Found: 19

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  • Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32229-9
    By:
    • Schmidt, Sebastian;
    • Luecken, Malte D.;
    • Trümbach, Dietrich;
    • Hembach, Sina;
    • Niedermeier, Kristina M.;
    • Wenck, Nicole;
    • Pflügler, Klaus;
    • Stautner, Constantin;
    • Böttcher, Anika;
    • Lickert, Heiko;
    • Ramirez-Suastegui, Ciro;
    • Ahmad, Ruhel;
    • Ziller, Michael J.;
    • Fitzgerald, Julia C.;
    • Ruf, Viktoria;
    • van de Berg, Wilma D. J.;
    • Jonker, Allert J.;
    • Gasser, Thomas;
    • Winner, Beate;
    • Winkler, Jürgen
    Publication type:
    Article

  • Expression of Lineage Transcription Factors Identifies Differences in Transition States of Induced Human Oligodendrocyte Differentiation.

    Published in:
    Cells (2073-4409), 2022, v. 11, n. 2, p. 241, doi. 10.3390/cells11020241
    By:
    • Raabe, Florian J.;
    • Stephan, Marius;
    • Waldeck, Jan Benedikt;
    • Huber, Verena;
    • Demetriou, Damianos;
    • Kannaiyan, Nirmal;
    • Galinski, Sabrina;
    • Glaser, Laura V.;
    • Wehr, Michael C.;
    • Ziller, Michael J.;
    • Schmitt, Andrea;
    • Falkai, Peter;
    • Rossner, Moritz J.
    Publication type:
    Article

  • A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06398-5
    By:
    • Sheng, Chao;
    • Jungverdorben, Johannes;
    • Wiethoff, Hendrik;
    • Lin, Qiong;
    • Flitsch, Lea J.;
    • Eckert, Daniela;
    • Hebisch, Matthias;
    • Fischer, Julia;
    • Kesavan, Jaideep;
    • Weykopf, Beatrice;
    • Schneider, Linda;
    • Holtkamp, Dominik;
    • Beck, Heinz;
    • Till, Andreas;
    • Wüllner, Ullrich;
    • Ziller, Michael J.;
    • Wagner, Wolfgang;
    • Peitz, Michael;
    • Brüstle, Oliver
    Publication type:
    Article

  • Genome-wide tracking of dCas9-methyltransferase footprints.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02708-5
    By:
    • Galonska, Christina;
    • Charlton, Jocelyn;
    • Mattei, Alexandra L.;
    • Donaghey, Julie;
    • Clement, Kendell;
    • Hongcang Gu;
    • Mohammad, Arman W.;
    • Stamenova, Elena K.;
    • Cacchiarelli, Davide;
    • Klages, Sven;
    • Timmermann, Bernd;
    • Cantz, Tobias;
    • Schöler, Hans R.;
    • Gnirke, Andreas;
    • Ziller, Michael J.;
    • Meissner, Alexander
    Publication type:
    Article

  • Targeted bisulfite sequencing of the dynamic DNA methylome.

    Published in:
    Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-016-0105-1
    By:
    • Ziller, Michael J.;
    • Stamenova, Elena K.;
    • Hongcang Gu;
    • Gnirke, Andreas;
    • Meissner, Alexander
    Publication type:
    Article

  • Saturation analysis for whole-genome bisulfite sequencing data.

    Published in:
    Nature Biotechnology, 2016, v. 34, n. 7, p. 691, doi. 10.1038/nbt.3524
    By:
    • Libertini, Emanuele;
    • Heath, Simon C;
    • Hamoudi, Rifat A;
    • Gut, Marta;
    • Ziller, Michael J;
    • Herrero, Javier;
    • Czyz, Agata;
    • Ruotti, Victor;
    • Stunnenberg, Hendrik G;
    • Frontini, Mattia;
    • Ouwehand, Willem H;
    • Meissner, Alexander;
    • Gut, Ivo G;
    • Beck, Stephan
    Publication type:
    Article

  • Information recovery from low coverage whole-genome bisulfite sequencing.

    Published in:
    Nature Communications, 2016, v. 7, n. 6, p. 11306, doi. 10.1038/ncomms11306
    By:
    • Libertini, Emanuele;
    • Heath, Simon C.;
    • Hamoudi, Rifat A.;
    • Gut, Marta;
    • Ziller, Michael J.;
    • Czyz, Agata;
    • Ruotti, Victor;
    • Stunnenberg, Hendrik G.;
    • Frontini, Mattia;
    • Ouwehand, Willem H.;
    • Meissner, Alexander;
    • Gut, Ivo G.;
    • Beck, Stephan
    Publication type:
    Article

  • Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells.

    Published in:
    Nature Genetics, 2015, v. 47, n. 5, p. 469, doi. 10.1038/ng.3258
    By:
    • Liao, Jing;
    • Karnik, Rahul;
    • Ziller, Michael J;
    • Clement, Kendell;
    • Tsankov, Alexander M;
    • Akopian, Veronika;
    • Gifford, Casey A;
    • Donaghey, Julie;
    • Galonska, Christina;
    • Pop, Ramona;
    • Mallard, William;
    • Rinn, John L;
    • Meissner, Alexander;
    • Gu, Hongcang;
    • Gnirke, Andreas;
    • Reyon, Deepak;
    • Tsai, Shengdar Q;
    • Joung, J Keith
    Publication type:
    Article

  • Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors.

    Published in:
    Nature Communications, 2015, v. 6, n. 3, p. 6500, doi. 10.1038/ncomms7500
    By:
    • Edri, Reuven;
    • Yaffe, Yakey;
    • Ziller, Michael J.;
    • Mutukula, Naresh;
    • Volkman, Rotem;
    • David, Eyal;
    • Jacob-Hirsch, Jasmine;
    • Malcov, Hagar;
    • Levy, Carmit;
    • Rechavi, Gideon;
    • Gat-Viks, Irit;
    • Meissner, Alexander;
    • Elkabetz, Yechiel
    Publication type:
    Article

  • Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing.

    Published in:
    Nature Methods, 2015, v. 12, n. 3, p. 230, doi. 10.1038/nmeth.3152
    By:
    • Ziller, Michael J;
    • Hansen, Kasper D;
    • Meissner, Alexander;
    • Aryee, Martin J
    Publication type:
    Article

  • Integrative analysis of 111 reference human epigenomes.

    Published in:
    Nature, 2015, v. 518, n. 7539, p. 317, doi. 10.1038/nature14248
    By:
    • Roadmap Epigenomics Consortium;
    • Kundaje, Anshul;
    • Meuleman, Wouter;
    • Ernst, Jason;
    • Bilenky, Misha;
    • Yen, Angela;
    • Heravi-Moussavi, Alireza;
    • Kheradpour, Pouya;
    • Zhang, Zhizhuo;
    • Wang, Jianrong;
    • Ziller, Michael J.;
    • Amin, Viren;
    • Whitaker, John W.;
    • Schultz, Matthew D.;
    • Ward, Lucas D.;
    • Sarkar, Abhishek;
    • Quon, Gerald;
    • Sandstrom, Richard S.;
    • Eaton, Matthew L.;
    • Wu, Yi-Chieh
    Publication type:
    Article

  • Transcription factor binding dynamics during human ES cell differentiation.

    Published in:
    Nature, 2015, v. 518, n. 7539, p. 344, doi. 10.1038/nature14233
    By:
    • Tsankov, Alexander M.;
    • Gu, Hongcang;
    • Akopian, Veronika;
    • Ziller, Michael J.;
    • Donaghey, Julie;
    • Amit, Ido;
    • Gnirke, Andreas;
    • Meissner, Alexander
    Publication type:
    Article

  • Dissecting neural differentiation regulatory networks through epigenetic footprinting.

    Published in:
    Nature, 2015, v. 518, n. 7539, p. 355, doi. 10.1038/nature13990
    By:
    • Ziller, Michael J.;
    • Edri, Reuven;
    • Yaffe, Yakey;
    • Donaghey, Julie;
    • Pop, Ramona;
    • Mallard, William;
    • Issner, Robbyn;
    • Gifford, Casey A.;
    • Goren, Alon;
    • Xing, Jeffrey;
    • Gu, Hongcang;
    • Cacchiarelli, Davide;
    • Tsankov, Alexander M.;
    • Epstein, Charles;
    • Rinn, John L.;
    • Mikkelsen, Tarjei S.;
    • Kohlbacher, Oliver;
    • Gnirke, Andreas;
    • Bernstein, Bradley E.;
    • Elkabetz, Yechiel
    Publication type:
    Article

  • Charting a dynamic DNA methylation landscape of the human genome.

    Published in:
    Nature, 2013, v. 500, n. 7463, p. 477, doi. 10.1038/nature12433
    By:
    • Ziller, Michael J.;
    • Gu, Hongcang;
    • Müller, Fabian;
    • Donaghey, Julie;
    • Tsai, Linus T.-Y.;
    • Kohlbacher, Oliver;
    • De Jager, Philip L.;
    • Rosen, Evan D.;
    • Bennett, David A.;
    • Bernstein, Bradley E.;
    • Gnirke, Andreas;
    • Meissner, Alexander
    Publication type:
    Article

  • The systems biology simulation core algorithm.

    Published in:
    BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-55
    By:
    • Keller, Roland;
    • Dörr, Alexander;
    • Tabira, Akito;
    • Funahashi, Akira;
    • Ziller, Michael J.;
    • Adams, Richard;
    • Rodriguez, Nicolas;
    • Novère, Nicolas Le;
    • Hiroi, Noriko;
    • Planatscher, Hannes;
    • Zell, Andreas;
    • Dräger, Andreas
    Publication type:
    Article

  • Epigenomics and chromatin dynamics

    Published in:
    Genome Biology, 2012, v. 13, n. 2, p. 313, doi. 10.1186/1465-6906-13-
    By:
    • Akopian, Veronika;
    • Chan, Michelle M;
    • Clement, Kendell;
    • Galonska, Christina;
    • Gifford, Casey A;
    • Lehtola, Elizabeth;
    • Liao, Jing;
    • Samavarchi-Tehrani, Payman;
    • Sindhu, Camille;
    • Smith, Zachary D;
    • Tsankov, Alexander M;
    • Webster, Jamie;
    • Yingying Zhang;
    • Ziller, Michael J;
    • Meissner, Alexander
    Publication type:
    Article

  • Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types.

    Published in:
    PLoS Genetics, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pgen.1002389
    By:
    • Ziller, Michael J.;
    • Müller, Fabian;
    • Jing Liao;
    • Yingying Zhang;
    • Hongcang Gu;
    • Bock, Christoph;
    • Boyle, Patrick;
    • Epstein, Charles B.;
    • Bernstein, Bradley E.;
    • Lengauer, Thomas;
    • Gnirke, Andreas;
    • Meissner, Alexander
    Publication type:
    Article

  • Universality of protein reentrant condensation in solution induced by multivalent metal ions.

    Published in:
    Proteins, 2010, v. 78, n. 16, p. 3450, doi. 10.1002/prot.22852
    By:
    • Zhang, Fajun;
    • Weggler, Sophie;
    • Ziller, Michael J.;
    • Ianeselli, Luca;
    • Heck, Benjamin S.;
    • Hildebrandt, Andreas;
    • Kohlbacher, Oliver;
    • Skoda, Maximilian W. A.;
    • Jacobs, Robert M. J.;
    • Schreiber, Frank
    Publication type:
    Article

  • Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies.

    Published in:
    BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-5
    By:
    • Dräger, Andreas;
    • Kronfeld, Marcel;
    • Ziller, Michael J.;
    • Supper, Jochen;
    • Planatscher, Hannes;
    • Magnus, Jørgen B.;
    • Oldiges, Marco;
    • Kohlbacher, Oliver;
    • Zell, Andreas
    Publication type:
    Article