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A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset.
- Published in:
- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01820-5
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- Publication type:
- Article
The International Oryza Map Alignment Project (IOMAP): the Americas—past achievements and future directions.
- Published in:
- Journal of Experimental Botany, 2023, v. 74, n. 5, p. 1331, doi. 10.1093/jxb/erac490
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- Publication type:
- Article
The gyrfalcon (Falco rusticolus) genome.
- Published in:
- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 3, p. 1, doi. 10.1093/g3journal/jkad001
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- Publication type:
- Article
Genome‐wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.).
- Published in:
- Plant Journal, 2023, v. 113, n. 4, p. 734, doi. 10.1111/tpj.16078
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- Publication type:
- Article
DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows.
- Published in:
- Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab228
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- Publication type:
- Article
Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice.
- Published in:
- Frontiers in Plant Science, 2020, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.579980
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- Publication type:
- Article
A draft genome of sweet cherry (Prunus avium L.) reveals genome‐wide and local effects of domestication.
- Published in:
- Plant Journal, 2020, v. 103, n. 4, p. 1420, doi. 10.1111/tpj.14809
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- Publication type:
- Article
Epigenetic patterns within the haplotype phased fig (Ficus carica L.) genome.
- Published in:
- Plant Journal, 2020, v. 102, n. 3, p. 600, doi. 10.1111/tpj.14635
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- Publication type:
- Article
A platinum standard pan-genome resource that represents the population structure of Asian rice.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0438-2
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- Publication type:
- Article
LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 12, p. 3449, doi. 10.1093/gbe/evx260
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- Publication type:
- Article
Genomic skimming for identification of medium/highly abundant transposable elements in Arundo donax and Arundo plinii.
- Published in:
- Molecular Genetics & Genomics, 2017, v. 292, n. 1, p. 157, doi. 10.1007/s00438-016-1263-3
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- Publication type:
- Article
DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.
- Published in:
- Nature Communications, 2016, v. 7, n. 9, p. 12790, doi. 10.1038/ncomms12790
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- Publication type:
- Article
Extreme Hypoxic Conditions Induce Selective Molecular Responses and Metabolic Reset in Detached Apple Fruit.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00146
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- Publication type:
- Article
Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome.
- Published in:
- BMC Plant Biology, 2016, v. 16, p. 1, doi. 10.1186/s12870-016-0725-4
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- Publication type:
- Article
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology.
- Published in:
- 2015
- By:
- Publication type:
- Product Review
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 538, doi. 10.1186/s12864-015-1762-3
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- Publication type:
- Article
Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera.
- Published in:
- BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12870-014-0220-8
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- Publication type:
- Article
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
- Published in:
- Nature Genetics, 2014, v. 46, n. 9, p. 982, doi. 10.1038/ng.3044
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- Publication type:
- Article
Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 801, doi. 10.1186/1471-2164-15-801
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- Publication type:
- Article
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 7, p. 656, doi. 10.1038/nbt.2906
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- Publication type:
- Article
Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
- Published in:
- BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-95
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- Publication type:
- Article
The Norway spruce genome sequence and conifer genome evolution.
- Published in:
- Nature, 2013, v. 497, n. 7451, p. 579, doi. 10.1038/nature12211
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- Publication type:
- Article
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
- Published in:
- Nature Genetics, 2013, v. 45, n. 5, p. 487, doi. 10.1038/ng.2586
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- Publication type:
- Article
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.
- Published in:
- Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r48
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- Publication type:
- Article
Assessing the Extent of Substitution Rate Variation of Retrotransposon Long Terminal Repeat Sequences in Oryza sativa and Oryza glaberrima.
- Published in:
- Rice (19398425), 2010, v. 3, n. 4, p. 242, doi. 10.1007/s12284-010-9046-7
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- Publication type:
- Article
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.
- Published in:
- Plant Journal, 2010, v. 63, n. 6, p. 990, doi. 10.1111/j.1365-313X.2010.04293.x
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- Publication type:
- Article
Analysis of transposons and repeat composition of the sunflower ( Helianthus annuus L.) genome.
- Published in:
- Theoretical & Applied Genetics, 2010, v. 120, n. 3, p. 491, doi. 10.1007/s00122-009-1170-7
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- Publication type:
- Article
Rapid and Differential Proliferation of the Ty3- Gypsy LTR Retrotransposon Atlantys in the Genus Oryza.
- Published in:
- Rice (19398425), 2008, v. 1, n. 1, p. 85, doi. 10.1007/s12284-008-9002-y
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- Publication type:
- Article
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.
- Published in:
- Plant Journal, 2007, v. 52, n. 2, p. 342, doi. 10.1111/j.1365-313X.2007.03242.x
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- Publication type:
- Article
RetrOryza: a database of the rice LTR-retrotransposons.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d66, doi. 10.1093/nar/gkl780
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- Publication type:
- Article
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
- Published in:
- 2005
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- Publication type:
- Letter