Works matching AU de Beer, Dirk

Results: 116

Niche separation in bacterial communities and activities in porewater, loosely attached, and firmly attached fractions in permeable surface sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae159

By:

Moncada, Chyrene;
Arnosti, Carol;
Brüwer, Jan D;
de Beer, Dirk;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

OXYGEN MICROSENSOR STUDIES ON ZOOXANTHELLATE CLIONAID SPONGES FROM THE COSTA BRAVA, MEDITERRANEAN SEA.

Published in:

Journal of Phycology, 2005, v. 41, n. 4, p. 774, doi. 10.1111/j.0022-3646.2005.04226.x

By:

Schönberg, Christine Hanna Lydia;
de Beer, Dirk;
Lawton, Angela

Publication type:

Article

Planktonic Aggregates as Hotspots for Heterotrophic Diazotrophy: The Plot Thickens.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.875050

By:

Riemann, Lasse;
Rahav, Eyal;
Passow, Uta;
Grossart, Hans-Peter;
de Beer, Dirk;
Klawonn, Isabell;
Eichner, Meri;
Benavides, Mar;
Bar-Zeev, Edo

Publication type:

Article

Co‐acquisition of mineral‐bound iron and phosphorus by natural Trichodesmium colonies.

Published in:

Limnology & Oceanography, 2023, v. 68, n. 5, p. 1064, doi. 10.1002/lno.12329

By:

Shaked, Yeala;
de Beer, Dirk;
Wang, Siyuan;
Zhang, Futing;
Visser, Anna‐Neva;
Eichner, Meri;
Basu, Subhajit

Publication type:

Article

Impact of shallow‐water hydrothermal seepage on benthic biogeochemical cycling, nutrient availability, and meiobenthic communities in a tropical coral reef.

Published in:

Limnology & Oceanography, 2022, v. 67, n. 3, p. 567, doi. 10.1002/lno.12017

By:

Lichtschlag, Anna;
Braeckman, Ulrike;
Guilini, Katja;
Ahmerkamp, Soeren;
James, Rachael H.;
de Beer, Dirk

Publication type:

Article

Regulation of benthic oxygen fluxes in permeable sediments of the coastal ocean.

Published in:

Limnology & Oceanography, 2017, v. 62, n. 5, p. 1935, doi. 10.1002/lno.10544

By:

Ahmerkamp, Soeren;
Winter, Christian;
Krämer, Knut;
Beer, Dirk de;
Janssen, Felix;
Friedrich, Jana;
Kuypers, Marcel M. M.;
Holtappels, Moritz

Publication type:

Article

The influence of pore-water advection, benthic photosynthesis, and respiration on calcium carbonate dynamics in reef sands.

Published in:

Limnology & Oceanography, 2012, v. 57, n. 3, p. 11, doi. 10.4319/lo.2012.57.3.0809

By:

Rao, Alexandra M. F.;
Polerecky, Lubos;
Ionescu, Danny;
Meysman, Filip J. R.;
de Beer, Dirk

Publication type:

Article

Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea.

Published in:

Limnology & Oceanography, 2012, v. 57, n. 1, p. 22, doi. 10.4319/lo.2012.57.1.0185

By:

Hang Gao;
Matyka, Maciej;
Bo Liu;
Khalili, Arzhang;
Kostka, Joel E.;
Collins, Gavin;
Jansen, Stefan;
Holtappels, Moritz;
Jensen, Marlene M.;
Badewien, Thomas H.;
Beck, Melanie;
Grunwald, Maik;
de Beer, Dirk;
Lavik, Gaute;
Kuypers, Marcel M. M.

Publication type:

Article

Geochemical processes and chemosynthetic primary production in different thiotrophic mats of the Håkon Mosby Mud Volcano (Barents Sea).

Published in:

Limnology & Oceanography, 2010, v. 55, n. 2, p. 39, doi. 10.4319/lo.2010.55.2.0931

By:

Lichtschlag, Anna;
Felden, Janine;
Brüchert, Volker;
Boetius, Antje;
De Beer, Dirk

Publication type:

Article

Resilience of pore-water chemistry and calcification in photosynthetic zones of calcifying sediments.

Published in:

Limnology & Oceanography, 2010, v. 55, n. 1, p. 31, doi. 10.4319/lo.2010.55.1.0377

By:

Schoon, Raphaela;
Bissett, Andrew;
De Beer, Dirk

Publication type:

Article

Spatial and temporal patterns of mineralization rates and oxygen distribution in a permeable intertidal sand flat (Sylt, Germany).

Published in:

Limnology & Oceanography, 2006, v. 51, n. 6, p. 6, doi. 10.4319/lo.2006.51.6.2549

By:

Ursula, Werner;
Billerbeck, Markus;
Polerecky, Lubos;
Franke, Ulrich;
Huettel, Markus;
Van Beusekom, Justus E. E.;
De Beer, Dirk

Publication type:

Article

Probing the microenvironment of freshwater sediment macrofauna: Implications of deposit-feeding and bioirrigation for nitrogen cycling.

Published in:

Limnology & Oceanography, 2006, v. 51, n. 6, p. 5, doi. 10.4319/lo.2006.51.6.2538

By:

Stief, Peter;
De Beer, Dirk

Publication type:

Article

In situ fluxes and zonation of microbial activity in surface sediments of the Håkon Mosby Mud Volcano.

Published in:

Limnology & Oceanography, 2006, v. 51, n. 3, p. 10, doi. 10.4319/lo.2006.51.3.1315

By:

De Beer, Dirk;
Sauter, Eberhard;
Niemann, Helge;
Kaul, Norbert;
Foucher, Jean-Paul;
Witte, Ursula;
Schlüter, Michael;
Boetius, Antje

Publication type:

Article

Photosynthesis-controlled calcification in a hypersaline microbial mat.

Published in:

Limnology & Oceanography, 2005, v. 50, n. 6, p. 1836, doi. 10.4319/lo.2005.50.6.1836

By:

Ludwig, Rebecca;
Al-Horani, Fuad A.;
De Beer, Dirk;
Jonkers, Henk M.

Publication type:

Article

Transport and mineralization rates in North Sea sandy intertidal sediments, Sylt-Rømø Basin, Wadden Sea.

Published in:

Limnology & Oceanography, 2005, v. 50, n. 1, p. 113, doi. 10.4319/lo.2005.50.1.0113

By:

De Beer, Dirk;
Wenzhöfer, Frank;
Ferdelman, Timothy G.;
Boehme, Susan E.;
Huettel, Markus;
Van Beusekom, Justus E. E.;
Böttcher, Michael E.;
Musat, Niculina;
Dubilier, Nicole

Publication type:

Article

Fine-scale measurement of diffusivity in a microbial mat with nuclear magnetic resonance imaging.

Published in:

Limnology & Oceanography, 2001, v. 46, n. 2, p. 248, doi. 10.4319/lo.2001.46.2.0248

By:

Wieland, Andrea;
de Beer, Dirk;
Damgaard, Lars R.;
Kühl, Michael;
van Dusschoten, Dagmar;
Van As, Henk

Publication type:

Article

A fast-responding CO2 microelectrode for profiling sediments, microbial mats, and biofilms.

Published in:

Limnology & Oceanography, 1997, v. 42, n. 7, p. 1590, doi. 10.4319/lo.1997.42.7.1590

By:

de Beer, Dirk;
Glud, Anni;
Epping, Eric;
Kûhl, Michael

Publication type:

Article

Microsensor for radioactivity.

Published in:

Journal of Labelled Compounds & Radiopharmaceuticals, 2007, v. 50, n. 5/6, p. 492, doi. 10.1002/jlcr.1215

By:

Filthuth, Heinz;
Eickert, Gabriele;
Färber, Paul;
Jonkers, Henk;
Polerecky, Lubos;
de Beer, Dirk

Publication type:

Article

Colonies of marine cyanobacteria Trichodesmium interact with associated bacteria to acquire iron from dust.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0534-z

By:

Basu, Subhajit;
Gledhill, Martha;
de Beer, Dirk;
Prabhu Matondkar, S. G.;
Shaked, Yeala

Publication type:

Article

Nitrate respiration occurs throughout the depth of mucoid and non-mucoid Pseudomonas aeruginosa submerged agar colony biofilms including the oxic zone.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11957-4

By:

Schwermer, Carsten Ulrich;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Article

Author Correction: Calcification in free‑living coralline algae is strongly influenced by morphology: Implications for susceptibility to ocean acidification.

Published in:

2021

By:

Schubert, Nadine;
Hofmann, Laurie C.;
Almeida Saá, Antonella C.;
Moreira, Anderson Camargo;
Arenhart, Rafael Güntzel;
Fernandes, Celso Peres;
de Beer, Dirk;
Horta, Paulo A.;
Silva, João

Publication type:

Correction Notice

Effects of Bioadvection by Arenicola marina on Microphytobenthos in Permeable Sediments.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0134236

By:

Chennu, Arjun;
Volkenborn, Nils;
de Beer, Dirk;
Wethey, David S.;
Woodin, Sarah A.;
Polerecky, Lubos

Publication type:

Article

Organic Matter Degradation Drives Benthic Cyanobacterial Mat Abundance on Caribbean Coral Reefs.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0125445

By:

Brocke, Hannah J.;
Polerecky, Lubos;
de Beer, Dirk;
Weber, Miriam;
Claudet, Joachim;
Nugues, Maggy M.

Publication type:

Article

Rapid Recovery of Cyanobacterial Pigments in Desiccated Biological Soil Crusts following Addition of Water.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112372

By:

Abed, Raeid M. M.;
Polerecky, Lubos;
Al-Habsi, Amal;
Oetjen, Janina;
Strous, Marc;
de Beer, Dirk

Publication type:

Article

Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092405

By:

Al-Thani, Roda;
Al-Najjar, Mohammad A. A.;
Al-Raei, Abdul Munem;
Ferdelman, Tim;
Thang, Nguyen M.;
Shaikh, Ismail Al;
Al-Ansi, Mehsin;
de Beer, Dirk

Publication type:

Article

Response of the Ubiquitous Pelagic Diatom Thalassiosira weissflogii to Darkness and Anoxia.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082605

By:

Kamp, Anja;
Stief, Peter;
Knappe, Jan;
de Beer, Dirk

Publication type:

Article

Role of Diatoms in the Spatial-Temporal Distribution of Intracellular Nitrate in Intertidal Sediment.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073257

By:

Stief, Peter;
Kamp, Anja;
de Beer, Dirk

Publication type:

Article

In Situ Coral Reef Oxygen Metabolism: An Eddy Correlation Study.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058581

By:

Long, Matthew H.;
Berg, Peter;
de Beer, Dirk;
Zieman, Joseph C.

Publication type:

Article

The O2, pH and Ca2+ Microenvironment of Benthic Foraminifera in a High CO2 World.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050010

By:

Glas, Martin S.;
Fabricius, Katharina E.;
de Beer, Dirk;
Uthicke, Sven

Publication type:

Article

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038319

By:

Ionescu, Danny;
Siebert, Christian;
Polerecky, Lubos;
Munwes, Yaniv Y.;
Lott, Christian;
Häusler, Stefan;
Bižić-Ionescu, Mina;
Quast, Christian;
Peplie, Jörg;
Glöckner, Frank Oliver;
Ramette, Alban;
Rödiger, Tino;
Dittmar, Thorsten;
Oren, Aharon;
Geyer, Stefan;
Stärk, Hans-Joachim;
Sauter, Martin;
Licha, Tobias;
Laronne, Jonathan B.;
de Beer, Dirk

Publication type:

Article

In Situ Oxygen Dynamics in Coral-Algal Interactions.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031192

By:

Wangpraseurt, Daniel;
Weber, Miriam;
Røy, Hans;
Polerecky, Lubos;
de Beer, Dirk;
Suharsono;
Nugues, Maggy M.

Publication type:

Article

Dissolution of Calcite in the Twilight Zone: Bacterial Control of Dissolution of Sinking Planktonic Carbonates Is Unlikely.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0026404

By:

Bissett, Andrew;
Neu, Thomas R.;
de Beer, Dirk

Publication type:

Article

Tonsillolith: Not Just a Stone But a Living Biofilm

Published in:

2008

By:

Krespi, Yosef P.;
Arora, Anil;
Longwell, Mark;
Nistico, Laura;
Hall-Stoodley, Luanne;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Abstract

Correction to: Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

2020

By:

Khosravi, Yalda;
Kandukuri, Rala D. P.;
Palmer, Sara R.;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Correction Notice

Use of an oxygen planar optode to assess the effect of high velocity microsprays on oxygen penetration in a human dental biofilms in-vitro.

Published in:

BMC Oral Health, 2020, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12903-020-01217-0

By:

Khosravi, Yalda;
Kandukuri, Raja Durga Prasad;
Palmer, Sara;
Gloag, Erin S.;
Borisov, Sergey M.;
Starke, E. Michelle;
Ward, Marilyn T.;
Kumar, Purnima;
de Beer, Dirk;
Chennu, Arjun;
Stoodley, Paul

Publication type:

Article

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.

Published in:

BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2180-14-35

By:

Stief, Peter;
Fuchs-Ocklenburg, Silvia;
Kamp, Anja;
Manohar, Cathrine-Sumathi;
Houbraken, Jos;
Boekhout, Teun;
de Beer, Dirk;
Stoeck, Thorsten

Publication type:

Article

The role of nitric-oxide-synthase-derived nitric oxide in multicellular traits of Bacillus subtilis 3610: biofilm formation, swarming, and dispersal.

Published in:

BMC Microbiology, 2011, v. 11, n. 1, p. 111, doi. 10.1186/1471-2180-11-111

By:

Schreiber, Frank;
Beutler, Martin;
Enning, Dennis;
Lamprecht-Grandio, María;
Zafra, Olga;
González-Pastor, José Eduardo;
Beer, Dirk de

Publication type:

Article

Denitrification in human dental plaque.

Published in:

BMC Biology, 2010, v. 8, p. 24, doi. 10.1186/1741-7007-8-24

By:

Schreiber, Frank;
Stief, Peter;
Gieseke, Armin;
Heisterkamp, Ines M.;
Verstraete, Willy;
de Beer, Dirk;
Stoodley, Paul

Publication type:

Article

Effect of nitrite and nitrate on in situ sulfide production in an activated sludge immobilized agar gel film as determined by use of microelectrodes.

Published in:

Biotechnology & Bioengineering, 2003, v. 81, n. 5, p. 570, doi. 10.1002/bit.10495

By:

Okabe, Satoshi;
Santegoeds, Cecilia M.;
De Beer, Dirk

Publication type:

Article

Successional development of sulfate-reducing bacterial populations and their activities in an activated sludge immobilized agar gel film.

Published in:

Biotechnology & Bioengineering, 2002, v. 78, n. 2, p. 119, doi. 10.1002/bit.10240

By:

Okabe, Satoshi;
Santegoeds, Cecilia M.;
Watanabe, Yoshimasa;
Beer, Dirk de

Publication type:

Article

Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy.

Published in:

Biotechnology & Bioengineering, 1997, v. 53, n. 2, p. 151, doi. 10.1002/(SICI)1097-0290(19970120)53:2<151::AID-BIT4>3.0.CO;2-N

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Liquid flow in heterogeneous biofilms.

Published in:

Biotechnology & Bioengineering, 1994, v. 44, n. 5, p. 636, doi. 10.1002/bit.260440510

By:

de Beer, Dirk;
Stoodley, Paul;
Lewandowski, Zbigniew

Publication type:

Article

Effects of biofilm structures on oxygen distribution and mass transport.

Published in:

Biotechnology & Bioengineering, 1994, v. 43, n. 11, p. 1131, doi. 10.1002/bit.260431118

By:

de Beer, Dirk;
Stoodley, Paul;
Roe, Frank;
Lewandowski, Zbigniew

Publication type:

Article

Arctic Coralline Algae Elevate Surface pH and Carbonate in the Dark.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01416

By:

Hofmann, Laurie C.;
Schoenrock, Kathryn;
de Beer, Dirk

Publication type:

Article

Advection Drives Nitrate Past the Microphytobenthos in Intertidal Sands, Fueling Deeper Denitrification.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.556268

By:

Schutte, Charles A.;
Huanca-Valenzuela, Paulina;
Lavik, Gaute;
Marchant, Hannah K.;
de Beer, Dirk

Publication type:

Article

Oxygenic and anoxygenic photosynthesis in a microbial mat from an anoxic and sulfidic spring.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1251, doi. 10.1111/1462-2920.13654

By:

de Beer, Dirk;
Weber, Miriam;
Chennu, Arjun;
Hamilton, Trinity;
Lott, Christian;
Macalady, Jennifer;
M. Klatt, Judith

Publication type:

Article

Shell biofilm-associated nitrous oxide production in marine molluscs: processes, precursors and relative importance.

Published in:

Environmental Microbiology, 2013, v. 15, n. 7, p. 1943, doi. 10.1111/j.1462-2920.2012.02823.x

By:

Heisterkamp, Ines M.;
Schramm, Andreas;
Larsen, Lone H.;
Svenningsen, Nanna B.;
Lavik, Gaute;
de Beer, Dirk;
Stief, Peter

Publication type:

Article

Vacuolar respiration of nitrate coupled to energy conservation in filamentous Beggiatoaceae.

Published in:

Environmental Microbiology, 2012, v. 14, n. 11, p. 2911, doi. 10.1111/j.1462-2920.2012.02851.x

By:

Beutler, Martin;
Milucka, Jana;
Hinck, Susanne;
Schreiber, Frank;
Brock, Jörg;
Mußmann, Marc;
Schulz-Vogt, Heide N.;
de Beer, Dirk

Publication type:

Article

Light utilization efficiency in photosynthetic microbial mats.

Published in:

Environmental Microbiology, 2012, v. 14, n. 4, p. 982, doi. 10.1111/j.1462-2920.2011.02676.x

By:

Al-Najjar, Mohammad A. A.;
de Beer, Dirk;
Kühl, Michael;
Polerecky, Lubos

Publication type:

Article

Vacuolated Beggiatoa-like filaments from different hypersaline environments form a novel genus.

Published in:

Environmental Microbiology, 2011, v. 13, n. 12, p. 3194, doi. 10.1111/j.1462-2920.2011.02513.x

By:

Hinck, Susanne;
Mußmann, Marc;
Salman, Verena;
Neu, Thomas R.;
Lenk, Sabine;
de Beer, Dirk;
Jonkers, Henk M.

Publication type:

Article