Works by Zui Fujimoto

Results: 40

Truncation of N- and C-terminal regions of Streptococcus mutans dextranase enhances catalytic activity.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 91, n. 2, p. 329, doi. 10.1007/s00253-011-3201-y

By:

Young-Min Kim;
Shimizu, Ryoko;
Nakai, Hiroyuki;
Mori, Haruhide;
Okuyama, Masayuki;
Min-Sun Kang;
Fujimoto, Zui;
Funane, Kazumi;
Kim, Doman;
Kimura, Atsuo

Publication type:

Article

Characterization of a modular enzyme of exo-1,5-α- l-arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 80, n. 3, p. 399, doi. 10.1007/s00253-008-1551-x

By:

Ichinose, Hitomi;
Yoshida, Makoto;
Fujimoto, Zui;
Kaneko, Satoshi

Publication type:

Article

Chitin‐signaling‐dependent responses to insect oral secretions in rice cells propose the involvement of chitooligosaccharides in plant defense against herbivores.

Published in:

Plant Journal, 2025, v. 121, n. 1, p. 1, doi. 10.1111/tpj.17157

By:

Kanda, Yasukazu;
Shinya, Tomonori;
Wari, David;
Hojo, Yuko;
Fujiwara, Yuka;
Tsuchiya, Wataru;
Fujimoto, Zui;
Thomma, Bart P. H. J.;
Nishizawa, Yoko;
Kamakura, Takashi;
Galis, Ivan;
Mori, Masaki

Publication type:

Article

NMR assignments of juvenile hormone binding protein in complex with JH III.

Published in:

Biomolecular NMR Assignments, 2009, v. 3, n. 1, p. 73, doi. 10.1007/s12104-009-9144-x

By:

Suzuki, Rintaro;
Tase, Akira;
Fujimoto, Zui;
Shiotsuki, Takahiro;
Yamazaki, Toshimasa

Publication type:

Article

Crystal structure of the ferredoxin reductase component of carbazole 1,9a‐dioxygenase from Janthinobacterium sp. J3.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 7, p. 921, doi. 10.1107/S2059798321005040

By:

Ashikawa, Yuji;
Fujimoto, Zui;
Inoue, Kengo;
Yamane, Hisakazu;
Nojiri, Hideaki

Publication type:

Article

Crystal Structure of Silkworm <i>Bombyx mori</i> JHBP in Complex With 2-Methyl-2,4-Pentanediol: Plasticity of JH-Binding Pocket and Ligand-Induced Conformational Change of the Second Cavity in JHBP.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056261

By:

Fujimoto, Zui;
Suzuki, Rintaro;
Shiotsuki, Takahiro;
Tsuchiya, Wataru;
Tase, Akira;
Momma, Mitsuru;
Yamazaki, Toshimasa

Publication type:

Article

Substrate Specificities of GH8, GH39, and GH52 β-xylosidases from Bacillus halodurans C-125 Toward Substituted Xylooligosaccharides.

Published in:

Applied Biochemistry & Biotechnology, 2021, v. 193, n. 4, p. 1042, doi. 10.1007/s12010-020-03451-2

By:

Teramoto, Koji;
Tsutsui, Sosyu;
Sato, Tomoko;
Fujimoto, Zui;
Kaneko, Satoshi

Publication type:

Article

Autophosphorylation of Specific Threonine and Tyrosine Residues in Arabidopsis CERK1 is Essential for the Activation of Chitin-Induced Immune Signaling.

Published in:

Plant & Cell Physiology, 2016, v. 57, n. 11, p. 2312, doi. 10.1093/pcp/pcw150

By:

Maruya Suzuki;
Masatoshi Shibuya;
Hikaru Shimada;
Noriko Motoyama;
Masato Nakashima;
Shohei Takahashi;
Kenkichi Suto;
Issei Yoshida;
Saki Matsui;
Natsumi Tsujimoto;
Mihoko Ohnishi;
Yuko Ishibashi;
Zui Fujimoto;
Yoshitake Desaki;
Hanae Kaku;
Keiji Kito;
Naoto Shibuya

Publication type:

Article

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.605705

By:

Takeuchi, Kasumi;
Tsuchiya, Wataru;
Fujimoto, Zui;
Yamada, Kosumi;
Someya, Nobutaka;
Yamazaki, Toshimasa

Publication type:

Article

Crystallization and Preliminary X-Ray Crystallographic Study of Streptomyces olivaceoviridis E-86 β-Xylanase.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 5, p. 826, doi. 10.1093/oxfordjournals.jbchem.a021659

By:

Fujimoto, Zui;
Mizuno, Hiroshi;
Kuno, Atsushi;
Yoshida, Shigeki;
Kobayashi, Hideyuki;
Kusakabe, Isao

Publication type:

Article

A unique substrate specificity of PonAAS2, an aromatic aldehyde synthase, involved in phytohormone auxin biosynthesis in a gall-inducing sawfly Euura sp. "Pontania".

Published in:

Bioscience, Biotechnology & Biochemistry, 2025, v. 89, n. 4, p. 533, doi. 10.1093/bbb/zbaf005

By:

Suzuki, Yoshihito;
Ichikawa, Hikaru;
Kunioka, Yuri;
Miyata, Umi;
Nakamura, Shugo;
Fujimoto, Zui

Publication type:

Article

Tetramer formation of Bacillus subtilis YabJ protein that belongs to YjgF/YER057c/UK114 family.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 2, p. 297, doi. 10.1093/bbb/zbaa037

By:

Fujimoto, Zui;
Hong, Le Thi Thu;
Kishine, Naomi;
Suzuki, Nobuhiro;
Kimura, Keitarou

Publication type:

Article

Structure and Function of Carbohydrate-Binding Module Families 13 and 42 of Glycoside Hydrolases, Comprising a β-Trefoil Fold.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 7, p. 1363, doi. 10.1271/bbb.130183

By:

Zui FUJIMOTO

Publication type:

Article

Characterization of an α-L-Rhamnosidase from Streptomyces avermitilis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 1, p. 213, doi. 10.1271/bbb.120735

By:

ICHINOSE, Hitomi;
FUJIMOTO, Zui;
KANEKO, Satoshi

Publication type:

Article

Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2012, v. 76, n. 8, p. 1591, doi. 10.1271/bbb.120305

By:

MOMMA, Mitsuru;
FUJIMOTO, Zui

Publication type:

Article

The Tetramer Structure of the Glycoside Hydrolase Family 27 α-Galactosidase I from Umbelopsis vinacea.

Published in:

Bioscience, Biotechnology & Biochemistry, 2009, v. 73, n. 10, p. 2360, doi. 10.1271/bbb.90604

By:

Fujimoto, Zui;
Kaneko, Satoshi;
Kim, Wook-Dong;
Park, Gwi-Gun;
Momma, Mitsuru;
Kobayashi, Hideyuki

Publication type:

Article

Deciphering transcriptomic signatures explaining the phenotypic plasticity of nonheading lettuce genotypes under artificial light conditions.

Published in:

Plant, Cell & Environment, 2023, v. 46, n. 12, p. 3971, doi. 10.1111/pce.14677

By:

Yamashita, Hiroto;
Wada, Kaede C.;
Inagaki, Noritoshi;
Fujimoto, Zui;
Yonemaru, Jun‐ichi;
Itoh, Hironori

Publication type:

Article

Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system.

Published in:

Proteins, 2005, v. 58, n. 4, p. 779, doi. 10.1002/prot.20374

By:

Nam, Jeong-Won;
Noguchi, Haruko;
Fujimoto, Zui;
Mizuno, Hiroshi;
Ashikawa, Yuji;
Abo, Mitsuru;
Fushinobu, Shinya;
Kobashi, Nobuyuki;
Wakagi, Takayoshi;
Iwata, Kenichi;
Yoshida, Takako;
Habe, Hiroshi;
Yamane, Hisakazu;
Omori, Toshio;
Nojiri, Hideaki

Publication type:

Article

Module shuffling of a family F/10 xylanase: replacement of modules M4 and M5 of the FXYN of Streptomyces olivaceoviridis E-86 with those of the Cex of Cellulomonas fimi.

Published in:

Protein Engineering, 2000, v. 13, n. 12, p. 873, doi. 10.1093/protein/13.12.873

By:

Kaneko, Satoshi;
Iwamatsu, Shinnosuke;
Kuno, Atsushi;
Fujimoto, Zui;
Sato, Yoko;
Yura, Kei;
Go, Mitiko;
Mizuno, Hiroshi;
Taira, Kazunari;
Hasegawa, Tsunemi;
Kusakabe, Isao;
Hayashi, Kiyoshi

Publication type:

Article

Crystal structure of metagenomic β-xylosidase/α-L-arabinofuranosidase activated by calcium.

Published in:

Journal of Biochemistry, 2017, v. 162, n. 3, p. 173, doi. 10.1093/jb/mvx012

By:

Tomohiko Matsuzawa;
Satoshi Kaneko;
Naomi Kishine;
Zui Fujimoto;
Katsuro Yaoi

Publication type:

Article

Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 331, doi. 10.1093/jb/mvv104

By:

Nobuhiro Suzuki;
Naomi Kishine;
Zui Fujimoto;
Mutsumi Sakurai;
Mitsuru Momma;
Jin-A. Ko;
Seung-HeeNam;
Atsuo Kimura;
Young-Min Kim

Publication type:

Article

Studies on crenarchaeal tyrosylation accuracy with mutational analyses of tyrosyl-tRNA synthetase and tyrosine tRNA from Aeropyrum pernix.

Published in:

Journal of Biochemistry, 2012, v. 152, n. 6, p. 539, doi. 10.1093/jb/mvs114

By:

Iwaki, Jun;
Endo, Kanako;
Ichikawa, Takayuki;
Suzuki, Ryuichiro;
Fujimoto, Zui;
Momma, Mitsuru;
Kuno, Atsushi;
Nishimura, Susumu;
Hasegawa, Tsunemi

Publication type:

Article

Crystallographic Snapshots of an Entire Reaction Cycle for a Retaining Xylanase from Streptomyces olivaceoviridis E-86.

Published in:

Journal of Biochemistry, 2009, v. 146, n. 1, p. 61, doi. 10.1093/jb/mvp047

By:

Suzuki, Ryuichiro;
Fujimoto, Zui;
Ito, Shigeyasu;
Kawahara, Shun-Ichi;
Kaneko, Satoshi;
Taira, Kazunari;
Hasegawa, Tsunemi;
Kuno, Atsushi

Publication type:

Article

Tailoring a Novel Sialic Acid-Binding Lectin from a Ricin-B Chain-like Galactose-Binding Protein by Natural Evolution-Mimicry.

Published in:

Journal of Biochemistry, 2007, v. 141, n. 3, p. 389, doi. 10.1093/jb/mvm043

By:

Yabe, Rikio;
Suzuki, Ryuichiro;
Kuno, Atsushi;
Fujimoto, Zui;
Jigami, Yoshifumi;
Hirabayashi, Jun

Publication type:

Article

Crystal Structure of Bacillus stearothermophilus a-Amylase: Possible Factors Determining the Thermostability1.

Published in:

Journal of Biochemistry, 2001, v. 129, n. 3, p. 461, doi. 10.1093/oxfordjournals.jbchem.a002878

By:

Suvd, Duvjir;
Fujimoto, Zui;
Takase, Kenji;
Matsumura, Masatoshi;
Mizuno, Hiroshi

Publication type:

Article

Cell-surface protein YwfG of Lactococcus lactis binds to α-1,2-linked mannose.

Published in:

PLoS ONE, 2023, v. 18, n. 1, p. 1, doi. 10.1371/journal.pone.0273955

By:

Tsuchiya, Wataru;
Fujimoto, Zui;
Inagaki, Noritoshi;
Nakagawa, Hiroyuki;
Tanaka, Miwa;
Kimoto-Nira, Hiromi;
Yamazaki, Toshimasa;
Suzuki, Chise

Publication type:

Article

Isomaltooligosaccharide-binding structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase.

Published in:

Bioscience Reports, 2017, v. 37, n. 2, p. 1, doi. 10.1042/BSR20170253

By:

Zui Fujimoto;
Naomi Kishine;
Nobuhiro Suzuki;
Ryuichiro Suzuki;
Daiki Mizushima;
Mitsuru Momma;
Keitarou Kimura;
Kazumi Funane

Publication type:

Article

Structural similarities and differences in H- NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440.

Published in:

FEBS Letters, 2016, v. 590, n. 20, p. 3583, doi. 10.1002/1873-3468.12425

By:

Suzuki-Minakuchi, Chiho;
Kawazuma, Kohei;
Matsuzawa, Jun;
Vasileva, Delyana;
Fujimoto, Zui;
Terada, Tohru;
Okada, Kazunori;
Nojiri, Hideaki

Publication type:

Article

Bacteroides thetaiotaomicron VPI-5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions.

Published in:

FEBS Journal, 2012, v. 279, n. 17, p. 3185, doi. 10.1111/j.1742-4658.2012.08698.x

By:

Kim, Young-Min;
Yamamoto, Eiji;
Kang, Min-Sun;
Nakai, Hiroyuki;
Saburi, Wataru;
Okuyama, Masayuki;
Mori, Haruhide;
Funane, Kazumi;
Momma, Mitsuru;
Fujimoto, Zui;
Kobayashi, Mikihiko;
Kim, Doman;
Kimura, Atsuo

Publication type:

Article

Structure-based substrate specificity analysis of GH11 xylanase from Streptomyces olivaceoviridis E-86.

Published in:

Applied Microbiology & Biotechnology, 2021, v. 105, n. 5, p. 1943, doi. 10.1007/s00253-021-11098-0

By:

Fujimoto, Zui;
Kishine, Naomi;
Teramoto, Koji;
Tsutsui, Sosyu;
Kaneko, Satoshi

Publication type:

Article

Paenibacillus sp. 598K 6-α-glucosyltransferase is essential for cycloisomaltooligosaccharide synthesis from α-(1 → 4)-glucan.

Published in:

Applied Microbiology & Biotechnology, 2017, v. 101, n. 10, p. 4115, doi. 10.1007/s00253-017-8174-z

By:

Ichinose, Hitomi;
Suzuki, Ryuichiro;
Miyazaki, Takatsugu;
Kimura, Keitarou;
Momma, Mitsuru;
Suzuki, Nobuhiro;
Fujimoto, Zui;
Kimura, Atsuo;
Funane, Kazumi

Publication type:

Article

Evidence for cycloisomaltooligosaccharide production from starch by Bacillus circulans T-3040.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 9, p. 3947, doi. 10.1007/s00253-014-5515-z

By:

Funane, Kazumi;
Ichinose, Hitomi;
Araki, Motomi;
Suzuki, Ryuichiro;
Kimura, Keitarou;
Fujimoto, Zui;
Kobayashi, Mikihiko;
Kimura, Atsuo

Publication type:

Article

Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of Rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase.

Published in:

BMC Structural Biology, 2012, v. 12, n. 1, p. 15, doi. 10.1186/1472-6807-12-15

By:

Yuji Ashikawa;
Zui Fujimoto;
Yusuke Usami;
Kengo Inoue;
Haruko Noguchi;
Hisakazu Yamane;
Hideaki Nojiri

Publication type:

Article

Carbohydrate-binding architecture of the multi-modular α-1,6-glucosyltransferase from Paenibacillus sp. 598K, which produces α-1,6-glucosyl-α-glucosaccharides from starch.

Published in:

Biochemical Journal, 2017, v. 474, n. 16, p. 2763, doi. 10.1042/BCJ20170152

By:

Zui Fujimoto;
Nobuhiro Suzuki;
Naomi Kishine;
Hitomi Ichinose;
Mitsuru Momma;
Atsuo Kimura;
Kazumi Funane

Publication type:

Article

Molecular engineering of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040: structural determinants for the reaction product size and reactivity.

Published in:

Biochemical Journal, 2015, v. 467, n. 2, p. 259, doi. 10.1042/BJ20140860

By:

Ryuichiro Suzuki;
Nobuhiro Suzuki;
Zui Fujimoto;
Mitsuru Momma;
Keitarou Kimura;
Shinichi Kitamura;
Atsuo Kimura;
Kazumi Funane

Publication type:

Article

Genetic effects of Red Lettuce Leaf genes on red coloration in leaf lettuce under artificial lighting conditions.

Published in:

Plant-Environment Interactions, 2022, v. 3, n. 4, p. 179, doi. 10.1002/pei3.10089

By:

Wada, Kaede C.;
Inagaki, Noritoshi;
Sakai, Hiroaki;
Yamashita, Hiroto;
Nakai, Yusuke;
Fujimoto, Zui;
Yonemaru, Jun‐ichi;
Itoh, Hironori

Publication type:

Article

Crystallization and preliminary X-ray diffraction analyses of the redox-controlled complex of terminal oxygenase and ferredoxin components in the Rieske nonhaem iron oxygenase carbazole 1,9a-dioxygenase.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 10, p. 1406, doi. 10.1107/S2053230X14018779

By:

Matsuzawa, Jun;
Aikawa, Hiroki;
Umeda, Takashi;
Ashikawa, Yuji;
Suzuki-Minakuchi, Chiho;
Kawano, Yoshiaki;
Fujimoto, Zui;
Okada, Kazunori;
Yamane, Hisakazu;
Nojiri, Hideaki

Publication type:

Article

Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)<sub>2</sub> observed by neutron diffraction measurements.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 9, p. 3017, doi. 10.1093/nar/gki616

By:

Arai, Shigeki;
Chatake, Toshiyuki;
Ohhara, Takashi;
Kurihara, Kazuo;
Tanaka, Ichiro;
Suzuki, Nobuhiro;
Fujimoto, Zui;
Mizuno, Hiroshi;
Niimura, Nobuo

Publication type:

Article

The Sorghum Gene for Leaf Color Changes upon Wounding (P) Encodes a Flavanone 4-Reductase in the 3-Deoxyanthocyanidin Biosynthesis Pathway.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 5, p. 1439, doi. 10.1534/g3.115.026104

By:

Hiroyuki Kawahigashi;
Shigemitsu Kasuga;
Yuji Sawada;
Jun-ichi Yonemaru;
Tsuyu Ando;
Hiroyuki Kanamori;
Jianzhong Wu;
Hiroshi Mizuno;
Mitsuru Momma;
Zui Fujimoto;
Masami Yokota Hirai;
Takashi Matsumoto

Publication type:

Article

Crystal structure of bacteriophage ϕNIT1 zinc peptidase PghP that hydrolyzes γ-glutamyl linkage of bacterial poly-γ-glutamate.

Published in:

Proteins, 2012, v. 80, n. 3, p. 722, doi. 10.1002/prot.23229

By:

Fujimoto, Zui;
Kimura, Keitarou

Publication type:

Article