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Ly6D+Siglec-H+ precursors contribute to conventional dendritic cells via a Zbtb46+Ly6D+ intermediary stage.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31054-4
By:
- Lutz, Konstantin;
- Musumeci, Andrea;
- Sie, Christopher;
- Dursun, Ezgi;
- Winheim, Elena;
- Bagnoli, Johannes;
- Ziegenhain, Christoph;
- Rausch, Lisa;
- Bergen, Volker;
- Luecken, Malte D.;
- Oostendorp, Robert A. J.;
- Schraml, Barbara U.;
- Theis, Fabian J.;
- Enard, Wolfgang;
- Korn, Thomas;
- Krug, Anne B.
Publication type:
Article
BAMboozle removes genetic variation from human sequence data for open data sharing.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26152-8
By:
- Ziegenhain, Christoph;
- Sandberg, Rickard
Publication type:
Article
Scalable single-cell RNA sequencing from full transcripts with Smart-seq3xpress.
Published in:
Nature Biotechnology, 2022, v. 40, n. 10, p. 1452, doi. 10.1038/s41587-022-01311-4
By:
- Hagemann-Jensen, Michael;
- Ziegenhain, Christoph;
- Sandberg, Rickard
Publication type:
Article
Single-cell RNA counting at allele and isoform resolution using Smart-seq3.
Published in:
Nature Biotechnology, 2020, v. 38, n. 6, p. 708, doi. 10.1038/s41587-020-0497-0
By:
- Hagemann-Jensen, Michael;
- Ziegenhain, Christoph;
- Chen, Ping;
- Ramsköld, Daniel;
- Hendriks, Gert-Jan;
- Larsson, Anton J. M.;
- Faridani, Omid R.;
- Sandberg, Rickard
Publication type:
Article
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.
Published in:
Nature Biotechnology, 2020, v. 38, n. 6, p. 747, doi. 10.1038/s41587-020-0469-4
By:
- Mereu, Elisabetta;
- Lafzi, Atefeh;
- Moutinho, Catia;
- Ziegenhain, Christoph;
- McCarthy, Davis J.;
- Álvarez-Varela, Adrián;
- Batlle, Eduard;
- Sagar;
- Grün, Dominic;
- Lau, Julia K.;
- Boutet, Stéphane C.;
- Sanada, Chad;
- Ooi, Aik;
- Jones, Robert C.;
- Kaihara, Kelly;
- Brampton, Chris;
- Talaga, Yasha;
- Sasagawa, Yohei;
- Tanaka, Kaori;
- Hayashi, Tetsutaro
Publication type:
Article
The impact of amplification on differential expression analyses by RNA-seq.
Published in:
Scientific Reports, 2016, p. 25533, doi. 10.1038/srep25533
By:
- Parekh, Swati;
- Ziegenhain, Christoph;
- Vieth, Beate;
- Enard, Wolfgang;
- Hellmann, Ines
Publication type:
Article
zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.
Published in:
GigaScience, 2018, v. 7, n. 6, p. N.PAG, doi. 10.1093/gigascience/giy059
By:
- Parekh, Swati;
- Ziegenhain, Christoph;
- Vieth, Beate;
- Enard, Wolfgang;
- Hellmann, Ines
Publication type:
Article
Prime-seq, efficient and powerful bulk RNA sequencing.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02660-8
By:
- Janjic, Aleksandar;
- Wange, Lucas E.;
- Bagnoli, Johannes W.;
- Geuder, Johanna;
- Nguyen, Phong;
- Richter, Daniel;
- Vieth, Beate;
- Vick, Binje;
- Jeremias, Irmela;
- Ziegenhain, Christoph;
- Hellmann, Ines;
- Enard, Wolfgang
Publication type:
Article
A systematic evaluation of single cell RNA-seq analysis pipelines.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12266-7
By:
- Vieth, Beate;
- Parekh, Swati;
- Ziegenhain, Christoph;
- Enard, Wolfgang;
- Hellmann, Ines
Publication type:
Article
Actin stabilizing compounds show specific biological effects due to their binding mode.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46282-w
By:
- Wang, Shuaijun;
- Crevenna, Alvaro H.;
- Ugur, Ilke;
- Marion, Antoine;
- Antes, Iris;
- Kazmaier, Uli;
- Hoyer, Maria;
- Lamb, Don C.;
- Gegenfurtner, Florian;
- Kliesmete, Zane;
- Ziegenhain, Christoph;
- Enard, Wolfgang;
- Vollmar, Angelika;
- Zahler, Stefan
Publication type:
Article
Transcriptional effects of actin-binding compounds: the cytoplasm sets the tone.
Published in:
Cellular & Molecular Life Sciences, 2018, v. 75, n. 24, p. 4539, doi. 10.1007/s00018-018-2919-4
By:
- Gegenfurtner, Florian A.;
- Zisis, Themistoklis;
- Al Danaf, Nader;
- Schrimpf, Waldemar;
- Kliesmete, Zane;
- Ziegenhain, Christoph;
- Enard, Wolfgang;
- Kazmaier, Uli;
- Lamb, Don C.;
- Vollmar, Angelika M.;
- Zahler, Stefan
Publication type:
Article
c-Rel gain in B cells drives germinal center reactions and autoantibody production.
Published in:
2020
By:
- Kober-Hasslacher, Maike;
- Oh-Strauß, Hyunju;
- Kumar, Dilip;
- Soberon, Valeria;
- Diehl, Carina;
- Lech, Maciej;
- Engleitner, Thomas;
- Katab, Eslam;
- Fernández-Sáiz, Vanesa;
- Piontek, Guido;
- Li, Hongwei;
- Menze, Björn;
- Ziegenhain, Christoph;
- Enard, Wolfgang;
- Rad, Roland;
- Böttcher, Jan P.;
- Anders, Hans-Joachim;
- Rudelius, Martina;
- Schmidt-Supprian, Marc
Publication type:
journal article
Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network.
Published in:
Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03135-0
By:
- Hunt, George;
- Vaid, Roshan;
- Pirogov, Sergei;
- Pfab, Alexander;
- Ziegenhain, Christoph;
- Sandberg, Rickard;
- Reimegård, Johan;
- Mannervik, Mattias
Publication type:
Article
Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008772
By:
- Larsson, Anton J. M.;
- Ziegenhain, Christoph;
- Hagemann-Jensen, Michael;
- Reinius, Björn;
- Jacob, Tina;
- Dalessandri, Tim;
- Hendriks, Gert-Jan;
- Kasper, Maria;
- Sandberg, Rickard
Publication type:
Article
Altered social behavior in mice carrying a cortical Foxp2 deletion.
Published in:
Human Molecular Genetics, 2019, v. 28, n. 5, p. 701, doi. 10.1093/hmg/ddy372
By:
- Medvedeva, Vera P;
- Rieger, Michael A;
- Vieth, Beate;
- Mombereau, Cédric;
- Ziegenhain, Christoph;
- Ghosh, Tanay;
- Cressant, Arnaud;
- Enard, Wolfgang;
- Granon, Sylvie;
- Dougherty, Joseph D;
- Groszer, Matthias
Publication type:
Article
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05347-6
By:
- Bagnoli, Johannes W.;
- Ziegenhain, Christoph;
- Janjic, Aleksandar;
- Wange, Lucas E.;
- Vieth, Beate;
- Parekh, Swati;
- Geuder, Johanna;
- Hellmann, Ines;
- Enard, Wolfgang
Publication type:
Article
Quantitative single-cell transcriptomics.
Published in:
Briefings in Functional Genomics, 2018, v. 17, n. 4, p. 220, doi. 10.1093/bfgp/ely009
By:
- Ziegenhain, Christoph;
- Vieth, Beate;
- Parekh, Swati;
- Hellmann, Ines;
- Enard, Wolfgang
Publication type:
Article
powsimR: power analysis for bulk and single cell RNA-seq experiments.
Published in:
Bioinformatics, 2017, v. 33, n. 21, p. 3486, doi. 10.1093/bioinformatics/btx435
By:
- Vieth, Beate;
- Ziegenhain, Christoph;
- Parekh, Swati;
- Enard, Wolfgang;
- Hellmann, Ines
Publication type:
Article
Author Correction: Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.
Published in:
2020
By:
- Mulholland, Christopher B.;
- Nishiyama, Atsuya;
- Ryan, Joel;
- Nakamura, Ryohei;
- Yiğit, Merve;
- Glück, Ivo M.;
- Trummer, Carina;
- Qin, Weihua;
- Bartoschek, Michael D.;
- Traube, Franziska R.;
- Parsa, Edris;
- Ugur, Enes;
- Modic, Miha;
- Acharya, Aishwarya;
- Stolz, Paul;
- Ziegenhain, Christoph;
- Wierer, Michael;
- Enard, Wolfgang;
- Carell, Thomas;
- Lamb, Don C.
Publication type:
Correction Notice
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19603-1
By:
- Mulholland, Christopher B.;
- Nishiyama, Atsuya;
- Ryan, Joel;
- Nakamura, Ryohei;
- Yiğit, Merve;
- Glück, Ivo M.;
- Trummer, Carina;
- Qin, Weihua;
- Bartoschek, Michael D.;
- Traube, Franziska R.;
- Parsa, Edris;
- Ugur, Enes;
- Modic, Miha;
- Acharya, Aishwarya;
- Stolz, Paul;
- Ziegenhain, Christoph;
- Wierer, Michael;
- Enard, Wolfgang;
- Carell, Thomas;
- Lamb, Don C.
Publication type:
Article

Found: 20

Ly6D<sup>+</sup>Siglec-H<sup>+</sup> precursors contribute to conventional dendritic cells via a Zbtb46<sup>+</sup>Ly6D<sup>+</sup> intermediary stage.

BAMboozle removes genetic variation from human sequence data for open data sharing.

Scalable single-cell RNA sequencing from full transcripts with Smart-seq3xpress.

Single-cell RNA counting at allele and isoform resolution using Smart-seq3.

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.

The impact of amplification on differential expression analyses by RNA-seq.

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.

Prime-seq, efficient and powerful bulk RNA sequencing.

A systematic evaluation of single cell RNA-seq analysis pipelines.

Actin stabilizing compounds show specific biological effects due to their binding mode.

Transcriptional effects of actin-binding compounds: the cytoplasm sets the tone.

c-Rel gain in B cells drives germinal center reactions and autoantibody production.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network.

Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance.

Altered social behavior in mice carrying a cortical Foxp2 deletion.

Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq.

Quantitative single-cell transcriptomics.

powsimR: power analysis for bulk and single cell RNA-seq experiments.

Author Correction: Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.