Works by de Beer, Dirk

Results: 115

Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments.

Published in:

PLoS Biology, 2007, v. 5, n. 9, p. e230, doi. 10.1371/journal.pbio.0050230

By:

Mußmann, Marc;
Hu, Fen Z.;
Richter, Michael;
de Beer, Dirk;
Preisler, André;
Jørgensen, Bo B.;
Huntemann, Marcel;
Glöckner, Frank Oliver;
Amann, Rudolf;
Koopman, Werner J. H.;
Lasken, Roger S.;
Janto, Benjamin;
Hogg, Justin;
Stoodley, Paul;
Boissy, Robert;
Ehrlich, Garth D.

Publication type:

Article

High Nitrification Rate at Low pH in a Fluidized Bed Reactor with either Chalk or Sintered Glass as the Biofilm Carrier

Published in:

Israel Journal of Chemistry, 2006, v. 46, n. 1, p. 53, doi. 10.1560/6A0G-9AK4-6LXU-F7C7

By:

Green, Michal;
Beliavski, Michael;
Enekamp, Nadavd;
Gieseke, Armin;
de Beer, Dirk;
Tarrea, Sheldon

Publication type:

Article

Planktonic Aggregates as Hotspots for Heterotrophic Diazotrophy: The Plot Thickens.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.875050

By:

Riemann, Lasse;
Rahav, Eyal;
Passow, Uta;
Grossart, Hans-Peter;
de Beer, Dirk;
Klawonn, Isabell;
Eichner, Meri;
Benavides, Mar;
Bar-Zeev, Edo

Publication type:

Article

Advection Drives Nitrate Past the Microphytobenthos in Intertidal Sands, Fueling Deeper Denitrification.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.556268

By:

Schutte, Charles A.;
Huanca-Valenzuela, Paulina;
Lavik, Gaute;
Marchant, Hannah K.;
de Beer, Dirk

Publication type:

Article

Correction to: Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

2020

By:

Khosravi, Yalda;
Kandukuri, Rala D. P.;
Palmer, Sara R.;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Correction Notice

Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

BMC Oral Health, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12903-020-01217-0

By:

Khosravi, Yalda;
Kandukuri, Raja Durga Prasad;
Palmer, Sara;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Article

The response of seagrass (Posidonia oceanica) meadow metabolism to CO2 levels and hydrodynamic exchange determined with aquatic eddy covariance.

Published in:

Biogeosciences Discussions, 2018, p. 1, doi. 10.5194/bg-2018-199

By:

Koopmans, Dirk;
Holtappels, Moritz;
Chennu, Arjun;
Weber, Miriam;
de Beer, Dirk

Publication type:

Article

Evidence of nitrification and denitrification in high and low microbial abundance sponges.

Published in:

Marine Biology, 2010, v. 157, n. 3, p. 593, doi. 10.1007/s00227-009-1344-5

By:

Schläppy, Marie-Lise;
Schöttner, Sandra I.;
Lavik, Gaute;
Kuypers, Marcel M. M.;
de Beer, Dirk;
Hoffmann, Friederike

Publication type:

Article

Colonies of marine cyanobacteria Trichodesmium interact with associated bacteria to acquire iron from dust.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0534-z

By:

Basu, Subhajit;
Gledhill, Martha;
de Beer, Dirk;
Prabhu Matondkar, S. G.;
Shaked, Yeala

Publication type:

Article

Calcification in free-living coralline algae is strongly influenced by morphology: Implications for susceptibility to ocean acidification.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90632-6

By:

Schubert, Nadine;
Hofmann, Laurie C.;
Almeida Saá, Antonella C.;
Moreira, Anderson Camargo;
Arenhart, Rafael Güntzel;
Fernandes, Celso Peres;
de Beer, Dirk;
Horta, Paulo A.;
Silva, João

Publication type:

Article

Shorter telomeres correlate with an increase in the number of uniparental disomies in patients with chronic lymphocytic leukemia.

Published in:

Leukemia & Lymphoma, 2016, v. 57, n. 3, p. 590, doi. 10.3109/10428194.2015.1076929

By:

Sellmann, Ludger;
Scholtysik, Rene;
de Beer, Dirk;
Eisele, Lewin;
Klein-Hitpass, Ludger;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Röth, Alexander;
Baerlocher, Gabriela M.

Publication type:

Article

Longitudinal Telomere Erosion in Lymphocyte Subsets of Patients with Atherosclerotic Peripheral Arterial Disease (PAD).

Published in:

Journal of Clinical & Diagnostic Research, 2015, v. 9, n. 3, p. 1, doi. 10.7860/JCDR/2015/10931.5684

By:

DE BEER, DIRK;
VÖLZMANN, JAN;
KALKA, CHRISTOPH;
BAERLOCHER, GABRIELA M.

Publication type:

Article

Denitrification in human dental plaque.

Published in:

BMC Biology, 2010, v. 8, p. 24, doi. 10.1186/1741-7007-8-24

By:

Schreiber, Frank;
Stief, Peter;
Gieseke, Armin;
Heisterkamp, Ines M.;
Verstraete, Willy;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Article

Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy.

Published in:

Biotechnology & Bioengineering, 1997, v. 53, n. 2, p. 151, doi. 10.1002/(SICI)1097-0290(19970120)53:2<151::AID-BIT4>3.0.CO;2-N

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Liquid flow in heterogeneous biofilms.

Published in:

Biotechnology & Bioengineering, 1994, v. 44, n. 5, p. 636, doi. 10.1002/bit.260440510

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Effects of biofilm structures on oxygen distribution and mass transport.

Published in:

Biotechnology & Bioengineering, 1994, v. 43, n. 11, p. 1131, doi. 10.1002/bit.260431118

By:

de Beer, Dirk;
Stoodley, Paul;
Roe, Frank;
Lewandowski, Zbigniew

Publication type:

Article

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.

Published in:

Nature, 2010, v. 464, n. 7288, p. 543, doi. 10.1038/nature08883

By:

Ettwig, Katharina F.;
Butler, Margaret K.;
Le Paslier, Denis;
Pelletier, Eric;
Mangenot, Sophie;
Kuypers, Marcel M. M.;
Schreiber, Frank;
Dutilh, Bas E.;
Zedelius, Johannes;
de Beer, Dirk;
Gloerich, Jolein;
Wessels, Hans J. C. T.;
van Alen, Theo;
Luesken, Francisca;
Wu, Ming L.;
van de Pas-Schoonen, Katinka T.;
Op den Camp, Huub J. M.;
Janssen-Megens, Eva M.;
Francoijs, Kees-Jan;
Stunnenberg, Henk

Publication type:

Article

Arctic Coralline Algae Elevate Surface pH and Carbonate in the Dark.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01416

By:

Hofmann, Laurie C.;
Schoenrock, Kathryn;
de Beer, Dirk

Publication type:

Article

Biotic Control of Surface pH and Evidence of Light-Induced H+ Pumping and Ca2+-H+ Exchange in a Tropical Crustose Coralline Alga.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159057

By:

Hofmann, Laurie C.;
Koch, Marguerite;
de Beer, Dirk

Publication type:

Article

High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1862, doi. 10.1038/ismej.2013.55

By:

Abed, Raeid M M;
Lam, Phyllis;
de Beer, Dirk;
Stief, Peter

Publication type:

Article

Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 3, p. 555, doi. 10.1038/ismej.2012.124

By:

Yanagawa, Katsunori;
Morono, Yuki;
de Beer, Dirk;
Haeckel, Matthias;
Sunamura, Michinari;
Futagami, Taiki;
Hoshino, Tatsuhiko;
Terada, Takeshi;
Nakamura, Ko-ichi;
Urabe, Tetsuro;
Rehder, Gregor;
Boetius, Antje;
Inagaki, Fumio

Publication type:

Article

Aerobic denitrification in permeable Wadden Sea sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 4, p. 776, doi. 10.1038/ismej.2010.166

By:

Gao, Hang;
Schreiber, Frank;
Collins, Gavin;
Jensen, Marlene M;
Kostka, Joel E;
Lavik, Gaute;
de Beer, Dirk;
Zhou, Huai-yang;
Kuypers, Marcel M M

Publication type:

Article

Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 8, p. 1031, doi. 10.1038/ismej.2010.23

By:

Grünke, Stefanie;
Lichtschlag, Anna;
Beer, Dirk de;
Kuypers, Marcel;
Lösekann-Behrens, Tina;
Ramette, Alban;
Boetius, Antje

Publication type:

Article

Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 3, p. 440, doi. 10.1038/ismej.2009.121

By:

Al-Najjar, Mohammad A. A.;
de Beer, Dirk;
Jørgensen, Bo Barker;
Kühl, Michael;
Polerecky, Lubos

Publication type:

Article

Aerobic denitrification in permeable Wadden Sea sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 3, p. 417, doi. 10.1038/ismej.2009.127

By:

Hang Gao;
Schreiber, Frank;
Collins, Gavin;
Jensen, Marlene M.;
Kostka, Joel E.;
Lavik, Gaute;
de Beer, Dirk;
Huai-yang Zhou;
Kuypers, Marcel M. M.

Publication type:

Article

Mechanisms of transient nitric oxide and nitrous oxide production in a complex biofilm.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 11, p. 1301, doi. 10.1038/ismej.2009.55

By:

Schreiber, Frank;
Loeffler, Birte;
Polerecky, Lubos;
Kuypers, Marcel M. M.;
De Beer, Dirk

Publication type:

Article

Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2007, v. 1, n. 4, p. 341, doi. 10.1038/ismej.2007.50

By:

Preisler, André;
de Beer, Dirk;
Lichtschlag, Anna;
Lavik, Gaute;
Boetius, Antje;
Jørgensen, Bo Barker

Publication type:

Article

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-35

By:

Stief, Peter;
Fuchs-Ocklenburg, Silvia;
Kamp, Anja;
Manohar, Cathrine-Sumathi;
Houbraken, Jos;
Boekhout, Teun;
de Beer, Dirk;
Stoeck, Thorsten

Publication type:

Article

The role of nitric-oxide-synthase-derived nitric oxide in multicellular traits of Bacillus subtilis 3610: biofilm formation, swarming, and dispersal.

Published in:

BMC Microbiology, 2011, v. 11, n. 1, p. 111, doi. 10.1186/1471-2180-11-111

By:

Schreiber, Frank;
Beutler, Martin;
Enning, Dennis;
Lamprecht-Grandio, María;
Zafra, Olga;
González-Pastor, José Eduardo;
Beer, Dirk de

Publication type:

Article

OXYGEN MICROSENSOR STUDIES ON ZOOXANTHELLATE CLIONAID SPONGES FROM THE COSTA BRAVA, MEDITERRANEAN SEA.

Published in:

Journal of Phycology, 2005, v. 41, n. 4, p. 774, doi. 10.1111/j.0022-3646.2005.04226.x

By:

Schönberg, Christine Hanna Lydia;
de Beer, Dirk;
Lawton, Angela

Publication type:

Article

High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem.

Published in:

Scientific Reports, 2015, p. 8852, doi. 10.1038/srep08852

By:

Brocke, Hannah J.;
Wenzhoefer, Frank;
de Beer, Dirk;
Mueller, Benjamin;
van Duyl, Fleur C.;
Nugues, Maggy M.

Publication type:

Article

Cyanobacteria in Sulfidic Spring Microbial Mats Can Perform Oxygenic and Anoxygenic Photosynthesis Simultaneously during an Entire Diurnal Period.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01973

By:

Klatt, Judith M.;
de Beer, Dirk;
Häusler, Stefan;
Polerecky, Lubos

Publication type:

Article

The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00075

By:

Teske, Andreas;
de Beer, Dirk;
McKay, Luke J.;
Tivey, Margaret K.;
Biddle, Jennifer F.;
Hoer, Daniel;
Lloyd, Karen G.;
Lever, Mark A.;
Røy, Hans;
Albert, Daniel B.;
Mendlovitz, Howard P.;
MacGregor, Barbara J.;
Holden, James F.;
Becker, Keir

Publication type:

Article

Telomeres and prognosis in patients with chronic lymphocytic leukaemia.

Published in:

2011

By:

Sellmann, Ludger;
Beer, Dirk;
Bartels, Marius;
Opalka, Bertram;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Seifert, Marc;
Siemer, Dörte;
Küppers, Ralf;
Baerlocher, Gabriela;
Röth, Alexander;
de Beer, Dirk;
Nückel, Holger;
Dührsen, Ulrich;
Dürig, Jan;
Siemer, Dörte;
Küppers, Ralf;
Baerlocher, Gabriela M;
Röth, Alexander

Publication type:

journal article

Tonsillolith: Not Just a Stone But a Living Biofilm

Published in:

2008

By:

Krespi, Yosef P.;
Arora, Anil;
Longwell, Mark;
Nistico, Laura;
Hall-Stoodley, Luanne;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Abstract

Metabolic shifts in hypersaline microbial mats upon addition of organic substrates.

Published in:

Environmental Microbiology, 2002, v. 4, n. 11, p. 683, doi. 10.1046/j.1462-2920.2002.00356.x

By:

Grötzschel, Stefan;
Abed, Raeid M. M.;
de Beer, Dirk

Publication type:

Article

Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm.

Published in:

Environmental Microbiology, 2000, v. 2, n. 6, p. 680, doi. 10.1046/j.1462-2920.2000.00150.x

By:

Schramm, Andreas;
De Beer, Dirk;
Gieseke, Armin;
Amann, Rudolf

Publication type:

Article

Geochemical and microbiological fingerprinting of airborne dust that fell in Canberra, Australia, in October 2002.

Published in:

Geochemistry, Geophysics, Geosystems: G3, 2008, v. 9, n. 12, p. n/a, doi. 10.1029/2008GC002091

By:

De Deckker, Patrick;
Abed, Raeid M. M.;
de Beer, Dirk;
Hinrichs, Kai-Uwe;
O'Loingsigh, Tadhg;
Schefuß, Enno;
Stuut, Jan-Berend W.;
Tapper, Nigel J.;
van der Kaars, Sander

Publication type:

Article

Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0181531

By:

Guilini, Katja;
Weber, Miriam;
de Beer, Dirk;
Schneider, Matthias;
Molari, Massimiliano;
Lott, Christian;
Bodnar, Wanda;
Mascart, Thibaud;
De Troch, Marleen;
Vanreusel, Ann

Publication type:

Article

Co‐acquisition of mineral‐bound iron and phosphorus by natural Trichodesmium colonies.

Published in:

Limnology & Oceanography, 2023, v. 68, n. 5, p. 1064, doi. 10.1002/lno.12329

By:

Shaked, Yeala;
de Beer, Dirk;
Wang, Siyuan;
Zhang, Futing;
Visser, Anna‐Neva;
Eichner, Meri;
Basu, Subhajit

Publication type:

Article

Impact of shallow‐water hydrothermal seepage on benthic biogeochemical cycling, nutrient availability, and meiobenthic communities in a tropical coral reef.

Published in:

Limnology & Oceanography, 2022, v. 67, n. 3, p. 567, doi. 10.1002/lno.12017

By:

Lichtschlag, Anna;
Braeckman, Ulrike;
Guilini, Katja;
Ahmerkamp, Soeren;
James, Rachael H.;
de Beer, Dirk

Publication type:

Article

Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean.

Published in:

Limnology & Oceanography, 2017, v. 62, n. 5, p. 1935, doi. 10.1002/lno.10544

By:

Ahmerkamp, Soeren;
Winter, Christian;
Krämer, Knut;
Beer, Dirk de;
Janssen, Felix;
Friedrich, Jana;
Kuypers, Marcel M. M.;
Holtappels, Moritz

Publication type:

Article

The influence of pore-water advection, benthic photosynthesis, and respiration on calcium carbonate dynamics in reef sands.

Published in:

Limnology & Oceanography, 2012, v. 57, n. 3, p. 11, doi. 10.4319/lo.2012.57.3.0809

By:

Rao, Alexandra M. F.;
Polerecky, Lubos;
Ionescu, Danny;
Meysman, Filip J. R.;
de Beer, Dirk

Publication type:

Article

Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea.

Published in:

Limnology & Oceanography, 2012, v. 57, n. 1, p. 22, doi. 10.4319/lo.2012.57.1.0185

By:

Hang Gao;
Matyka, Maciej;
Bo Liu;
Khalili, Arzhang;
Kostka, Joel E.;
Collins, Gavin;
Jansen, Stefan;
Holtappels, Moritz;
Jensen, Marlene M.;
Badewien, Thomas H.;
Beck, Melanie;
Grunwald, Maik;
de Beer, Dirk;
Lavik, Gaute;
Kuypers, Marcel M. M.

Publication type:

Article

Geochemical processes and chemosynthetic primary production in different thiotrophic mats of the Håkon Mosby Mud Volcano (Barents Sea).

Published in:

Limnology & Oceanography, 2010, v. 55, n. 2, p. 39, doi. 10.4319/lo.2010.55.2.0931

By:

Lichtschlag, Anna;
Felden, Janine;
Brüchert, Volker;
Boetius, Antje;
De Beer, Dirk

Publication type:

Article

Resilience of pore-water chemistry and calcification in photosynthetic zones of calcifying sediments.

Published in:

Limnology & Oceanography, 2010, v. 55, n. 1, p. 31, doi. 10.4319/lo.2010.55.1.0377

By:

Schoon, Raphaela;
Bissett, Andrew;
De Beer, Dirk

Publication type:

Article

Spatial and temporal patterns of mineralization rates and oxygen distribution in a permeable intertidal sand flat (Sylt, Germany).

Published in:

Limnology & Oceanography, 2006, v. 51, n. 6, p. 6, doi. 10.4319/lo.2006.51.6.2549

By:

Ursula, Werner;
Billerbeck, Markus;
Polerecky, Lubos;
Franke, Ulrich;
Huettel, Markus;
Van Beusekom, Justus E. E.;
De Beer, Dirk

Publication type:

Article

Probing the microenvironment of freshwater sediment macrofauna: Implications of deposit-feeding and bioirrigation for nitrogen cycling.

Published in:

Limnology & Oceanography, 2006, v. 51, n. 6, p. 5, doi. 10.4319/lo.2006.51.6.2538

By:

Stief, Peter;
De Beer, Dirk

Publication type:

Article

In situ fluxes and zonation of microbial activity in surface sediments of the Håkon Mosby Mud Volcano.

Published in:

Limnology & Oceanography, 2006, v. 51, n. 3, p. 10, doi. 10.4319/lo.2006.51.3.1315

By:

De Beer, Dirk;
Sauter, Eberhard;
Niemann, Helge;
Kaul, Norbert;
Foucher, Jean-Paul;
Witte, Ursula;
Schlüter, Michael;
Boetius, Antje

Publication type:

Article

Photosynthesis-controlled calcification in a hypersaline microbial mat.

Published in:

Limnology & Oceanography, 2005, v. 50, n. 6, p. 1836, doi. 10.4319/lo.2005.50.6.1836

By:

Ludwig, Rebecca;
Al-Horani, Fuad A.;
De Beer, Dirk;
Jonkers, Henk M.

Publication type:

Article