Works by Zhavoronkov, Alex

Results: 76
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    Cover Image.

    Published in:
    Prenatal Diagnosis, 2021, v. 41, n. 3, p. i, doi. 10.1002/pd.5922
    By:
    • Ma, Mary‐Jane L.;
    • Yakovenko, Sergey;
    • Zhang, Haiqiang;
    • Cheng, Suk Hang;
    • Apryshko, Valentina;
    • Zhavoronkov, Alex;
    • Jiang, Peiyong;
    • Chan, K. C. Allen;
    • Chiu, Rossa W. K.;
    • Lo, Y. M. Dennis
    Publication type:
    Article
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    Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer.

    Published in:
    NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00606-w
    By:
    • Cyberski, Thomas F.;
    • Singh, Alka;
    • Korzinkin, Michael;
    • Mishra, Vasudha;
    • Pun, Frank;
    • Shen, Le;
    • Wing, Claudia;
    • Cheng, Xiangying;
    • Baird, Brandon;
    • Miao, Yuxuan;
    • Elkabets, Moshe;
    • Kochanny, Sara;
    • Guo, Wenji;
    • Dyer, Emma;
    • Pearson, Alexander T.;
    • Juloori, Aditya;
    • Lingen, Mark;
    • Cole, Grayson;
    • Zhavoronkov, Alex;
    • Agrawal, Nishant
    Publication type:
    Article
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    Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models.

    Published in:
    Frontiers in Pharmacology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphar.2020.565644
    By:
    • Polykovskiy, Daniil;
    • Zhebrak, Alexander;
    • Sanchez-Lengeling, Benjamin;
    • Golovanov, Sergey;
    • Tatanov, Oktai;
    • Belyaev, Stanislav;
    • Kurbanov, Rauf;
    • Artamonov, Aleksey;
    • Aladinskiy, Vladimir;
    • Veselov, Mark;
    • Kadurin, Artur;
    • Johansson, Simon;
    • Chen, Hongming;
    • Nikolenko, Sergey;
    • Aspuru-Guzik, Alán;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    A comprehensive AI‐driven analysis of large‐scale omic datasets reveals novel dual‐purpose targets for the treatment of cancer and aging.

    Published in:
    Aging Cell, 2023, v. 22, n. 12, p. 1, doi. 10.1111/acel.14017
    By:
    • Pun, Frank W.;
    • Leung, Geoffrey Ho Duen;
    • Leung, Hoi Wing;
    • Rice, Jared;
    • Schmauck‐Medina, Tomas;
    • Lautrup, Sofie;
    • Long, Xi;
    • Liu, Bonnie Hei Man;
    • Wong, Chun Wai;
    • Ozerov, Ivan V.;
    • Aliper, Alex;
    • Ren, Feng;
    • Rosenberg, Ari J.;
    • Agrawal, Nishant;
    • Izumchenko, Evgeny;
    • Fang, Evandro F.;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    Bifunctional immune checkpoint-targeted antibody-ligand traps that simultaneously disable TGFβ enhance the efficacy of cancer immunotherapy.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02696-6
    By:
    • Ravi, Rajani;
    • Noonan, Kimberly A.;
    • Vui Pham;
    • Bedi, Rishi;
    • Zhavoronkov, Alex;
    • Ozerov, Ivan V.;
    • Makarev, Eugene;
    • Artemov, Artem V.;
    • Wysocki, Piotr T.;
    • Mehra, Ranee;
    • Nimmagadda, Sridhar;
    • Marchionni, Luigi;
    • Sidransky, David;
    • Borrello, Ivan M.;
    • Izumchenko, Evgeny;
    • Bedi, Atul
    Publication type:
    Article
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    GULP1 regulates the NRF2-KEAP1 signaling axis in urothelial carcinoma.

    Published in:
    Science Signaling, 2020, v. 13, n. 645, p. 1, doi. 10.1126/scisignal.aba0443
    By:
    • Hayashi, Masamichi;
    • Guida, Elisa;
    • Inokawa, Yoshikuni;
    • Goldberg, Rachel;
    • Reis, Leonardo O.;
    • Ooki, Akira;
    • Pilli, Manohar;
    • Sadhukhan, Pritam;
    • Woo, Juhyung;
    • Choi, Woonyoung;
    • Izumchenko, Evgeny;
    • Gonzalez, Leonel Maldonado;
    • Marchionni, Luigi;
    • Zhavoronkov, Alex;
    • Brait, Mariana;
    • Bivalacqua, Trinity;
    • Baras, Alexander;
    • Netto, George J.;
    • Koch, Wayne;
    • Singh, Anju
    Publication type:
    Article
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    Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data.

    Published in:
    Cell Cycle, 2017, v. 16, n. 19, p. 1810, doi. 10.1080/15384101.2017.1361068
    By:
    • Borisov, Nicolas;
    • Suntsova, Maria;
    • Sorokin, Maxim;
    • Garazha, Andrew;
    • Kovalchuk, Olga;
    • Aliper, Alexander;
    • Ilnitskaya, Elena;
    • Lezhnina, Ksenia;
    • Korzinkin, Mikhail;
    • Tkachev, Victor;
    • Saenko, Vyacheslav;
    • Saenko, Yury;
    • Sokov, Dmitry G.;
    • Gaifullin, Nurshat M.;
    • Kashintsev, Kirill;
    • Shirokorad, Valery;
    • Shabalina, Irina;
    • Zhavoronkov, Alex;
    • Mishra, Bhubaneswar;
    • Cantor, Charles R.
    Publication type:
    Article
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    An analysis of gene expression data involving examination of signaling pathways activation reveals new insights into the mechanism of action of minoxidil topical foam in men with androgenetic alopecia.

    Published in:
    Cell Cycle, 2017, v. 16, n. 17, p. 1578, doi. 10.1080/15384101.2017.1327492
    By:
    • Stamatas, Georgios N.;
    • Wu, Jeff;
    • Pappas, Apostolos;
    • Mirmirani, Paradi;
    • McCormick, Thomas S.;
    • Cooper, Kevin D.;
    • Consolo, Mary;
    • Schastnaya, Jane;
    • Ozerov, Ivan V.;
    • Aliper, Alexander;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    Common pathway signature in lung and liver fibrosis.

    Published in:
    Cell Cycle, 2016, v. 15, n. 13, p. 1667, doi. 10.1080/15384101.2016.1152435
    By:
    • Makarev, Eugene;
    • Izumchenko, Evgeny;
    • Aihara, Fumiaki;
    • Wysocki, Piotr T.;
    • Zhu, Qingsong;
    • Buzdin, Anton;
    • Sidransky, David;
    • Zhavoronkov, Alex;
    • Atala, Anthony
    Publication type:
    Article
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    MiRImpact, a new bioinformatic method using complete microRNA expression profiles to assess their overall influence on the activity of intracellular molecular pathways.

    Published in:
    Cell Cycle, 2016, v. 15, n. 5, p. 689, doi. 10.1080/15384101.2016.1147633
    By:
    • Artcibasova, Alina V.;
    • Korzinkin, Mikhail B.;
    • Sorokin, Maksim I.;
    • Shegay, Peter V.;
    • Zhavoronkov, Alex A.;
    • Gaifullin, Nurshat;
    • Alekseev, Boris Y.;
    • Vorobyev, Nikolay V.;
    • Kuzmin, Denis V.;
    • Kaprin, Аndrey D.;
    • Borisov, Nikolay M.;
    • Buzdin, Anton A.
    Publication type:
    Article
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    Genetics and epigenetics of aging and longevity.

    Published in:
    Cell Cycle, 2014, v. 13, n. 7, p. 1063, doi. 10.4161/cc.28433
    By:
    • Moskalev, Alexey A.;
    • Aliper, Alexander M.;
    • Smit-McBride, Zeljka;
    • Buzdin, Anton;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    A role for G-CSF and GM-CSF in nonmyeloid cancers.

    Published in:
    Cancer Medicine, 2014, v. 3, n. 4, p. 737, doi. 10.1002/cam4.239
    By:
    • Aliper, Alexander M.;
    • Frieden ‐ Korovkina, Victoria P.;
    • Buzdin, Anton;
    • Roumiantsev, Sergey A.;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    Innovations in aging biology: highlights from the ARDD emerging science & technologies workshop.

    Published in:
    NPJ Aging, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41514-025-00193-5
    By:
    • Unfried, Maximilian;
    • Schmauck-Medina, Tomas;
    • Amin, Neal D.;
    • Boyden, Edward S.;
    • Fuellen, Georg;
    • Han, Jing-Dong Jackie;
    • Hanna, Jacob H.;
    • Heckenbach, Indra;
    • Khodosevich, Konstantin;
    • Melton, Lisa;
    • Moeendarbary, Emad;
    • Moon, Tae Seok;
    • Peleg, Shahaf;
    • Sandberg, Anders;
    • Shi, Lingyan;
    • Bakula, Daniela;
    • Zhavoronkov, Alex;
    • Scheibye-Knudsen, Morten
    Publication type:
    Article
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    Precious2GPT: the combination of multiomics pretrained transformer and conditional diffusion for artificial multi-omics multi-species multi-tissue sample generation.

    Published in:
    NPJ Aging, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41514-024-00163-3
    By:
    • Sidorenko, Denis;
    • Pushkov, Stefan;
    • Sakip, Akhmed;
    • Leung, Geoffrey Ho Duen;
    • Lok, Sarah Wing Yan;
    • Urban, Anatoly;
    • Zagirova, Diana;
    • Veviorskiy, Alexander;
    • Tihonova, Nina;
    • Kalashnikov, Aleksandr;
    • Kozlova, Ekaterina;
    • Naumov, Vladimir;
    • Pun, Frank W.;
    • Aliper, Alex;
    • Ren, Feng;
    • Zhavoronkov, Alex
    Publication type:
    Article
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    Identification of Novel Antibacterials Using Machine Learning Techniques.

    Published in:
    Frontiers in Pharmacology, 2019, p. 1, doi. 10.3389/fphar.2019.00913
    By:
    • Ivanenkov, Yan A.;
    • Zhavoronkov, Alex;
    • Yamidanov, Renat S.;
    • Osterman, Ilya A.;
    • Sergiev, Petr V.;
    • Aladinskiy, Vladimir A.;
    • Aladinskaya, Anastasia V.;
    • Terentiev, Victor A.;
    • Veselov, Mark S.;
    • Ayginin, Andrey A.;
    • Kartsev, Victor G.;
    • Skvortsov, Dmitry A.;
    • Chemeris, Alexey V.;
    • Baimiev, Alexey Kh.;
    • Sofronova, Alina A.;
    • Malyshev, Alexander S.;
    • Filkov, Gleb I.;
    • Bezrukov, Dmitry S.;
    • Zagribelnyy, Bogdan A.;
    • Putin, Evgeny O.
    Publication type:
    Article
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    In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development.

    Published in:
    Nature Communications, 2016, v. 7, n. 11, p. 13427, doi. 10.1038/ncomms13427
    By:
    • Ozerov, Ivan V.;
    • Lezhnina, Ksenia V.;
    • Izumchenko, Evgeny;
    • Artemov, Artem V.;
    • Medintsev, Sergey;
    • Vanhaelen, Quentin;
    • Aliper, Alexander;
    • Vijg, Jan;
    • Osipov, Andreyan N.;
    • Labat, Ivan;
    • West, Michael D.;
    • Buzdin, Anton;
    • Cantor, Charles R.;
    • Nikolsky, Yuri;
    • Borisov, Nikolay;
    • Irincheeva, Irina;
    • Khokhlovich, Edward;
    • Sidransky, David;
    • Camargo, Miguel Luiz;
    • Zhavoronkov, Alex
    Publication type:
    Article