanne;
Schreiber, Frank;
Brock, Jörg;
Mußmann, Marc;
Schulz-Vogt, Heide N.;
de Beer, Dirk

Publication type:

Article

Light utilization efficiency in photosynthetic microbial mats.

Published in:

Environmental Microbiology, 2012, v. 14, n. 4, p. 982, doi. 10.1111/j.1462-2920.2011.02676.x

By:

Al-Najjar, Mohammad A. A.;
de Beer, Dirk;
Kühl, Michael;
Polerecky, Lubos

Publication type:

Article

Vacuolated Beggiatoa-like filaments from different hypersaline environments form a novel genus.

Published in:

Environmental Microbiology, 2011, v. 13, n. 12, p. 3194, doi. 10.1111/j.1462-2920.2011.02513.x

By:

Hinck, Susanne;
Mußmann, Marc;
Salman, Verena;
Neu, Thomas R.;
Lenk, Sabine;
de Beer, Dirk;
Jonkers, Henk M.

Publication type:

Article

A novel, mat-forming Thiomargarita population associated with a sulfidic fluid flow from a deep-sea mud volcano.

Published in:

Environmental Microbiology, 2011, v. 13, n. 2, p. 495, doi. 10.1111/j.1462-2920.2010.02353.x

By:

Girnth, Anne-Christin;
Grünke, Stefanie;
Lichtschlag, Anna;
Felden, Janine;
Knittel, Katrin;
Wenzhöfer, Frank;
de Beer, Dirk;
Boetius, Antje

Publication type:

Article

Halotaxis of cyanobacteria in an intertidal hypersaline microbial mat.

Published in:

Environmental Microbiology, 2010, v. 12, n. 3, p. 567, doi. 10.1111/j.1462-2920.2009.02095.x

By:

Kohls, Katharina;
Abed, Raeid M. M.;
Polerecky, Lubos;
Weber, Miriam;
de Beer, Dirk

Publication type:

Article

Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain.

Published in:

Environmental Microbiology, 2007, v. 9, n. 8, p. 2007, doi. 10.1111/j.1462-2920.2007.01317.x

By:

Polerecky, Lubos;
Bachar, Ami;
Schoon, Raphaela;
Grinstein, Mor;
Jørgensen, Bo Barker;
de Beer, Dirk;
Jonkers, Henk M.

Publication type:

Article

Effect of salinity changes on the bacterial diversity, photosynthesis and oxygen consumption of cyanobacterial mats from an intertidal flat of the Arabian Gulf.

Published in:

Environmental Microbiology, 2007, v. 9, n. 6, p. 1384, doi. 10.1111/j.1462-2920.2007.01254.x

By:

Abed, Raeid M. M.;
Kohls, Katharina;
de Beer, Dirk

Publication type:

Article

Shorter telomeres correlate with an increase in the number of uniparental disomies in patients with chronic lymphocytic leukemia.

Published in:

Leukemia & Lymphoma, 2016, v. 57, n. 3, p. 590, doi. 10.3109/10428194.2015.1076929

By:

Sellmann, Ludger;
Scholtysik, Rene;
de Beer, Dirk;
Eisele, Lewin;
Klein-Hitpass, Ludger;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Röth, Alexander;
Baerlocher, Gabriela M.

Publication type:

Article

Longitudinal Telomere Erosion in Lymphocyte Subsets of Patients with Atherosclerotic Peripheral Arterial Disease (PAD).

Published in:

Journal of Clinical & Diagnostic Research, 2015, v. 9, n. 3, p. 1, doi. 10.7860/JCDR/2015/10931.5684

By:

DE BEER, DIRK;
VÖLZMANN, JAN;
KALKA, CHRISTOPH;
BAERLOCHER, GABRIELA M.

Publication type:

Article

Biotic Control of Surface pH and Evidence of Light-Induced H+ Pumping and Ca2+-H+ Exchange in a Tropical Crustose Coralline Alga.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159057

By:

Hofmann, Laurie C.;
Koch, Marguerite;
de Beer, Dirk

Publication type:

Article

Significantly shorter telomeres in T-cells of patients with ZAP-70+/CD38+ chronic lymphocytic leukaemia.

Published in:

British Journal of Haematology, 2008, v. 143, n. 3, p. 383, doi. 10.1111/j.1365-2141.2008.07363.x

By:

Röth, Alexander;
de Beer, Dirk;
Nückel, Holger;
Sellmann, Ludger;
Dührsen, Ulrich;
Dürig, Jan;
Baerlocher, Gabriela M.

Publication type:

Article

Cyanobacteria in Sulfidic Spring Microbial Mats Can Perform Oxygenic and Anoxygenic Photosynthesis Simultaneously during an Entire Diurnal Period.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01973

By:

Klatt, Judith M.;
de Beer, Dirk;
Häusler, Stefan;
Polerecky, Lubos

Publication type:

Article

Reactive oxygen species affect the potential for mineralization processes in permeable intertidal flats.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35818-4

By:

van Erk, Marit R.;
Bourceau, Olivia M.;
Moncada, Chyrene;
Basu, Subhajit;
Hansel, Colleen M.;
de Beer, Dirk

Publication type:

Article

Geochemical and microbiological fingerprinting of airborne dust that fell in Canberra, Australia, in October 2002.

Published in:

Geochemistry, Geophysics, Geosystems: G3, 2008, v. 9, n. 12, p. n/a, doi. 10.1029/2008GC002091

By:

De Deckker, Patrick;
Abed, Raeid M. M.;
de Beer, Dirk;
Hinrichs, Kai-Uwe;
O'Loingsigh, Tadhg;
Schefuß, Enno;
Stuut, Jan-Berend W.;
Tapper, Nigel J.;
van der Kaars, Sander

Publication type:

Article

Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0181531

By:

Guilini, Katja;
Weber, Miriam;
de Beer, Dirk;
Schneider, Matthias;
Molari, Massimiliano;
Lott, Christian;
Bodnar, Wanda;
Mascart, Thibaud;
De Troch, Marleen;
Vanreusel, Ann

Publication type:

Article

Tonsillolith: Not Just a Stone But a Living Biofilm

Published in:

2008

By:

Krespi, Yosef P.;
Arora, Anil;
Longwell, Mark;
Nistico, Laura;
Hall-Stoodley, Luanne;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Abstract

Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy.

Published in:

Biotechnology & Bioengineering, 1997, v. 53, n. 2, p. 151, doi. 10.1002/(SICI)1097-0290(19970120)53:2<151::AID-BIT4>3.0.CO;2-N

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Liquid flow in heterogeneous biofilms.

Published in:

Biotechnology & Bioengineering, 1994, v. 44, n. 5, p. 636, doi. 10.1002/bit.260440510

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Effects of biofilm structures on oxygen distribution and mass transport.

Published in:

Biotechnology & Bioengineering, 1994, v. 43, n. 11, p. 1131, doi. 10.1002/bit.260431118

By:

de Beer, Dirk;
Stoodley, Paul;
Roe, Frank;
Lewandowski, Zbigniew

Publication type:

Article

The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00075

By:

Teske, Andreas;
de Beer, Dirk;
McKay, Luke J.;
Tivey, Margaret K.;
Biddle, Jennifer F.;
Hoer, Daniel;
Lloyd, Karen G.;
Lever, Mark A.;
Røy, Hans;
Albert, Daniel B.;
Mendlovitz, Howard P.;
MacGregor, Barbara J.;
Holden, James F.;
Becker, Keir

Publication type:

Article

Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00459

By:

Buchmann, Bettina;
Häusler, Stefan;
de Beer, Dirk;
Ionescu, Danny;
Polerecky, Lubos;
Heim, Christine

Publication type:

Article