Works matching AU Zhu, Yitan

Results: 27

VISDA: an open-source caBIGTM analytical tool for data clustering and beyond.

Published in:

Bioinformatics, 2007, v. 23, n. 15, p. 2024, doi. 10.1093/bioinformatics/btm290

By:

Jiajing Wang;
Huai Li;
Yitan Zhu;
Malik Yousef;
Michael Nebozhyn;
Michael Showe;
Louise Showe;
Jianhua Xuan;
Robert Clarke;
Yue Wang

Publication type:

Article

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models.

Published in:

Genes, 2020, v. 11, n. 9, p. 1070, doi. 10.3390/genes11091070

By:

Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

Face Detection and Recognition using Colour Sequential Images.

Published in:

Journal of Research & Practice in Information Technology, 2006, v. 38, n. 2, p. 135

By:

Zhonglong Zheng;
Jie Yang;
Yitan Zhu

Publication type:

Article

Publisher Correction: Converting tabular data into images for deep learning with convolutional neural networks.

Published in:

2021

By:

Zhu, Yitan;
Brettin, Thomas;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Evrard, Yvonne A.;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Correction Notice

Using computer-extracted image phenotypes from tumors on breast magnetic resonance imaging to predict breast cancer pathologic stage.

Published in:

2016

By:

Burnside, Elizabeth S.;
Drukker, Karen;
Li, Hui;
Bonaccio, Ermelinda;
Zuley, Margarita;
Ganott, Marie;
Net, Jose M.;
Sutton, Elizabeth J.;
Brandt, Kathleen R.;
Whitman, Gary J.;
Conzen, Suzanne D.;
Lan, Li;
Ji, Yuan;
Zhu, Yitan;
Jaffe, Carl C.;
Huang, Erich P.;
Freymann, John B.;
Kirby, Justin S.;
Morris, Elizabeth A.;
Giger, Maryellen L.

Publication type:

journal article

Identifying small molecule regulators of the Proteostasis Network that enhance CFTR protein function.

Published in:

FASEB Journal, 2013, v. 27, p. lb125, doi. 10.1096/fasebj.27.1_supplement.lb125

By:

Drew, Lawrence;
Miller, John;
Hutt, Darren;
Dobbs, Wesley;
Cullen, Matthew;
Zhu, Yitan;
Wachi, Shinichiro;
Andersen, Jennifer;
Khanna, Shilpi;
Giuliano, Kenneth;
Ge, Hui;
Garza, Dan;
Balch, William;
Reinhart, Peter;
Tait, Bradley

Publication type:

Article

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data.

Published in:

JNCI: Journal of the National Cancer Institute, 2015, v. 107, n. 8, p. 1, doi. 10.1093/jnci/djv129

By:

Yitan Zhu;
Yanxun Xu;
Helseth Jr, Donald L.;
Gulukota, Kamalakar;
Shengjie Yang;
Pesce, Lorenzo L.;
Mitra, Riten;
Müller, Peter;
Sengupta, Subhajit;
Wentian Guo;
Silverstein, Jonathan C.;
Foster, Ian;
Parsad, Nigel;
White, Kevin P.;
Yuan Ji

Publication type:

Article

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data.

Published in:

JNCI: Journal of the National Cancer Institute, 2015, v. 107, n. 8, p. 1, doi. 10.1093/jnci/djv129

By:

Yitan Zhu;
Yanxun Xu;
Helseth Jr., Donald L.;
Gulukota, Kamalakar;
Shengjie Yang;
Pesce, Lorenzo L.;
Mitra, Riten;
Müller, Peter;
Sengupta, Subhajit;
Guo, Wentian;
Silverstein, Jonathan C.;
Foster, Ian;
Parsad, Nigel;
White, Kevin P.;
Yuan Ji

Publication type:

Article

Radiogenomics of breast cancer using dynamic contrast enhanced MRI and gene expression profiling.

Published in:

2019

By:

Yeh, Albert C.;
Li, Hui;
Zhu, Yitan;
Zhang, Jing;
Khramtsova, Galina;
Drukker, Karen;
Edwards, Alexandra;
McGregor, Stephanie;
Yoshimatsu, Toshio;
Zheng, Yonglan;
Niu, Qun;
Abe, Hiroyuki;
Mueller, Jeffrey;
Conzen, Suzanne;
Ji, Yuan;
Giger, Maryellen L.;
Olopade, Olufunmilayo I.

Publication type:

journal article

Convex Analysis of Mixtures for Separating Non-negative Well-grounded Sources.

Published in:

Scientific Reports, 2016, p. 38350, doi. 10.1038/srep38350

By:

Zhu, Yitan;
Wang, Niya;
Miller, David J.;
Wang, Yue

Publication type:

Article

Deciphering Genomic Underpinnings of Quantitative MRI-based Radiomic Phenotypes of Invasive Breast Carcinoma.

Published in:

Scientific Reports, 2015, p. 17787, doi. 10.1038/srep17787

By:

Zhu, Yitan;
Li, Hui;
Guo, Wentian;
Drukker, Karen;
Lan, Li;
Giger, Maryellen L.;
Ji, Yuan

Publication type:

Article

Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf134

By:

Narykov, Oleksandr;
Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A;
Partin, Alexander;
Xia, Fangfang;
Shukla, Maulik;
Vasanthakumari, Priyanka;
Doroshow, James H;
Stevens, Rick L

Publication type:

Article

Converting tabular data into images for deep learning with convolutional neural networks.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90923-y

By:

Zhu, Yitan;
Brettin, Thomas;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Evrard, Yvonne A.;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

Ensemble transfer learning for the prediction of anti-cancer drug response.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74921-0

By:

Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Partin, Alexander;
Xia, Fangfang;
Shukla, Maulik;
Yoo, Hyunseung;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening.

Published in:

Cancers, 2024, v. 16, n. 3, p. 530, doi. 10.3390/cancers16030530

By:

Vasanthakumari, Priyanka;
Zhu, Yitan;
Brettin, Thomas;
Partin, Alexander;
Shukla, Maulik;
Xia, Fangfang;
Narykov, Oleksandr;
Weil, Michael Ryan;
Stevens, Rick L.

Publication type:

Article

Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models.

Published in:

Cancers, 2024, v. 16, n. 1, p. 50, doi. 10.3390/cancers16010050

By:

Narykov, Oleksandr;
Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Partin, Alexander;
Shukla, Maulik;
Xia, Fangfang;
Clyde, Austin;
Vasanthakumari, Priyanka;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

A Bayesian hierarchical model for inference across related reverse phase protein arrays experiments.

Published in:

Journal of Applied Statistics, 2014, v. 41, n. 11, p. 2483, doi. 10.1080/02664763.2014.920776

By:

Mitra, Riten;
Müller, Peter;
Ji, Yuan;
Zhu, Yitan;
Mills, Gordon;
Lu, Yiling

Publication type:

Article

TCGA-Assembler: open-source software for retrieving and processing TCGA data.

Published in:

Nature Methods, 2014, v. 11, n. 6, p. 599, doi. 10.1038/nmeth.2956

By:

Zhu, Yitan;
Qiu, Peng;
Ji, Yuan

Publication type:

Article

A Nonparametric Bayesian Model for Local Clustering With Application to Proteomics.

Published in:

Journal of the American Statistical Association, 2013, v. 108, n. 503, p. 775, doi. 10.1080/01621459.2013.784705

By:

Lee, Juhee;
Müller, Peter;
Zhu, Yitan;
Ji, Yuan

Publication type:

Article

Prediction of clinical phenotypes in invasive breast carcinomas from the integration of radiomics and genomics data.

Published in:

Journal of Medical Imaging, 2015, v. 2, n. 4, p. 1, doi. 10.1117/1.JMI.2.4.041007

By:

Wentian Guo;
Hui Li;
Yitan Zhu;
Li Lan;
Shengjie Yang;
Drukker, Karen;
Morris, Elizabeth;
Burnside, Elizabeth;
Whitman, Gary;
Giger, Maryellen L.;
Yuan Ji

Publication type:

Article

Heterogeneous reciprocal graphical models.

Published in:

Biometrics, 2018, v. 74, n. 2, p. 606, doi. 10.1111/biom.12791

By:

Ni, Yang;
Müller, Peter;
Zhu, Yitan;
Ji, Yuan

Publication type:

Article

Clustering distributions with the marginalized nested Dirichlet process.

Published in:

Biometrics, 2018, v. 74, n. 2, p. 584, doi. 10.1111/biom.12778

By:

Zuanetti, Daiane Aparecida;
Müller, Peter;
Zhu, Yitan;
Yang, Shengjie;
Ji, Yuan

Publication type:

Article

caBIG VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-383

By:

Yitan Zhu;
Huai Li;
Miller, David J.;
Zuyi Wang;
Jianhua Xuan;
Clarke, Robert;
Hoffman, Eric P.;
Yue Wang

Publication type:

Article

TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.

Published in:

Bioinformatics, 2018, v. 34, n. 9, p. 1615, doi. 10.1093/bioinformatics/btx812

By:

Wei, Lin;
Jin, Zhilin;
Yang, Shengjie;
Xu, Yanxun;
Zhu, Yitan;
Ji, Yuan

Publication type:

Article

Scalable Bayesian Nonparametric Clustering and Classification.

Published in:

Journal of Computational & Graphical Statistics, 2020, v. 29, n. 1, p. 53, doi. 10.1080/10618600.2019.1624366

By:

Ni, Yang;
Müller, Peter;
Diesendruck, Maurice;
Williamson, Sinead;
Zhu, Yitan;
Ji, Yuan

Publication type:

Article

Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 3, p. 1, doi. 10.1093/nar/gkv953

By:

Sengupta, Subhajit;
Gulukota, Kamalakar;
Zhu, Yitan;
Ober, Carole;
Naughton, Katherine;
Wentworth-Sheilds, William;
Yuan Ji

Publication type:

Article

Learning curves for drug response prediction in cancer cell lines.

Published in:

BMC Bioinformatics, 2021, v. 22, p. 1, doi. 10.1186/s12859-021-04163-y

By:

Partin, Alexander;
Brettin, Thomas;
Evrard, Yvonne A.;
Zhu, Yitan;
Yoo, Hyunseung;
Xia, Fangfang;
Jiang, Songhao;
Clyde, Austin;
Shukla, Maulik;
Fonstein, Michael;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article