Works by Zhernakova, Daria V

Results: 21

Systematic analysis of relationships between plasma branched-chain amino acid concentrations and cardiometabolic parameters: an association and Mendelian randomization study.

Published in:

BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02688-4

By:

Doestzada, Marwah;
Zhernakova, Daria V.;
C. L. van den Munckhof, Inge;
Wang, Daoming;
Kurilshikov, Alexander;
Chen, Lianmin;
Bloks, Vincent W.;
van Faassen, Martijn;
Rutten, Joost H. W.;
Joosten, Leo A. B.;
Netea, Mihai G.;
Wijmenga, Cisca;
Riksen, Niels P.;
Zhernakova, Alexandra;
Kuipers, Folkert;
Fu, Jingyuan

Publication type:

Article

Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1053-6

By:

Slieker, Roderick C.;
van Iterson, Maarten;
Luijk, René;
Beekman, Marian;
Zhernakova, Daria V.;
Moed, Matthijs H.;
Mei, Hailiang;
van Galen, Michiel;
Deelen, Patrick;
Jan Bonder, Marc;
Zhernakova, Alexandra;
Uitterlinden, André G.;
Tigchelaar, Ettje F.;
Stehouwer, Coen D. A.;
Schalkwijk, Casper G.;
van der Kallen, Carla J. H.;
Hofman, Albert;
van Heemst, Diana;
de Geus, Eco J.;
van Dongen, Jenny

Publication type:

Article

Blood lipids influence DNA methylation in circulating cells.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1000-6

By:

Dekkers, Koen F.;
van Iterson, Maarten;
Slieker, Roderick C.;
Moed, Matthijs H.;
Bonder, Marc Jan;
van Galen, Michiel;
Hailiang Mei;
Zhernakova, Daria V.;
van den Berg, Leonard H.;
Deelen, Joris;
van Dongen, Jenny;
van Heemst, Diana;
Hofman, Albert;
Hottenga, Jouke J.;
van der Kallen, Carla J. H.;
Schalkwijk, Casper G.;
Stehouwer, Coen D. A.;
Tigchelaar, Ettje F.;
Uitterlinden, André G.;
Willemsen, Gonneke

Publication type:

Article

The mixed liver and kidney transcriptome dataset of Darevskia valentini rock lizard.

Published in:

BMC Research Notes, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13104-022-06228-4

By:

Ryakhovsky, Sergei S.;
Zhernakova, Daria V.;
Korchagin, Vitaly I.;
Vergun, Andrey A.;
Girnyk, Anastasiya E.;
Dikaya, Victoria A.;
Arakelyan, Marine S.;
Komissarov, Aleksey S.;
Ryskov, Alexey P.

Publication type:

Article

A SNP panel for identification of DNA and RNA specimens.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4482-7

By:

Yousefi, Soheil;
Abbassi-Daloii, Tooba;
Kraaijenbrink, Thirsa;
Vermaat, Martijn;
Mei, Hailiang;
van 't Hof, Peter;
van Iterson, Maarten;
Zhernakova, Daria V.;
Claringbould, Annique;
Franke, Lude;
't Hart, Leen M.;
Slieker, Roderick C.;
van der Heijden, Amber;
de Knijff, Peter;
't Hoen, Peter A. C.

Publication type:

Article

Analytical “bake-off” of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0200423

By:

Zhernakova, Daria V.;
Kliver, Sergei;
Cherkasov, Nikolay;
Tamazian, Gaik;
Rotkevich, Mikhail;
Krasheninnikova, Ksenia;
Evsyukov, Igor;
Sidorov, Sviatoslav;
Dobrynin, Pavel;
Yurchenko, Andrey A.;
Shimansky, Valentin;
Shcherbakova, Irina V.;
Glotov, Andrey S.;
Valle, David L.;
Tang, Minzhong;
Shin, Emilia;
Schwarz, Kathleen B.;
O'Brien, Stephen J.

Publication type:

Article

Effect of Phenotype and Genotype on the Plasma Proteome in Patients with Inflammatory Bowel Disease.

Published in:

Journal of Crohn's & Colitis, 2022, v. 16, n. 3, p. 414, doi. 10.1093/ecco-jcc/jjab157

By:

Bourgonje, Arno R;
Hu, Shixian;
Spekhorst, Lieke M;
Zhernakova, Daria V;
Vila, Arnau Vich;
Li, Yanni;
Voskuil, Michiel D;
Berkel, Lisette A van;
Folly, Brenda Bley;
Charrout, Mohammed;
Mahfouz, Ahmed;
Reinders, Marcel J T;
Heck, Julia I P van;
Joosten, Leo A B;
Visschedijk, Marijn C;
Dullemen, Hendrik M van;
Faber, Klaas Nico;
Samsom, Janneke N;
Festen, Eleonora A M;
Dijkstra, Gerard

Publication type:

Article

Genetic, parental and lifestyle factors influence telomere length.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03521-7

By:

Andreu-Sánchez, Sergio;
Aubert, Geraldine;
Ripoll-Cladellas, Aida;
Henkelman, Sandra;
Zhernakova, Daria V.;
Sinha, Trishla;
Kurilshikov, Alexander;
Cenit, Maria Carmen;
Jan Bonder, Marc;
Franke, Lude;
Wijmenga, Cisca;
Fu, Jingyuan;
van der Wijst, Monique G. P.;
Melé, Marta;
Lansdorp, Peter;
Zhernakova, Alexandra

Publication type:

Article

New Gene Variants Associated with the Risk of Chronic HBV Infection.

Published in:

Virologica Sinica (16740769), 2020, v. 35, n. 4, p. 378, doi. 10.1007/s12250-020-00200-x

By:

Fan, Mengjie;
Wang, Jing;
Wang, Sa;
Li, Tengyan;
Pan, Hong;
Liu, Hankui;
Xu, Huifang;
Zhernakova, Daria V.;
O'Brien, Stephen J.;
Feng, Zhenru;
Chang, Le;
Dai, Erhei;
Lu, Jianhua;
Xi, Hongli;
Yu, Yanyan;
Zhang, Jianguo;
Wang, Binbin;
Zeng, Zheng

Publication type:

Article

Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi.

Published in:

Journal of Heredity, 2021, v. 112, n. 6, p. 540, doi. 10.1093/jhered/esab036

By:

Tamazian, Gaik;
Dobrynin, Pavel;
Zhuk, Anna;
Zhernakova, Daria V;
Perelman, Polina L;
Serdyukova, Natalia A;
Graphodatsky, Alexander S;
Komissarov, Aleksey;
Kliver, Sergei;
Cherkasov, Nikolay;
Scott, Alan F;
Mohr, David W;
Koepfli, Klaus-Peter;
O'Brien, Stephen J;
Krasheninnikova, Ksenia

Publication type:

Article

Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.

Published in:

Human Molecular Genetics, 2016, v. 25, n. 1, p. 180, doi. 10.1093/hmg/ddv455

By:

Gutierrez-Achury, Javier;
Zorro, Maria Magdalena;
Ricaño-Ponce, Isis;
Zhernakova, Daria V.;
Diogo, Dorothée;
Raychaudhuri, Soumya;
Franke, Lude;
Trynka, Gosia;
Wijmenga, Cisca;
Zhernakova, Alexandra

Publication type:

Article

Systematic annotation of celiac disease loci refines pathological pathways and suggests a genetic explanation for increased interferon-gamma levels.

Published in:

Human Molecular Genetics, 2015, v. 24, n. 2, p. 397, doi. 10.1093/hmg/ddu453

By:

Kumar, Vinod;
Gutierrez-Achury, Javier;
Kanduri, Kartiek;
Almeida, Rodrigo;
Hrdlickova, Barbara;
Zhernakova, Daria V.;
Westra, Harm-Jan;
Karjalainen, Juha;
Ricaño-Ponce, Isis;
Yang Li;
Stachurska, Anna;
Tigchelaar, Ettje F.;
Abdulahad, Wayel H.;
Lähdesmäki, Harri;
Hofker, Marten H.;
Zhernakova, Alexandra;
Franke, Lude;
Lahesmaa, Riitta;
Wijmenga, Cisca;
Withoff, Sebo

Publication type:

Article

DeepSAGE Reveals Genetic Variants Associated with Alternative Polyadenylation and Expression of Coding and Non-coding Transcripts.

Published in:

PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003594

By:

Zhernakova, Daria V.;
de Klerk, Eleonora;
Westra, Harm-Jan;
Mastrokolias, Anastasios;
Amini, Shoaib;
Ariyurek, Yavuz;
Jansen, Rick;
Penninx, Brenda W.;
Hottenga, Jouke J.;
Willemsen, Gonneke;
de Geus, Eco J.;
Boomsma, Dorret I.;
Veldink, Jan H.;
van den Berg, Leonard H.;
Wijmenga, Cisca;
den Dunnen, Johan T.;
van Ommen, Gert-Jan B.;
't Hoen, Peter A. C.;
Franke, Lude

Publication type:

Article

Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression.

Published in:

PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003201

By:

Kumar, Vinod;
Westra, Harm-Jan;
Karjalainen, Juha;
Zhernakova, Daria V.;
Esko, Tõnu;
Hrdlickova, Barbara;
Almeida, Rodrigo;
Zhernakova, Alexandra;
Reinmaa, Eva;
Võsa, Urmo;
Hofker, Marten H.;
Fehrmann, Rudolf S. N.;
Jingyuan Fu;
Withoff, Sebo;
Metspalu, Andres;
Franke, Lude;
Wijmenga, Cisca

Publication type:

Article

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.

Published in:

Genome Medicine, 2015, v. 7, p. 1, doi. 10.1186/s13073-015-0229-0

By:

Kogelman, Lisette J. A.;
Zhernakova, Daria V.;
Westra, Harm-Jan;
Cirera, Susanna;
Fredholm, Merete;
Franke, Lude;
Kadarmideen, Haja N.

Publication type:

Article

Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels.

Published in:

Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0152-4

By:

Deelen, Patrick;
Zhernakova, Daria V.;
de Haan, Mark;
van der Sijde, Marijke;
Bonder, Marc Jan;
Karjalainen, Juha;
van der Velde, K. Joeri;
Abbott, Kristin M.;
Jingyuan Fu;
Wijmenga, Cisca;
Sinke, Richard J.;
Swertz, Morris A.;
Franke, Lude

Publication type:

Article

Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity.

Published in:

Genome Medicine, 2014, v. 6, n. 10, p. 109, doi. 10.1186/s13073-014-0088-0

By:

Hrdlickova, Barbara;
Kumar, Vinod;
Kanduri, Kartiek;
Zhernakova, Daria V.;
Tripathi, Subhash;
Karjalainen, Juha;
Lund, Riikka J.;
Yang Li;
Ullah, Ubaid;
Modderman, Rutger;
Abdulahad, Wayel;
Lähdesmäki, Harri;
Franke, Lude;
Lahesmaa, Riitta;
Wijmenga, Cisca;
Withoff, Sebo

Publication type:

Article

Systematic identification of trans eQTLs as putative drivers of known disease associations.

Published in:

Nature Genetics, 2013, v. 45, n. 10, p. 1238, doi. 10.1038/ng.2756

By:

Westra, Harm-Jan;
Peters, Marjolein J;
Esko, Tõnu;
Yaghootkar, Hanieh;
Schurmann, Claudia;
Kettunen, Johannes;
Christiansen, Mark W;
Fairfax, Benjamin P;
Schramm, Katharina;
Powell, Joseph E;
Zhernakova, Alexandra;
Zhernakova, Daria V;
Veldink, Jan H;
Van den Berg, Leonard H;
Karjalainen, Juha;
Withoff, Sebo;
Uitterlinden, André G;
Hofman, Albert;
Rivadeneira, Fernando;
't Hoen, Peter A C

Publication type:

Article

First Genome of Rock Lizard Darevskia valentini Involved in Formation of Several Parthenogenetic Species.

Published in:

Genes, 2022, v. 13, n. 9, p. 1569, doi. 10.3390/genes13091569

By:

Ochkalova, Sofia;
Korchagin, Vitaly;
Vergun, Andrey;
Urin, Avel;
Zilov, Danil;
Ryakhovsky, Sergei;
Girnyk, Anastasiya;
Martirosyan, Irena;
Zhernakova, Daria V.;
Arakelyan, Marine;
Danielyan, Felix;
Kliver, Sergei;
Brukhin, Vladimir;
Komissarov, Aleksey;
Ryskov, Alexey

Publication type:

Article

Epigenome-wide association study on the plasma metabolome suggests self-regulation of the glycine and serine pathway through DNA methylation.

Published in:

Clinical Epigenetics, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13148-024-01718-7

By:

Wu, Jiafei;
Palasantzas, Victoria;
Andreu-Sánchez, Sergio;
Plösch, Torsten;
Leonard, Sam;
Li, Shuang;
Bonder, Marc Jan;
Westra, Harm-Jan;
van Meurs, Joyce;
Ghanbari, Mohsen;
Franke, Lude;
Zhernakova, Alexandra;
Fu, Jingyuan;
Hoogerland, Joanne A.;
Zhernakova, Daria V.

Publication type:

Article

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model.

Published in:

BMC Medical Genomics, 2014, v. 7, p. 1

By:

Kogelman, Lisette J. A.;
Cirera, Susanna;
Zhernakova, Daria V.;
Fredholm, Merete;
Franke, Lude;
Kadarmideen, Haja N.

Publication type:

Article