Works by Zhu, Yunping

Results: 114

Haplotype Structure and Evidence for Positive Selection at the Human IL13 Locus.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 1, p. 29

By:

Gangqiao Zhou;
Yun Zhai;
Xiaojia Dong;
Xiumei Zhang;
Fengying He;
Kaixin Zhou;
Yunping Zhu;
Handong Wei;
Zhijian Yao;
Shaofei Zhong;
Yan Shen;
Boqing Qiang;
Fuchu He

Publication type:

Article

Stability, structure, and antioxidant activity of astaxanthin crystal from Haematococcus pluvialis.

Published in:

Journal of the American Oil Chemists' Society (JAOCS), 2022, v. 99, n. 5, p. 367, doi. 10.1002/aocs.12587

By:

Zhang, Xiaowei;
Ren, Xiangrui;
Zhao, Xiaoyan;
Liu, Hongkai;
Wang, Meng;
Zhu, Yunping

Publication type:

Article

LiverAtlas: a unique integrated knowledge database for systems-level research of liver and hepatic disease.

Published in:

Liver International, 2013, v. 33, n. 8, p. 1239, doi. 10.1111/liv.12173

By:

Zhang, Yanqiong;
Yang, Chunyuan;
Wang, Shaochuang;
Chen, Tao;
Li, Mansheng;
Wang, Xue;
Li, Dongsheng;
Wang, Kang;
Ma, Jie;
Wu, Songfeng;
Zhang, Xueli;
Zhu, Yunping;
Wu, Jinsheng;
He, Fuchu

Publication type:

Article

Dynamic atlas of immune cells reveals multiple functional features of macrophages associated with progression of pulmonary fibrosis.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1230266

By:

Jiaoyan Lv;
Haoxiang Gao;
Jie Ma;
Jiachen Liu;
Yujie Tian;
Chunyuan Yang;
Mansheng Li;
Yue Zhao;
Zhimin Li;
Xuegong Zhang;
Yunping Zhu;
Jianhong Zhang;
Li Wu

Publication type:

Article

CD247 can bind SHC1, no matter if CD247 is phosphorylated.

Published in:

Journal of Molecular Recognition, 2009, v. 22, n. 3, p. 205, doi. 10.1002/jmr.933

By:

Liu, Tao;
Chen, Fangjin;
Tang, Ning;
Feng, Jiannan;
Zhao, Dongsheng;
Wei, Kaihua;
Zhu, Yunping;
He, Fuchu;
Liu, Shaojun

Publication type:

Article

Both Wnt signaling and epidermal stem cell-derived extracellular vesicles are involved in epidermal cell growth.

Published in:

Stem Cell Research & Therapy, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13287-020-01933-y

By:

Leng, Ling;
Ma, Jie;
Lv, Luye;
Wang, Wenjuan;
Gao, Dunqin;
Zhu, Yunping;
Wu, Zhihong

Publication type:

Article

The "Matrisome" reveals the characterization of skin keloid microenvironment.

Published in:

FASEB Journal, 2021, v. 35, n. 4, p. 1, doi. 10.1096/fj.202001660RR

By:

Shikun Zhang;
Binghui Liu;
Wenjuan Wang;
Luye Lv;
Dunqin Gao;
Mi Chai;
Mansheng Li;
Zhihong Wu;
Yunping Zhu;
Jie Ma;
Ling Leng

Publication type:

Article

Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy.

Published in:

Proteomics, 2008, v. 8, n. 10, p. 2024, doi. 10.1002/pmic.200700896

By:

Sui, Shaohui;
Wang, Jinglan;
Yang, Bing;
Song, Lina;
Zhang, Jiyang;
Chen, Ming;
Liu, Jinfeng;
Lu, Zhuang;
Cai, Yun;
Chen, Shuo;
Bi, Wei;
Zhu, Yunping;
He, Fuchu;
Qian, Xiaohong

Publication type:

Article

A new strategy to filter out false positive identifications of peptides in SEQUEST database search results.

Published in:

Proteomics, 2007, v. 7, n. 22, p. 4036, doi. 10.1002/pmic.200600929

By:

Zhang, Jiyang;
Li, Jianqi;
Xie, Hongwei;
Zhu, Yunping;
He, Fuchu

Publication type:

Article

Protein probabilities in shotgun proteomics: Evaluating different estimation methods using a semi-random sampling model.

Published in:

Proteomics, 2006, v. 6, n. 23, p. 6134, doi. 10.1002/pmic.200600070

By:

Xue, Xiaofang;
Wu, Songfeng;
Wang, Zhongsheng;
Zhu, Yunping;
He, Fuchu

Publication type:

Article

Inflammation inhibitors were remarkably up-regulated in plasma of severe acute respiratory syndrome patients at progressive phase.

Published in:

Proteomics, 2006, v. 6, n. 9, p. 2886, doi. 10.1002/pmic.200500638

By:

Jia Wan;
Wei Sun;
Xiaohai Li;
Wantao Ying;
Jingquan Dai;
Xuezhang Kuai;
Handong Wei;
Xue Gao;
Yunping Zhu;
Ying Jiang;
Xiaohong Qian;
Fuchu He

Publication type:

Article

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large-scale organization and robustness.

Published in:

Proteomics, 2006, v. 6, n. 2, p. 456, doi. 10.1002/pmic.200500228

By:

Dong Li;
Jianqi Li;
Shuguang Ouyang;
Jian Wang;
Songfeng Wu;
Ping Wan;
Yunping Zhu;
Xiaojie Xu;
Fuchu He

Publication type:

Article

Multi-modality of pI distribution in whole proteome.

Published in:

Proteomics, 2006, v. 6, n. 2, p. 449, doi. 10.1002/pmic.200500221

By:

Songfeng Wu;
Ping Wan;
Jianqi Li;
Dong Li;
Yunping Zhu;
Fuchu He

Publication type:

Article

Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus.

Published in:

Proteomics, 2004, v. 4, n. 2, p. 492, doi. 10.1002/pmic.200300676

By:

Wantao Ying;
Yunwei Hao;
Yangjun Zhang;
Wenming Peng;
Ede Qin;
Yun Cai;
Kaihua Wei;
Jie Wang;
Guohui Chang;
Wei Sun;
Shujia Dai;
Xiaohai Li;
Yunping Zhu;
Jianqi Li;
Songfeng Wu;
Lihai Guo;
Jingquan Dai;
Jinglan Wang;
Ping Wan;
Tinggui Chen

Publication type:

Article

Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data.

Published in:

Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae316

By:

Liu, Xiaofan;
Tao, Yuhuan;
Cai, Zilin;
Bao, Pengfei;
Ma, Hongli;
Li, Kexing;
Li, Mengtao;
Zhu, Yunping;
Lu, Zhi John

Publication type:

Article

COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods.

Published in:

Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad708

By:

Wu, Xiaojing;
Han, Mingfei;
Song, Xinyu;
He, Song;
Bo, Xiaochen;
Zhu, Yunping

Publication type:

Article

SARS-CoV-2-infected hiPSC-derived cardiomyocytes reveal dynamic changes in the COVID-19 hearts.

Published in:

Stem Cell Research & Therapy, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13287-023-03603-1

By:

Li, Xiao;
Hu, Hengrui;
Liu, Wanlin;
Zhang, Qiyu;
Wang, Yujie;
Chen, Xingjuan;
Zhu, Yunping;
Hu, Zhihong;
Wang, Manli;
Ma, Jie;
Leng, Ling

Publication type:

Article

Enzyme-assisted extraction of astaxanthin from Haematococcus pluvialis and its stability and antioxidant activity.

Published in:

Food Science & Biotechnology, 2019, v. 28, n. 6, p. 1637, doi. 10.1007/s10068-019-00608-6

By:

Zhao, Xiaoyan;
Zhang, Xiaowei;
Liu, Hongkai;
Zhu, Haitao;
Zhu, Yunping

Publication type:

Article

The effects of biomacromolecules on the physical stability of W/O/W emulsions.

Published in:

Journal of Food Science & Technology, 2017, v. 54, n. 2, p. 469, doi. 10.1007/s13197-017-2488-9

By:

Li, Jinlong;
Zhu, Yunping;
Teng, Chao;
Xiong, Ke;
Yang, Ran;
Li, Xiuting

Publication type:

Article

Integrated analysis of circulating and tissue proteomes reveals that fibronectin 1 is a potential biomarker in papillary thyroid cancer.

Published in:

BMC Cancer, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12885-023-10839-w

By:

Ye, Guochao;
Zhang, Xiaomei;
Li, Mansheng;
Lin, Zixiang;
Xu, Yongcan;
Dong, Haoru;
Zhou, Jie;
Zhang, Jiaqi;
Wang, Sheng;
Zhu, Yunping;
Yu, Xiaobo;
Qian, Xu

Publication type:

Article

Effective Separation of Granaticins From Streptomyces Vilmorinianum YP1 Using High‐Speed Countercurrent Chromatography and Their Characteristic Evaluation.

Published in:

Journal of Separation Science, 2025, v. 48, n. 5, p. 1, doi. 10.1002/jssc.70184

By:

Si, Xuechen;
Li, Huilin;
Yang, Jiarong;
Zhu, Yunping;
Cao, Xueli

Publication type:

Article

Production of xylo-oligosaccharides using a Streptomyces rochei xylanase immobilized on Eudragit S-100.

Published in:

Biocatalysis & Biotransformation, 2021, v. 39, n. 6, p. 408, doi. 10.1080/10242422.2021.1964483

By:

Teng, Chao;
Tang, Huihua;
Li, Xiuting;
Zhu, Yunping;
Fan, Guangsen;
Yang, Ran

Publication type:

Article

Amino acid, structure and antioxidant properties of Haematococcus pluvialis protein hydrolysates produced by different proteases.

Published in:

International Journal of Food Science & Technology, 2021, v. 56, n. 1, p. 185, doi. 10.1111/ijfs.14618

By:

Zhu, Yunping;
Zhao, Xiaoyan;
Zhang, Xiaowei;
Liu, Hongkai;
Ao, Qiang

Publication type:

Article

Information engineering infrastructure for life sciences and its implementation in China.

Published in:

SCIENCE CHINA Life Sciences, 2013, v. 56, n. 3, p. 220, doi. 10.1007/s11427-013-4440-1

By:

Zhu, WeiMin;
Zhu, YunPing;
Yang, XiaoLing

Publication type:

Article

An overview of human protein databases and their application to functional proteomics in health and disease.

Published in:

SCIENCE CHINA Life Sciences, 2011, v. 54, n. 11, p. 988, doi. 10.1007/s11427-011-4247-x

By:

Zhang, YanQiong;
Zhu, YunPing;
He, FuChu

Publication type:

Article

The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07827-4

By:

Li, Mansheng;
He, Qiang;
Yang, Chunyuan;
Ma, Jie;
He, Fuchu;
Chen, Tao;
Zhu, Yunping

Publication type:

Article

Serum proteome profiling provides a deep understanding of the 'gut–liver axis' in relation to liver injury and regeneration.

Published in:

Acta Biochimica et Biophysica Sinica, 2021, v. 53, n. 3, p. 372, doi. 10.1093/abbs/gmab001

By:

Leng, Ling;
Ma, Jie;
Lv, Luye;
Gao, Dunqin;
Li, Mansheng;
Wang, Yujie;
Zhu, Yunping

Publication type:

Article

A Deep Learning‐Based Tumor Classifier Directly Using MS Raw Data.

Published in:

Proteomics, 2020, v. 20, n. 21/22, p. 1, doi. 10.1002/pmic.201900344

By:

Dong, Hao;
Liu, Yi;
Zeng, Wen‐Feng;
Shu, Kunxian;
Zhu, Yunping;
Chang, Cheng

Publication type:

Article

A Comprehensive Evaluation of MS/MS Spectrum Prediction Tools for Shotgun Proteomics.

Published in:

Proteomics, 2020, v. 20, n. 21/22, p. 1, doi. 10.1002/pmic.201900345

By:

Xu, Rui;
Sheng, Jie;
Bai, Mingze;
Shu, Kunxian;
Zhu, Yunping;
Chang, Cheng

Publication type:

Article

Front Cover: PPICurator: A Tool for Extracting Comprehensive Protein–Protein Interaction Information.

Published in:

Proteomics, 2019, v. 19, n. 4, p. N.PAG, doi. 10.1002/pmic.201970021

By:

Li, Mansheng;
He, Qiang;
Ma, Jie;
He, Fuchu;
Zhu, Yunping;
Chang, Cheng;
Chen, Tao

Publication type:

Article

PPICurator: A Tool for Extracting Comprehensive Protein–Protein Interaction Information.

Published in:

Proteomics, 2019, v. 19, n. 4, p. N.PAG, doi. 10.1002/pmic.201800291

By:

Li, Mansheng;
He, Qiang;
Ma, Jie;
He, Fuchu;
Zhu, Yunping;
Chang, Cheng;
Chen, Tao

Publication type:

Article

Qualitative and quantitative analysis of the adult Drosophila melanogaster proteome.

Published in:

Proteomics, 2014, v. 14, n. 2/3, p. 286, doi. 10.1002/pmic.201300121

By:

Xing, Xiaohua;
Zhang, Chengpu;
Li, Ning;
Zhai, Linhui;
Zhu, Yunping;
Yang, Xiaoming;
Xu, Ping

Publication type:

Article

Systematic research on the pretreatment of peptides for quantitative proteomics using a C<sub>18</sub> microcolumn.

Published in:

Proteomics, 2013, v. 13, n. 15, p. 2229, doi. 10.1002/pmic.201200591

By:

Zhai, Linhui;
Chang, Cheng;
Li, Ning;
Duong, Duc M.;
Chen, Hao;
Deng, Zixin;
Yang, Jian;
Hong, Xuechuan;
Zhu, Yunping;
Xu, Ping

Publication type:

Article

A new insight into the impact of different proteases on SILAC quantitative proteome of the mouse liver.

Published in:

Proteomics, 2013, v. 13, n. 15, p. 2238, doi. 10.1002/pmic.201200590

By:

Ma, Jie;
Li, Wenbo;
Lv, Yongzhuang;
Chang, Cheng;
Wu, Songfeng;
Song, Lei;
Ding, Chen;
Wei, Handong;
He, Fuchu;
Jiang, Ying;
Zhu, Yunping

Publication type:

Article

LFQuant: A label-free fast quantitative analysis tool for high-resolution LC- MS/ MS proteomics data.

Published in:

Proteomics, 2012, v. 12, n. 23/24, p. 3475, doi. 10.1002/pmic.201200017

By:

Zhang, Wei;
Zhang, Jiyang;
Xu, Changming;
Li, Ning;
Liu, Hui;
Ma, Jie;
Zhu, Yunping;
Xie, Hongwei

Publication type:

Article

Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric model.

Published in:

Proteomics, 2010, v. 10, n. 23, p. 4293, doi. 10.1002/pmic.200900668

By:

Ma, Jie;
Zhang, Jiyang;
Wu, Songfeng;
Li, Dong;
Zhu, Yunping;
He, Fuchu

Publication type:

Article

Research Progress of α-Glucosidase Inhibitors Produced by Microorganisms and Their Applications.

Published in:

Foods, 2023, v. 12, n. 18, p. 3344, doi. 10.3390/foods12183344

By:

Ren, Fei;
Ji, Nairu;
Zhu, Yunping

Publication type:

Article

MulNet: a scalable framework for reconstructing intra- and intercellular signaling networks from bulk and single-cell RNA-seq data.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf081

By:

Han, Mingfei;
Chen, Xiaoqing;
Li, Xiao;
Ma, Jie;
Chen, Tao;
Yang, Chunyuan;
Wang, Juan;
Li, Yingxing;
Guo, Wenting;
Zhu, Yunping

Publication type:

Article

LexA, an SOS response repressor, activates TGase synthesis in Streptomyces mobaraensis.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1397314

By:

Xinyu Shi;
Hao Yan;
Fang Yuan;
Guoying Li;
Jingfang Liu;
Chunli Li;
Xiaobin Yu;
Zilong Li;
Yunping Zhu;
Weishan Wang

Publication type:

Article

MoGCN: A Multi-Omics Integration Method Based on Graph Convolutional Network for Cancer Subtype Analysis.

Published in:

Frontiers in Genetics, 2022, v. 12, p. 1, doi. 10.3389/fgene.2022.806842

By:

Li, Xiao;
Ma, Jie;
Leng, Ling;
Han, Mingfei;
Li, Mansheng;
He, Fuchu;
Zhu, Yunping

Publication type:

Article

Spatially resolved proteomic map shows that extracellular matrix regulates epidermal growth.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31659-9

By:

Li, Jun;
Ma, Jie;
Zhang, Qiyu;
Gong, Huizi;
Gao, Dunqin;
Wang, Yujie;
Li, Biyou;
Li, Xiao;
Zheng, Heyi;
Wu, Zhihong;
Zhu, Yunping;
Leng, Ling

Publication type:

Article

Single‐cell profiling highlight pathogenic myeloid features in house dust mite‐induced murine model of airway inflammation.

Published in:

Allergy, 2025, v. 80, n. 5, p. 1478, doi. 10.1111/all.16156

By:

Liu, Jiachen;
Lv, Jiaoyan;
Chen, Sijie;
Ma, Jie;
Yao, Jiaying;
Yuan, Zan;
Yang, Chunyuan;
Li, Xiao;
Zhang, Xuegong;
Zhu, Yunping;
Zhang, Jianhong;
Wu, Li

Publication type:

Article

Effects of different molecular weight water-extractable arabinoxylans on the physicochemical properties and structure of wheat gluten.

Published in:

Journal of Food Science & Technology, 2019, v. 56, n. 1, p. 340, doi. 10.1007/s13197-018-3494-2

By:

Zhu, Yunping;
Li, Fang;
Wang, Yu;
Li, Jinlong;
Teng, Chao;
Wang, Changtao;
Li, Xiuting

Publication type:

Article

Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 133, doi. 10.1186/1471-2148-11-133

By:

Zhongyang Liu;
Qijun Liu;
Hanchang Sun;
Lin Hou;
Hao Guo;
Yunping Zhu;
Dong Li;
Fuchu He

Publication type:

Article

LiverWiki: a wiki-based database for human liver.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1852-0

By:

Tao Chen;
Mansheng Li;
Qiang He;
Lei Zou;
Youhuan Li;
Cheng Chang;
Dongyan Zhao;
Yunping Zhu

Publication type:

Article

The Analysis of the Glycosyltransferase Gene Function From a Novel Granaticin Producer, Streptomyces Vilmorinianum. YP1.

Published in:

Current Microbiology, 2023, v. 80, n. 4, p. 1, doi. 10.1007/s00284-023-03192-5

By:

Zheng, Shenglan;
Zhao, Hongling;
Yuan, Zuoyun;
Si, Xuechen;
Li, Zongxian;
Song, Jingyi;
Zhu, Yunping;
Wu, Hua

Publication type:

Article

Detecting cell types and densities in the tumor microenvironment improves prognostic risk assessment for breast cancer.

Published in:

Biomolecules & Biomedicine, 2025, v. 25, n. 1, p. 106, doi. 10.17305/bb.2024.10974

By:

Pu Liu;
Xueli Zhang;
Wenwen Wang;
Yunping Zhu;
Yongfang Xie;
Yanhong Tai;
Jie Ma

Publication type:

Article

SW-Tandem: a highly efficient tool for large-scale peptide identification with parallel spectrum dot product on Sunway TaihuLight.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3861, doi. 10.1093/bioinformatics/btz147

By:

Li, Chuang;
Li, Kenli;
Chen, Tao;
Zhu, Yunping;
He, Qiang

Publication type:

Article

KeggExp: a web server for visual integration of KEGG pathways and expression profile data.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1430, doi. 10.1093/bioinformatics/bty798

By:

Liu, Xian;
Han, Mingfei;
Zhao, Chen;
Chang, Cheng;
Zhu, Yunping;
Ge, Changhui;
Yin, Ronghua;
Zhan, Yiqun;
Li, Changyan;
Yu, Miao;
He, Fuchu;
Yang, Xiaoming

Publication type:

Article

PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis.

Published in:

Bioinformatics, 2019, v. 35, n. 5, p. 898, doi. 10.1093/bioinformatics/bty727

By:

Chang, Cheng;
Li, Mansheng;
Guo, Chaoping;
Ding, Yuqing;
Xu, Kaikun;
Han, Mingfei;
He, Fuchu;
Zhu, Yunping

Publication type:

Article