Works matching AU Zucker, Jean-Daniel

Results: 39

Interpretable and accurate prediction models for metagenomics data.

Published in:

GigaScience, 2020, v. 9, n. 3, p. N.PAG, doi. 10.1093/gigascience/giaa010

By:

Prifti, Edi;
Chevaleyre, Yann;
Hanczar, Blaise;
Belda, Eugeni;
Danchin, Antoine;
Clément, Karine;
Zucker, Jean-Daniel

Publication type:

Article

Characterization of the Gut Microbiota in Individuals with Overweight or Obesity during a Real-World Weight Loss Dietary Program: A Focus on the Bacteroides 2 Enterotype.

Published in:

Biomedicines, 2022, v. 10, n. 1, p. 16, doi. 10.3390/biomedicines10010016

By:

Alili, Rohia;
Belda, Eugeni;
Fabre, Odile;
Pelloux, Véronique;
Giordano, Nils;
Legrand, Rémy;
Bel Lassen, Pierre;
Swartz, Timothy D.;
Zucker, Jean-Daniel;
Clément, Karine

Publication type:

Article

Long-term Relapse of Type 2 Diabetes After Roux-en-Y Gastric Bypass: Prediction and Clinical Relevance.

Published in:

2018

By:

Debédat, Jean;
de Turenne, Garance;
Sokolovska, Nataliya;
Zucker, Jean-Daniel;
Clément, Karine;
Aron-Wisnewsky, Judith;
Poitou, Christine;
Mingrone, Geltrude;
Coupaye, Muriel;
Ledoux, Séverine;
Panunzi, Simona;
Chakaroun, Rima;
Blüher, Matthias;
Stumvoll, Michael;
Genser, Laurent;
Bouillot, Jean-Luc;
Oppert, Jean-Michel

Publication type:

journal article

The Ecosystem in Practice: Interest and Problems of an Old Definition for Constructing Ecological Models.

Published in:

Ecosystems, 2011, v. 14, n. 7, p. 1039, doi. 10.1007/s10021-011-9466-2

By:

Gignoux, Jacques;
Davies, Ian;
Flint, Shayne;
Zucker, Jean-Daniel

Publication type:

Article

Exploring Semi-Quantitative Metagenomic Studies Using Oxford Nanopore Sequencing: A Computational and Experimental Protocol.

Published in:

Genes, 2021, v. 12, n. 10, p. 1496, doi. 10.3390/genes12101496

By:

Alili, Rohia;
Belda, Eugeni;
Le, Phuong;
Wirth, Thierry;
Zucker, Jean-Daniel;
Prifti, Edi;
Clément, Karine

Publication type:

Article

No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects.

Published in:

Microbial Biotechnology, 2018, v. 11, n. 4, p. 588, doi. 10.1111/1751-7915.13284

By:

Danchin, Antoine;
Ouzounis, Christos;
Tokuyasu, Taku;
Zucker, Jean‐daniel

Publication type:

Article

Enhancing plant morphological trait identification in herbarium collections through deep learning–based segmentation.

Published in:

Applications in Plant Sciences, 2025, v. 13, n. 2, p. 1, doi. 10.1002/aps3.70000

By:

Ariouat, Hanane;
Sklab, Youcef;
Prifti, Edi;
Zucker, Jean‐Daniel;
Chenin, Eric

Publication type:

Article

The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass.

Published in:

Gut Microbes, 2022, v. 14, n. 1, p. 1, doi. 10.1080/19490976.2022.2050635

By:

Debédat, Jean;
Le Roy, Tiphaine;
Voland, Lise;
Belda, Eugeni;
Alili, Rohia;
Adriouch, Solia;
Bel Lassen, Pierre;
Kasahara, Kazuyuki;
Hutchison, Evan;
Genser, Laurent;
Torres, Licia;
Gamblin, Camille;
Rouault, Christine;
Zucker, Jean-Daniel;
Kapel, Nathalie;
Poitou, Christine;
Marcelin, Geneviève;
Rey, Federico E.;
Aron-Wisnewsky, Judith;
Clément, Karine

Publication type:

Article

From correlation to causality: the case of Subdoligranulum.

Published in:

Gut Microbes, 2021, v. 13, n. 1, p. 1, doi. 10.1080/19490976.2020.1849998

By:

Van Hul, Matthias;
Le Roy, Tiphaine;
Prifti, Edi;
Dao, Maria Carlota;
Paquot, Adrien;
Zucker, Jean-Daniel;
Delzenne, Nathalie M.;
Muccioli, Giulio G.;
Clément, Karine;
Cani, Patrice D.

Publication type:

Article

Prediction of Long-Term Diabetes Remission After RYGB, Sleeve Gastrectomy, and Adjustable Gastric Banding Using DiaRem and Advanced-DiaRem Scores.

Published in:

Obesity Surgery, 2019, v. 29, n. 3, p. 796, doi. 10.1007/s11695-018-3583-3

By:

Dicker, Dror;
Rudich, Assaf;
Golan, Rachel;
Aron-Wisnewsky, Judith;
Sokolowska, Natalyia;
Clément, Karine;
Zucker, Jean-Daniel;
Comaneshter, Doron S.;
Yahalom, Rina;
Vinker, Shlomo

Publication type:

Article

In Vivo Epinephrine-Mediated Regulation of Gene Expression in Human Skeletal Muscle.

Published in:

Journal of Clinical Endocrinology & Metabolism, 2004, v. 89, n. 5, p. 2000, doi. 10.1210/jc.2003-031733

By:

VIGUERIE, NATHALIE;
CLEMENT, KARINE;
BARBE, PIERRE;
COURTINE, MELANIE;
BENIS, ARRIEL;
LARROUY, DOMINIQUE;
HANCZAR, BLAISE;
PELLOUX, VERONIQUE;
POITOU, CHRISTINE;
KHALFALLAH, YADH;
BARSH, GREGORY S.;
THALAMAS, CLAIRE;
ZUCKER, JEAN-DANIEL;
LANGIN, DOMINIQUE

Publication type:

Article

Interactional and functional centrality in transcriptional co-expression networks.

Published in:

Bioinformatics, 2010, v. 26, n. 24, p. 3083, doi. 10.1093/bioinformatics/btq591

By:

Prifti, Edi;
Zucker, Jean-Daniel;
Clément, Karine;
Henegar, Corneliu

Publication type:

Article

METAPLANTCODE: Harmonizing Plant Metabarcoding Pipelines in Europe.

Published in:

Biodiversity Information Science & Standards, 2024, p. 1, doi. 10.3897/biss.8.135729

By:

Gardette, Auguste;
Sklab, Youcef;
Belda, Eugeni;
Chenin, Eric;
Zucker, Jean-Daniel

Publication type:

Article

Towards a Deep Learning-Powered Herbarium Image Analysis Platform.

Published in:

Biodiversity Information Science & Standards, 2024, p. 1, doi. 10.3897/biss.8.135629

By:

Sklab, Youcef;
Ariouat, Hanane;
Boujydah, Youssef;
Qacami, Yassine;
Prifti, Edi;
Zucker, Jean-daniel;
Vignes Lebbe, Régine;
Chenin, Eric

Publication type:

Article

The FAT Score, a Fibrosis Score of Adipose Tissue: Predicting Weight-Loss Outcome After Gastric Bypass.

Published in:

2017

By:

Bel Lassen, Pierre;
Charlotte, Frederic;
Liu, Yuejun;
Bedossa, Pierre;
Le Naour, Gilles;
Tordjman, Joan;
Poitou, Christine;
Bouillot, Jean-Luc;
Genser, Laurent;
Zucker, Jean-Daniel;
Sokolovska, Nataliya;
Aron-Wisnewsky, Judith;
Clément, Karine

Publication type:

journal article

Association of Adipose Tissue and Liver Fibrosis With Tissue Stiffness in Morbid Obesity: Links With Diabetes and BMI Loss After Gastric Bypass.

Published in:

2014

By:

Abdennour, Meriem;
Reggio, Sophie;
Le Naour, Gilles;
Liu, Yuejun;
Poitou, Christine;
Aron-Wisnewsky, Judith;
Charlotte, Frederic;
Bouillot, Jean-Luc;
Torcivia, Adriana;
Sasso, Magali;
Miette, Veronique;
Zucker, Jean-Daniel;
Bedossa, Pierre;
Tordjman, Joan;
Clement, Karine

Publication type:

Journal Article

LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning.

Published in:

BMC Medical Informatics & Decision Making, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12911-022-02085-0

By:

Martenot, Vincent;
Masdeu, Valentin;
Cupe, Jean;
Gehin, Faustine;
Blanchon, Margot;
Dauriat, Julien;
Horst, Alexander;
Renaudin, Michael;
Girard, Philippe;
Zucker, Jean-Daniel

Publication type:

Article

Spectral consensus strategy for accurate reconstruction of large biological networks.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 85, doi. 10.1186/s12859-016-1308-y

By:

Affeldt, Séverine;
Sokolovska, Nataliya;
Prifti, Edi;
Zucker, Jean-Daniel

Publication type:

Article

The advanced-DiaRem score improves prediction of diabetes remission 1 year post-Roux-en-Y gastric bypass.

Published in:

Diabetologia, 2017, v. 60, n. 10, p. 1892, doi. 10.1007/s00125-017-4371-7

By:

Aron-Wisnewsky, Judith;
Sokolovska, Nataliya;
Liu, Yuejun;
Comaneshter, Doron;
Vinker, Shlomo;
Pecht, Tal;
Poitou, Christine;
Oppert, Jean-Michel;
Bouillot, Jean-Luc;
Genser, Laurent;
Dicker, Dror;
Zucker, Jean-Daniel;
Rudich, Assaf;
Clément, Karine

Publication type:

Article

The accuracy versus interpretability trade-off in fraud detection model.

Published in:

Data & Policy, 2021, v. 3, p. e12-1, doi. 10.1017/dap.2021.3

By:

Nesvijevskaia, Anna;
Ouillade, Sophie;
Guilmin, Pauline;
Zucker, Jean-Daniel

Publication type:

Article

Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission.

Published in:

Nutrients, 2020, v. 12, n. 2, p. 278, doi. 10.3390/nu12020278

By:

Al Assal, Karina;
Prifti, Edi;
Belda, Eugeni;
Sala, Priscila;
Clément, Karine;
Dao, Maria-Carlota;
Doré, Joel;
Levenez, Florence;
Taddei, Carla R.;
Fonseca, Danielle Cristina;
Rocha, Ilanna Marques;
Balmant, Bianca Depieri;
Thomas, Andrew Maltez;
Santo, Marco A.;
Dias-Neto, Emmanuel;
Setubal, João Carlos;
Zucker, Jean-Daniel;
Belarmino, Giliane;
Torrinhas, Raquel Susana;
Waitzberg, Dan L.

Publication type:

Article

CLUSTERING BIOLOGICAL ANNOTATIONS AND GENE EXPRESSION DATA TO IDENTIFY PUTATIVELY CO-REGULATED BIOLOGICAL PROCESSES.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 4, p. 833, doi. 10.1142/S0219720006002181

By:

HENEGAR, CORNELIU;
CANCELLO, RAFFAELLA;
ROME, SOPHIE;
VIDAL, HUBERT;
CLÉMENT, KARINE;
ZUCKER, JEAN-DANIEL

Publication type:

Article

Functional alterations and predictive capacity of gut microbiome in type 2 diabetes.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-49679-w

By:

Dash, Nihar Ranjan;
Al Bataineh, Mohammad T.;
Alili, Rohia;
Al Safar, Habiba;
Alkhayyal, Noura;
Prifti, Edi;
Zucker, Jean-Daniel;
Belda, Eugeni;
Clément, Karine

Publication type:

Article

A MODEL OF ABSTRACTION IN VISUAL PERCEPTION.

Published in:

Applied Artificial Intelligence, 2001, v. 15, n. 8, p. 761, doi. 10.1080/088395101317018591

By:

Saitta, Lorenza;
Zucker, Jean-Daniel

Publication type:

Article

RELATIONAL KNOWLEDGE DISCOVERY IN A CHINESE CHARACTER DATABASE.

Published in:

Applied Artificial Intelligence, 1998, v. 12, n. 5, p. 455, doi. 10.1080/088395198117712

By:

Zucker, Jean-Daniel;
Ganascia, Jean-Gabriel;
Bournaud, Isabelle

Publication type:

Article

Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs.

Published in:

BMC Medical Genomics, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s12920-024-01978-5

By:

Belda, Eugeni;
Capeau, Jacqueline;
Zucker, Jean-Daniel;
Chatelier, Emmanuelle Le;
Pons, Nicolas;
Oñate, Florian Plaza;
Quinquis, Benoit;
Alili, Rohia;
Fellahi, Soraya;
Katlama, Christine;
Clément, Karine;
Fève, Bruno;
Jaureguiberry, Stéphane;
Goujard, Cécile;
Lambotte, Olivier;
Doré, Joël;
Prifti, Edi;
Bastard, Jean-Philippe

Publication type:

Article

`Cathepsin S, a novel biomarker of adiposity: relevance to atherogenesis.

Published in:

FASEB Journal, 2005, v. 19, n. 11, p. 1540, doi. 10.1096/fj.05-3673fje

By:

Taleb, Soraya;
Lacasa, Danièle;
Bastard, Jean-Philippe;
Poitou, Christine;
Cancello, Raffaella;
Pelloux, Veronique;
Viguerie, Nathalie;
Benis, Arriel;
Zucker, Jean-Daniel;
Bouillot, Jean-Luc;
Coussieu, Christiane;
Basdevant, Arnaud;
Langin, Dominique;
Clement, Karine

Publication type:

Article

Weight loss regulates inflammation-related genes in white adipose tissue of obese subjects.

Published in:

FASEB Journal, 2004, v. 18, n. 14, p. 1657, doi. 10.1096/fj.04-2204com

By:

Clément, Karine;
Viguerie, Nathalie;
Sicard, Audrey;
Poitou, Christine;
Carette, Claire;
Pelloux, Véronique;
Basdevant, Arnaud;
Cancello, Raffaella;
Curat, Cyrile A.;
Rome, Sophie;
Vidal, Hubert;
Laville, Martine;
Benis, Arriel;
Zucker, Jean-Daniel;
Barsh, Gregory S.;
Stich, Vladimir;
Langin, Dominique

Publication type:

Article

Fibrosis in Human Adipose Tissue: Composition, Distribution, and Link With Lipid Metabolism and Fat Mass Loss.

Published in:

Diabetes, 2010, v. 59, n. 11, p. 2817, doi. 10.2337/db10-0585

By:

Divoux, Adeline;
Tordjman, Joan;
Lacasa, Danièle;
Veyrie, Nicolas;
Hugol, Danielle;
Aissat, Abdelhalim;
Basdevant, Arnaud;
Guerre-Millo, Michèle;
Poitou, Christine;
Zucker, Jean-Daniel;
Bedossa, Pierre;
Clement, Karine

Publication type:

Article

Reduction of Macrophage Infiltration and Chemoattractant Gene Expression Changes in White Adipose Tissue of Morbidly Obese Subjects After Surgery-Induced Weight Loss.

Published in:

Diabetes, 2005, v. 54, n. 8, p. 2277, doi. 10.2337/diabetes.54.8.2277

By:

Cancello, Raffaella;
Henegar, Corneliu;
Viguerie, Nathalie;
Taleb, Soraya;
Poitou, Christine;
Rouault, Christine;
Coupaye, Muriel;
Pelloux, Veronique;
Hugol, Danielle;
Bouillot, Jean-Luc;
Bouloumié, Anne;
Barbatelli, Giorgio;
Cinti, Saverio;
Svensson, Per-Arne;
Barsh, Gregory S.;
Zucker, Jean-Daniel;
Basdevant, Arnaud;
Langin, Dominique;
Clément, Karine

Publication type:

Article

Sparse Zero-Sum Games as Stable Functional Feature Selection.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0134683

By:

Sokolovska, Nataliya;
Teytaud, Olivier;
Rizkalla, Salwa;
null, null;
Clément, Karine;
Zucker, Jean-Daniel

Publication type:

Article

Dietary Patterns Differently Associate with Inflammation and Gut Microbiota in Overweight and Obese Subjects.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109434

By:

Kong, Ling Chun;
Holmes, Bridget A.;
Cotillard, Aurelie;
Habi-Rachedi, Fatiha;
Brazeilles, Rémi;
Gougis, Sophie;
Gausserès, Nicolas;
Cani, Patrice D.;
Fellahi, Soraya;
Bastard, Jean-Philippe;
Kennedy, Sean P.;
Doré, Joel;
Ehrlich, Stanislav Dusko;
Zucker, Jean-Daniel;
Rizkalla, Salwa W.;
Clément, Karine

Publication type:

Article

The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries?

Published in:

2014

By:

Roche, Benjamin;
Broutin, Hélène;
Choisy, Marc;
Godreuil, Sylvain;
de Magny, Guillaume Constantin;
Chevaleyre, Yann;
Zucker, Jean-Daniel;
Breban, Romulus;
Cazelles, Bernard;
Simard, Frédéric

Publication type:

journal article

Corrigendum: Dietary intervention impact on gut microbial gene richness.

Published in:

Nature, 2013, v. 502, n. 7472, p. 580, doi. 10.1038/nature12738

By:

Cotillard, Aurélie;
Kennedy, Sean P.;
Kong, Ling Chun;
Prifti, Edi;
Pons, Nicolas;
Le Chatelier, Emmanuelle;
Almeida, Mathieu;
Quinquis, Benoit;
Levenez, Florence;
Galleron, Nathalie;
Gougis, Sophie;
Rizkalla, Salwa;
Batto, Jean-Michel;
Renault, Pierre;
consortium, ANR MicroObes;
Doré, Joel;
Zucker, Jean-Daniel;
Clément, Karine;
Ehrlich, Stanislav Dusko

Publication type:

Article

Dietary intervention impact on gut microbial gene richness.

Published in:

Nature, 2013, v. 500, n. 7464, p. 585, doi. 10.1038/nature12480

By:

Cotillard, Aurélie;
Kennedy, Sean P.;
Kong, Ling Chun;
Prifti, Edi;
Pons, Nicolas;
Le Chatelier, Emmanuelle;
Almeida, Mathieu;
Quinquis, Benoit;
Levenez, Florence;
Galleron, Nathalie;
Gougis, Sophie;
Rizkalla, Salwa;
Batto, Jean-Michel;
Renault, Pierre;
consortium, ANR MicroObes;
Doré, Joel;
Zucker, Jean-Daniel;
Clément, Karine;
Ehrlich, Stanislav Dusko;
Blottière, Hervé

Publication type:

Article

Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94916-9

By:

Bel Lassen, Pierre;
Belda, Eugeni;
Prifti, Edi;
Dao, Maria Carlota;
Specque, Florian;
Henegar, Corneliu;
Rinaldi, Laure;
Wang, Xuedan;
Kennedy, Sean P.;
Zucker, Jean-Daniel;
Calame, Wim;
Lamarche, Benoît;
Claus, Sandrine P.;
Clément, Karine

Publication type:

Article

Deep learning analysis of electrocardiogram for risk prediction of drug-induced arrhythmias and diagnosis of long QT syndrome.

Published in:

European Heart Journal, 2021, v. 42, n. 38, p. 3948, doi. 10.1093/eurheartj/ehab588

By:

Prifti, Edi;
Fall, Ahmad;
Davogustto, Giovanni;
Pulini, Alfredo;
Denjoy, Isabelle;
Funck-Brentano, Christian;
Khan, Yasmin;
Durand-Salmon, Alexandre;
Badilini, Fabio;
Wells, Quinn S;
Leenhardt, Antoine;
Zucker, Jean-Daniel;
Roden, Dan M;
Extramiana, Fabrice;
Salem, Joe-Elie

Publication type:

Article

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity.

Published in:

Frontiers in Physiology, 2019, p. N.PAG, doi. 10.3389/fphys.2018.01958

By:

Dao, Maria Carlota;
Sokolovska, Nataliya;
Brazeilles, Rémi;
Affeldt, Séverine;
Pelloux, Véronique;
Prifti, Edi;
Chilloux, Julien;
Verger, Eric O.;
Kayser, Brandon D.;
Aron-Wisnewsky, Judith;
Ichou, Farid;
Pujos-Guillot, Estelle;
Hoyles, Lesley;
Juste, Catherine;
Doré, Joël;
Dumas, Marc-Emmanuel;
Rizkalla, Salwa W.;
Holmes, Bridget A.;
Zucker, Jean-Daniel;
Clément, Karine

Publication type:

Article

Exploring multi-modal evacuation strategies for a landlocked population using large-scale agent-based simulations.

Published in:

International Journal of Geographical Information Science, 2022, v. 36, n. 9, p. 1741, doi. 10.1080/13658816.2022.2069774

By:

Chapuis, Kevin;
Minh-Duc, Pham;
Brugière, Arthur;
Zucker, Jean-Daniel;
Drogoul, Alexis;
Tranouez, Pierrick;
Daudé, Éric;
Taillandier, Patrick

Publication type:

Article