Works by Zhou, Ruhong

Results: 98

G protein subunit Gγ13-mediated signaling pathway is critical to the inflammation resolution and functional recovery of severely injured lungs.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.92956

By:

Yi-Hong Li;
Yi-Sen Yang;
Yan-Bo Xue;
Hao Lei;
Sai-Sai Zhang;
Junbin Qian;
Yushi Yao;
Ruhong Zhou;
Liquan Huang

Publication type:

Article

Bio-mimicking of Proline-Rich Motif Applied to Carbon Nanotube Reveals Unexpected Subtleties Underlying Nanoparticle Functionalization.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep07229

By:

Yuanzhao Zhang;
Camilo A. Jimenez-Cruz;
Jian Wang;
Zaixing Yang;
Ruhong Zhou;
Bo Zhou

Publication type:

Article

Structural and electronic properties of uranium-encapsulated AU14 cage.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05862

By:

Yang Gao;
Xing Dai;
Seung-gu Kang;
Jimenez-Cruz, Camilo Andres;
Minsi Xin;
Yan Meng;
Jie Han;
Zhigang Wang;
Ruhong Zhou

Publication type:

Article

Rotation Motion of Designed Nano-Turbine.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05846

By:

Jingyuan Li;
Xiaofeng Wang;
Lina Zhao;
Xingfa Gao;
Yuliang Zhao;
Ruhong Zhou

Publication type:

Article

Dual Inhibitory Pathways of Metallofullerenol Gd@C82(OH)22 on Matrix Metalloproteinase-2: Molecular insight into drug-like nanomedicine.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04775

By:

Seung-gu Kang;
Araya-Secchi, Raul;
Deqiang Wang;
Bo Wang;
Huynh, Tien;
Ruhong Zhou

Publication type:

Article

Tuft cells utilize taste signaling molecules to respond to the pathobiont microbe Ruminococcus gnavus in the proximal colon.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1259521

By:

Hao Lei;
Defu Yu;
Yan-Bo Xue;
Yi-Hong Li;
Shi-Meng Gong;
Yuan-Yuan Peng;
Kai-Fang Liu;
Buratto, Damiano;
Yisen Yang;
Sai-Sai Zhang;
Min Wu;
Ruhong Zhou;
Liquan Huang

Publication type:

Article

NF2 regulates IP3R‐mediated Ca2+ signal and apoptosis in meningiomas.

Published in:

FASEB Journal, 2024, v. 38, n. 13, p. 1, doi. 10.1096/fj.202400436R

By:

Lei, Zhaoying;
Niu, Jie;
Cai, Huajian;
Kong, Zhengyi;
Ding, Xue;
Dong, Yufei;
Zhang, Dong;
Li, Xu;
Shao, Jianzhong;
Lin, Aifu;
Zhou, Ruhong;
Yang, Shuxu;
Yan, Qingfeng

Publication type:

Article

Metallo‐Helicoid with Double Rims: Polymerization Followed by Folding by Intramolecular Coordination.

Published in:

Angewandte Chemie, 2021, v. 133, n. 3, p. 1301, doi. 10.1002/ange.202010696

By:

Yin, Guang‐Qiang;
Kandapal, Sneha;
Liu, Chung‐Hao;
Wang, Heng;
Huang, Jianxiang;
Jiang, Shu‐Ting;
Ji, Tan;
Yan, Yu;
Khalife, Sandra;
Zhou, Ruhong;
Ye, Libin;
Xu, Bingqian;
Yang, Hai‐Bo;
Nieh, Mu‐Ping;
Li, Xiaopeng

Publication type:

Article

Emergence of a Radical‐Stabilizing Metal–Organic Framework as a Radio‐photoluminescence Dosimeter.

Published in:

Angewandte Chemie, 2020, v. 132, n. 35, p. 15321, doi. 10.1002/ange.202006380

By:

Liu, Hanzhou;
Qin, Haoming;
Shen, Nannan;
Yan, Siqi;
Wang, Yaxing;
Yin, Xuemiao;
Chen, Xinjian;
Zhang, Chao;
Dai, Xing;
Zhou, Ruhong;
Ouyang, Xiaoping;
Chai, Zhifang;
Wang, Shuao

Publication type:

Article

Observation of a dewetting transition in the collapse of the melittin tetramer.

Published in:

2005

By:

Pu Liu;
Xuhui Huang;
Ruhong Zhou;
Berne, B. J.

Publication type:

Letter

Free energy landscape of protein folding in water: Explicit vs. implicit solvent.

Published in:

Proteins, 2003, v. 53, n. 2, p. 148, doi. 10.1002/prot.10483

By:

Ruhong Zhou

Publication type:

Article

Spatial profiling of protein hydrophobicity: Native vs. Decoy structures.

Published in:

Proteins, 2003, v. 52, n. 4, p. 561, doi. 10.1002/prot.10419

By:

Ruhong Zhou;
B. David Silverman;
Ajay K. Royyuru;
Prasanna Athma

Publication type:

Article

Distinct lipid membrane interaction and uptake of differentially charged nanoplastics in bacteria.

Published in:

Journal of Nanobiotechnology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12951-022-01321-z

By:

Dai, Shang;
Ye, Rui;
Huang, Jianxiang;
Wang, Binqiang;
Xie, Zhenming;
Ou, Xinwen;
Yu, Ning;
Huang, Cheng;
Hua, Yuejin;
Zhou, Ruhong;
Tian, Bing

Publication type:

Article

IsRNAcirc: 3D structure prediction of circular RNAs based on coarse-grained molecular dynamics simulation.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012293

By:

Jiang, Haolin;
Xu, Yulian;
Tong, Yunguang;
Zhang, Dong;
Zhou, Ruhong

Publication type:

Article

Selection of an HLA-C*03:04-Restricted HIV-1 p24 Gag Sequence Variant Is Associated with Viral Escape from KIR2DL3+ Natural Killer Cells: Data from an Observational Cohort in South Africa.

Published in:

2015

By:

Hölzemer, Angelique;
Thobakgale, Christina F.;
Cruz, Camilo A. Jimenez;
Garcia-Beltran, Wilfredo F.;
Carlson, Jonathan M.;
van Teijlingen, Nienke H.;
Mann, Jaclyn K.;
Jaggernath, Manjeetha;
Seung-gu Kang;
Körner, Christian;
Chung, Amy W.;
Schafer, Jamie L.;
Evans, David T.;
Alter, Galit;
Walker, Bruce D.;
Goulder, Philip J.;
Carrington, Mary;
Hartmann, Pia;
Pertel, Thomas;
Ruhong Zhou

Publication type:

journal article

PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory.

Published in:

Bioinformatics, 2007, v. 23, n. 1, p. 99, doi. 10.1093/bioinformatics/btl538

By:

Ruhong Zhou;
Laxmi Parida;
Kush Kapila;
Sudhir Mudur

Publication type:

Article

A pH‐responsive nanoparticle delivery system containing dihydralazine and doxorubicin‐based prodrug for enhancing antitumor efficacy.

Published in:

Aggregate, 2024, v. 5, n. 1, p. 1, doi. 10.1002/agt2.434

By:

Zhang, Lianxue;
Huang, Jianxiang;
Buratto, Damiano;
Han, Panli;
Yang, Zaixing;
Zhou, Ruhong

Publication type:

Article

Ultralong excimer phosphorescence by the self-assembly and confinement of terpyridine derivatives in polymeric matrices.

Published in:

Aggregate, 2023, v. 4, n. 4, p. 1, doi. 10.1002/agt2.344

By:

Guangqiang Yin;
Wei Lu;
Jianxiang Huang;
Rui Li;
Depeng Liu;
Longqiang Li;
Ruhong Zhou;
Guifei Huo;
Tao Chen

Publication type:

Article

Probing the electrostatic aggregation of nanoparticles with oppositely charged molecular ions.

Published in:

Aggregate, 2023, v. 4, n. 4, p. 1, doi. 10.1002/agt2.324

By:

Jianxiang Huang;
Damiano Buratto;
Ruhong Zhou

Publication type:

Article

Cytotoxicity of graphene: recent advances and future perspective.

Published in:

WIREs: Nanomedicine & Nanobiotechnology, 2014, v. 6, n. 5, p. 452, doi. 10.1002/wnan.1277

By:

Zhou, Ruhong;
Gao, Huajian

Publication type:

Article

Superior Compatibility of C2N with Human Red Blood Cell Membranes and the Underlying Mechanism.

Published in:

Small, 2018, v. 14, n. 52, p. N.PAG, doi. 10.1002/smll.201803509

By:

Liu, Lu;
Zhang, Shitong;
Zhao, Lin;
Gu, Zonglin;
Duan, Guangxin;
Zhou, Bo;
Yang, Zaixing;
Zhou, Ruhong

Publication type:

Article

Mild Binding of Protein to C2N Monolayer Reveals Its Suitable Biocompatibility.

Published in:

Small, 2017, v. 13, n. 12, p. n/a, doi. 10.1002/smll.201603685

By:

Li, Baoyu;
Li, Weifeng;
Perez‐Aguilar, Jose Manuel;
Zhou, Ruhong

Publication type:

Article

Graphene Oxide Nanosheets Retard Cellular Migration via Disruption of Actin Cytoskeleton.

Published in:

Small, 2017, v. 13, n. 3, p. n/a, doi. 10.1002/smll.201602133

By:

Tian, Xin;
Yang, Zaixing;
Duan, Guangxin;
Wu, Anqing;
Gu, Zonglin;
Zhang, Leili;
Chen, Chunying;
Chai, Zhifang;
Ge, Cuicui;
Zhou, Ruhong

Publication type:

Article

Linear interaction energy approximation for binding affinities of nevirapine and HEPT analogues with HIV-1 reverse transcriptase.

Published in:

Molecular Simulation, 2009, v. 35, n. 14/15, p. 1224, doi. 10.1080/08927020902929828

By:

Tavlarakis, Antonios;
Ruhong Zhou

Publication type:

Article

A combined steepest descent and genetic algorithm (SD/GA) approach for the optimization of solvation parameters.

Published in:

Molecular Simulation, 2006, v. 32, n. 6, p. 427, doi. 10.1080/08927020600812672

By:

Ting Liu;
Lei Ye;
Huajun Chen;
Jingyuan Li;
Zhaohui Wu;
Ruhong Zhou

Publication type:

Article

OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 6, p. 1, doi. 10.1093/bib/bbad365

By:

Xu, Gang;
Luo, Zhenwei;
Zhou, Ruhong;
Wang, Qinghua;
Ma, Jianpeng

Publication type:

Article

Multiscale modeling of macromolecular biosystems.

Published in:

Briefings in Bioinformatics, 2012, v. 13, n. 4, p. 395, doi. 10.1093/bib/bbr077

By:

Flores, Samuel C.;
Bernauer, Julie;
Shin, Seokmin;
Zhou, Ruhong;
Huang, Xuhui

Publication type:

Article

Insights on Weight Gain and MASLD Risk in Japanese Non‐Obese Individuals.

Published in:

Journal of Gastroenterology & Hepatology, 2025, v. 40, n. 5, p. 1326, doi. 10.1111/jgh.16951

By:

Li, Miya;
Zhang, Qinlin;
Zhou, Ruhong

Publication type:

Article

Molecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38573-8

By:

Li, Xiaolong;
Singh, Nishant Kumar;
Collins, David R.;
Ng, Robert;
Zhang, Angela;
Lamothe-Molina, Pedro A.;
Shahinian, Peter;
Xu, Shutong;
Tan, Kemin;
Piechocka-Trocha, Alicja;
Urbach, Jonathan M.;
Weber, Jeffrey K.;
Gaiha, Gaurav D.;
Takou Mbah, Overbeck Christian;
Huynh, Tien;
Cheever, Sophia;
Chen, James;
Birnbaum, Michael;
Zhou, Ruhong;
Walker, Bruce D.

Publication type:

Article

Conformational cycle of human polyamine transporter ATP13A2.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37741-0

By:

Mu, Jianqiang;
Xue, Chenyang;
Fu, Lei;
Yu, Zongjun;
Nie, Minhan;
Wu, Mengqi;
Chen, Xinmeng;
Liu, Kun;
Bu, Ruiqian;
Huang, Ying;
Yang, Baisheng;
Han, Jianming;
Jiang, Qianru;
Chan, Kevin C.;
Zhou, Ruhong;
Li, Huilin;
Huang, Ancheng;
Wang, Yong;
Liu, Zhongmin

Publication type:

Article

Inhibition of the proteasome activity by graphene oxide contributes to its cytotoxicity.

Published in:

Nanotoxicology, 2018, v. 12, n. 2, p. 185, doi. 10.1080/17435390.2018.1425503

By:

Ma, Xiaochuan;
Lee, Sangyun;
Fei, Xingshu;
Fang, Ge;
Huynh, Tien;
Chong, Yu;
Chai, Zhifang;
Ge, Cuicui;
Zhou, Ruhong

Publication type:

Article

Metallo‐Helicoid with Double Rims: Polymerization Followed by Folding by Intramolecular Coordination.

Published in:

Angewandte Chemie International Edition, 2021, v. 60, n. 3, p. 1281, doi. 10.1002/anie.202010696

By:

Yin, Guang‐Qiang;
Kandapal, Sneha;
Liu, Chung‐Hao;
Wang, Heng;
Huang, Jianxiang;
Jiang, Shu‐Ting;
Ji, Tan;
Yan, Yu;
Khalife, Sandra;
Zhou, Ruhong;
Ye, Libin;
Xu, Bingqian;
Yang, Hai‐Bo;
Nieh, Mu‐Ping;
Li, Xiaopeng

Publication type:

Article

Emergence of a Radical‐Stabilizing Metal–Organic Framework as a Radio‐photoluminescence Dosimeter.

Published in:

Angewandte Chemie International Edition, 2020, v. 59, n. 35, p. 15209, doi. 10.1002/anie.202006380

By:

Liu, Hanzhou;
Qin, Haoming;
Shen, Nannan;
Yan, Siqi;
Wang, Yaxing;
Yin, Xuemiao;
Chen, Xinjian;
Zhang, Chao;
Dai, Xing;
Zhou, Ruhong;
Ouyang, Xiaoping;
Chai, Zhifang;
Wang, Shuao

Publication type:

Article

Successful Decontamination of 99TcO4− in Groundwater at Legacy Nuclear Sites by a Cationic Metal‐Organic Framework with Hydrophobic Pockets.

Published in:

Angewandte Chemie International Edition, 2019, v. 58, n. 15, p. 4968, doi. 10.1002/anie.201814640

By:

Sheng, Daopeng;
Zhu, Lin;
Dai, Xing;
Xu, Chao;
Li, Peng;
Pearce, Carolyn I.;
Xiao, Chengliang;
Chen, Jing;
Zhou, Ruhong;
Duan, Tao;
Farha, Omar K.;
Chai, Zhifang;
Wang, Shuao

Publication type:

Article

Targeting cancer-associated fibroblast autophagy renders pancreatic cancer eradicable with immunochemotherapy by inhibiting adaptive immune resistance.

Published in:

Autophagy, 2024, v. 20, n. 6, p. 1314, doi. 10.1080/15548627.2023.2300913

By:

Zhang, Xiaozhen;
Lao, Mengyi;
Yang, Hanshen;
Sun, Kang;
Dong, Yunfei;
He, Lihong;
Jiang, Xinchi;
Wu, Honghui;
Jiang, Yangwei;
Li, Muchun;
Ying, Honggang;
Liu, Xinyuan;
Xu, Jian;
Chen, Yan;
Zhang, Hanjia;
Zhou, Ruhong;
Gao, Jianqing;
Bai, Xueli;
Liang, Tingbo

Publication type:

Article

β-strand interactions at the domain interface critical for the stability of human lens γD-crystallin.

Published in:

Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 1, p. 131, doi. 10.1002/pro.296

By:

Das, Payel;
King, Jonathan A.;
Zhou, Ruhong

Publication type:

Article

Biotransformation of rare earth oxide nanoparticles eliciting microbiota imbalance.

Published in:

Particle & Fibre Toxicology, 2021, v. 18, n. 1, p. 1, doi. 10.1186/s12989-021-00410-5

By:

Zheng, Huizhen;
Gu, Zonglin;
Pan, Yanxia;
Chen, Jie;
Xie, Qianqian;
Xu, Shujuan;
Gao, Meng;
Cai, Xiaoming;
Liu, Shengtang;
Wang, Weili;
Li, Wei;
Liu, Xi;
Yang, Zaixing;
Zhou, Ruhong;
Li, Ruibin

Publication type:

Article

Combinatorial Pattern Discovery Approach for the Folding Trajectory Analysis of a β-Hairpin.

Published in:

PLoS Computational Biology, 2005, v. 1, n. 1, p. 32, doi. 10.1371/journal.pcbi.0010008

By:

Parida, Laxmi;
Zhou, Ruhong;
Luhua Lai

Publication type:

Article

Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2309, doi. 10.1093/bioinformatics/btp423

By:

Zhen Xia;
Gulei Jin;
Jun Zhu;
Ruhong Zhou

Publication type:

Article

Potassium Ion Mediated Double‐Layered Upright Assembly of Negatively Charged Amyloid‐Like Peptides at Mica/Water Interface.

Published in:

Advanced Materials Interfaces, 2022, v. 9, n. 24, p. 1, doi. 10.1002/admi.202200402

By:

Li, Danni;
Huang, Jianxiang;
Lao, Yichong;
Zhang, Yiling;
Song, Wei;
Song, Jie;
Liu, Cong;
Dai, Bin;
Zhou, Ruhong

Publication type:

Article

The Deinococcus protease PprI senses DNA damage by directly interacting with singlestranded DNA.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46208-9

By:

Huizhi Lu;
Zijing Chen;
Teng Xie;
Shitong Zhong;
Shasha Suo;
Shuang Song;
Liangyan Wang;
Hong Xu;
Bing Tian;
Ye Zhao;
Ruhong Zhou;
Yuejin Hua

Publication type:

Article

C3N nanodots inhibits Aβ peptides aggregation pathogenic path in Alzheimer's disease.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41489-y

By:

Yin, Xiuhua;
Zhou, Hong;
Zhang, Mengling;
Su, Juan;
Wang, Xiao;
Li, Sijie;
Yang, Zaixing;
Kang, Zhenhui;
Zhou, Ruhong

Publication type:

Article

An inorganic mineral-based protocell with prebiotic radiation fitness.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43272-5

By:

Dai, Shang;
Xie, Zhenming;
Wang, Binqiang;
Ye, Rui;
Ou, Xinwen;
Wang, Chen;
Yu, Ning;
Huang, Cheng;
Zhao, Jie;
Cai, Chunhui;
Zhang, Furong;
Buratto, Damiano;
Khan, Taimoor;
Qiao, Yan;
Hua, Yuejin;
Zhou, Ruhong;
Tian, Bing

Publication type:

Article

Mutagenesis and structural studies reveal the basis for the specific binding of SARS-CoV-2 SL3 RNA element with human TIA1 protein.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39410-8

By:

Zhang, Dong;
Qiao, Lulu;
Lei, Xiaobo;
Dong, Xiaojing;
Tong, Yunguang;
Wang, Jianwei;
Wang, Zhiye;
Zhou, Ruhong

Publication type:

Article

Interactions Between Proteins and Carbon-Based Nanoparticles: Exploring the Origin of Nanotoxicity at the Molecular Level.

Published in:

Small, 2013, v. 9, n. 9/10, p. 1546, doi. 10.1002/smll.201201381

By:

Zuo, Guanghong;
Kang, Seung‐gu;
Xiu, Peng;
Zhao, Yuliang;
Zhou, Ruhong

Publication type:

Article

Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity.

Published in:

Journal of Computational Chemistry, 2009, v. 30, n. 11, p. 1654, doi. 10.1002/jcc.21274

By:

DAS, PAYEL;
LI, JINGYUAN;
ROYYURU, AJAY K.;
ZHOU, RUHONG

Publication type:

Article

A computationally inexpensive modification of the point dipole electrostatic polarization model for molecular simulations.

Published in:

Journal of Computational Chemistry, 2003, v. 24, n. 3, p. 267, doi. 10.1002/jcc.10170

By:

Kaminski, George A.;
Friesner, Richard A.;
Zhou, Ruhong

Publication type:

Article

Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests.

Published in:

Journal of Computational Chemistry, 2002, v. 23, n. 16, p. 1515, doi. 10.1002/jcc.10125

By:

Kaminski, George A.;
Stern, Harry A.;
Berne, B. J.;
Friesner, Richard A.;
Cao, Yixiang X.;
Murphy, Robert B.;
Zhou, Ruhong;
Halgren, Thomas A.

Publication type:

Article

Destructive extraction of phospholipids from Escherichia coli membranes by graphene nanosheets.

Published in:

Nature Nanotechnology, 2013, v. 8, n. 12, p. 968, doi. 10.1038/nnano.2013.275

By:

Tu, Yusong;
Lv, Min;
Xiu, Peng;
Huynh, Tien;
Zhang, Meng;
Castelli, Matteo;
Liu, Zengrong;
Huang, Qing;
Fan, Chunhai;
Fang, Haiping;
Zhou, Ruhong

Publication type:

Article

Destructive extraction of phospholipids from Escherichia coli membranes by graphene nanosheets.

Published in:

Nature Nanotechnology, 2013, v. 8, n. 8, p. 594, doi. 10.1038/nnano.2013.125

By:

Tu, Yusong;
Lv, Min;
Xiu, Peng;
Huynh, Tien;
Zhang, Meng;
Castelli, Matteo;
Liu, Zengrong;
Huang, Qing;
Fan, Chunhai;
Fang, Haiping;
Zhou, Ruhong

Publication type:

Article