Works by Zhao, YunJie

Results: 59

RNA-protein interaction prediction using network-guided deep learning.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07694-9

By:

Liu, Haoquan;
Jian, Yiren;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Health Assessment for Mountainous Rivers Based on Dominant Functions in the Huaijiu River, Beijing, China.

Published in:

Environmental Management, 2022, v. 70, n. 1, p. 164, doi. 10.1007/s00267-022-01620-z

By:

Kong, Qingxian;
Xin, Zhongbao;
Zhao, Yunjie;
Ran, Lishan;
Xia, Xiaoping

Publication type:

Article

HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules.

Published in:

Pharmaceuticals (14248247), 2024, v. 17, n. 1, p. 33, doi. 10.3390/ph17010033

By:

Khatkar, Pooja;
Mensah, Gifty;
Ning, Shangbo;
Cowen, Maria;
Kim, Yuriy;
Williams, Anastasia;
Abulwerdi, Fardokht A.;
Zhao, Yunjie;
Zeng, Chen;
Le Grice, Stuart F. J.;
Kashanchi, Fatah

Publication type:

Article

Study on the Spatial Structure and Drivers of Agricultural Carbon Emission Efficiency in Belt and Road Initiative Countries.

Published in:

Sustainability (2071-1050), 2023, v. 15, n. 13, p. 10720, doi. 10.3390/su151310720

By:

Shu, Qin;
Su, Yang;
Li, Hong;
Li, Feng;
Zhao, Yunjie;
Du, Chen

Publication type:

Article

Design of Tat-Activated Cdk9 Inhibitor.

Published in:

International Journal of Peptide Research & Therapeutics, 2019, v. 25, n. 2, p. 807, doi. 10.1007/s10989-018-9730-9

By:

Zhao, Yunjie;
Chen, Hao;
Du, Chenghang;
Jian, Yiren;
Li, Haotian;
Xiao, Yi;
Saifuddin, Mohammed;
Kashanchi, Fatah;
Zeng, Chen

Publication type:

Article

RPocket: an intuitive database of RNA pocket topology information with RNA-ligand data resources.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04349-4

By:

Zhou, Ting;
Wang, Huiwen;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Study on propagation efficiency and fidelity of subthreshold signal in feed-forward hybrid neural network under electromagnetic radiation.

Published in:

Nonlinear Dynamics, 2021, v. 103, n. 3, p. 2627, doi. 10.1007/s11071-021-06247-z

By:

Wang, Guowei;
Ge, Mengyan;
Lu, Lulu;
Jia, Ya;
Zhao, Yunjie

Publication type:

Article

Propagation characteristics of weak signal in feedforward Izhikevich neural networks.

Published in:

Nonlinear Dynamics, 2020, v. 99, n. 3, p. 2355, doi. 10.1007/s11071-019-05392-w

By:

Ge, Mengyan;
Jia, Ya;
Lu, Lulu;
Xu, Ying;
Wang, Huiwen;
Zhao, Yunjie

Publication type:

Article

Spiking activities in chain neural network driven by channel noise with field coupling.

Published in:

Nonlinear Dynamics, 2019, v. 95, n. 4, p. 3237, doi. 10.1007/s11071-018-04752-2

By:

Xu, Ying;
Jia, Ya;
Wang, Huiwen;
Liu, Ying;
Wang, Ping;
Zhao, Yunjie

Publication type:

Article

Advances and Mechanisms of RNA–Ligand Interaction Predictions.

Published in:

2025

By:

Zhuo, Chen;
Zeng, Chengwei;
Liu, Haoquan;
Wang, Huiwen;
Peng, Yunhui;
Zhao, Yunjie

Publication type:

Literature Review

Methods and Applications in Proteins and RNAs.

Published in:

2023

By:

Liu, Haoquan;
Gong, Zhou;
Zhao, Yunjie

Publication type:

Editorial

Effects of Lycium barbarum Polysaccharides on Health and Aging of C. elegans Depend on daf-12/daf-16.

Published in:

Oxidative Medicine & Cellular Longevity, 2019, p. 1, doi. 10.1155/2019/6379493

By:

Zhang, Zhaokang;
Zhou, Yannan;
Fan, Haitao;
Billy, Kirunda John;
Zhao, Yunjie;
Zhan, Xuan;
Yang, Lijian;
Jia, Ya

Publication type:

Article

Large-scale study of long non-coding RNA functions based on structure and expression features.

Published in:

SCIENCE CHINA Life Sciences, 2013, v. 56, n. 10, p. 953, doi. 10.1007/s11427-013-4556-3

By:

Zhao, Yi;
Wang, Jian;
Chen, XiaoWei;
Luo, HaiTao;
Zhao, YunJie;
Xiao, Yi;
Chen, RenSheng

Publication type:

Article

Inhibition of JNK Phosphorylation by Curcumin Analog C66 Protects LPS-Induced Acute Lung Injury [Corrigendum].

Published in:

Drug Design, Development & Therapy, 2022, v. 16, p. 249, doi. 10.2147/DDDT.S357280

By:

Xiao, Zhongxiang;
Xu, Fengli;
Zhu, Xiaona;
Bai, Bin;
Guo, Lu;
Liang, Guang;
Shan, Xiaoou;
Zhang, Yali;
Zhao, Yunjie;
Zhang, Bing

Publication type:

Article

Inhibition Of JNK Phosphorylation By Curcumin Analog C66 Protects LPS-Induced Acute Lung Injury.

Published in:

Drug Design, Development & Therapy, 2019, v. 13, p. 4161, doi. 10.2147/DDDT.S215712

By:

Xiao, Zhongxiang;
Xu, Fengli;
Zhu, Xiaona;
Bai, Bin;
Guo, Lu;
Liang, Guang;
Shan, Xiaoou;
Zhang, Yali;
Zhao, Yunjie;
Zhang, Bing

Publication type:

Article

Design, synthesis, and structure-activity relationships of 2-benzylidene-1-indanone derivatives as anti-inflammatory agents for treatment of acute lung injury.

Published in:

Drug Design, Development & Therapy, 2018, v. 12, p. 887, doi. 10.2147/DDDT.S160314

By:

Xiao, Siyang;
Zhang, Wenxin;
Chen, Hongjin;
Fang, Bo;
Qiu, Yinda;
Chen, Xianxin;
Chen, Lingfeng;
Shu, Shen;
Zhang, Yali;
Zhao, Yunjie;
Liu, Zhiguo;
Liang, Guang

Publication type:

Article

Inhibition of MAPK-mediated ACE expression by compound C66 prevents STZ-induced diabetic nephropathy.

Published in:

Journal of Cellular & Molecular Medicine, 2014, v. 18, n. 2, p. 231, doi. 10.1111/jcmm.12175

By:

Pan, Yong;
Huang, Yi;
Wang, Zhe;
Fang, Qilu;
Sun, Yusheng;
Tong, Chao;
Peng, Kesong;
Wang, Yangwei;
Miao, Lining;
Cai, Lu;
Zhao, Yunjie;
Liang, Guang

Publication type:

Article

RPflex: A Coarse-Grained Network Model for RNA Pocket Flexibility Study.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 5497, doi. 10.3390/ijms24065497

By:

Zhuo, Chen;
Zeng, Chengwei;
Yang, Rui;
Liu, Haoquan;
Zhao, Yunjie

Publication type:

Article

RPpocket: An RNA–Protein Intuitive Database with RNA Pocket Topology Resources.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 13, p. 6903, doi. 10.3390/ijms23136903

By:

Yang, Rui;
Liu, Haoquan;
Yang, Liu;
Zhou, Ting;
Li, Xinyao;
Zhao, Yunjie

Publication type:

Article

HKPocket: human kinase pocket database for drug design.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3254-y

By:

Wang, Huiwen;
Qiu, Jiadi;
Liu, Haoquan;
Xu, Ying;
Jia, Ya;
Zhao, Yunjie

Publication type:

Article

DIRECT: RNA contact predictions by integrating structural patterns.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3099-4

By:

Jian, Yiren;
Wang, Xiaonan;
Qiu, Jaidi;
Wang, Huiwen;
Liu, Zhichao;
Zhao, Yunjie;
Zeng, Chen

Publication type:

Article

cyy-287, a novel pyrimidine-2,4-diamine derivative, inhibits tumor growth of EGFR-driven non-small cell lung cancer via the ERK pathway.

Published in:

Acta Biochimica et Biophysica Sinica, 2022, v. 54, n. 10, p. 1540, doi. 10.3724/abbs.2022139

By:

Qianwen Zhang;
Huijing Huang;
Shuwen Zheng;
Yelin Tang;
Xiaodan Zhang;
Qianqian Zhu;
Zefeng Ni;
Xiaohui Zheng;
Kun Wang;
Lehao Huang;
Yunjie Zhao;
Zhiguo Liu;
Jianchang Qian

Publication type:

Article

Integrated Traffic-Driving-Networking Simulator for the Design of Connected Vehicle Applications: Eco-Signal Case Study.

Published in:

Journal of Intelligent Transportation Systems, 2016, v. 20, n. 1, p. 75, doi. 10.1080/15472450.2014.889920

By:

Zhao, Yunjie;
Wagh, Aditya;
Hou, Yunfei;
Hulme, Kevin;
Qiao, Chunming;
Sadek, Adel W.

Publication type:

Article

Integrated modeling of protein and RNA.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae139

By:

Liu, Haoquan;
Zhao, Yunjie

Publication type:

Article

Deciphering principles of nucleosome interactions and impact of cancer-associated mutations from comprehensive interaction network analysis.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbad532

By:

Xu, Wang;
Zhang, Houfang;
Guo, Wenhan;
Jiang, Lijun;
Zhao, Yunjie;
Peng, Yunhui

Publication type:

Article

RNet: a network strategy to predict RNA binding preferences.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1093/bib/bbad482

By:

Liu, Haoquan;
Jian, Yiren;
Hou, Jinxuan;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Prediction of allosteric druggable pockets of cyclin-dependent kinases.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac290

By:

Ning, Shangbo;
Wang, Huiwen;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Semantic Segmentation Network for Unstructured Rural Roads Based on Improved SPPM and Fused Multiscale Features.

Published in:

Applied Sciences (2076-3417), 2024, v. 14, n. 19, p. 8739, doi. 10.3390/app14198739

By:

Cao, Xinyu;
Tian, Yongqiang;
Yao, Zhixin;
Zhao, Yunjie;
Zhang, Taihong

Publication type:

Article

Evaluating native-like structures of RNA-protein complexes through the deep learning method.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36720-9

By:

Zeng, Chengwei;
Jian, Yiren;
Vosoughi, Soroush;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Kaempferol attenuates hyperglycemia-induced cardiac injuries by inhibiting inflammatory responses and oxidative stress.

Published in:

Endocrine (1355008X), 2018, v. 60, n. 1, p. 83, doi. 10.1007/s12020-018-1525-4

By:

Chen, Xuemei;
Qian, Jianchang;
Wang, Lintao;
Li, Jieli;
Zhao, Yunjie;
Han, Jibo;
Khan, Zia;
Chen, Xiaojun;
Wang, Jingying;
Liang, Guang

Publication type:

Article

RBind: computational network method to predict RNA binding sites.

Published in:

Bioinformatics, 2018, v. 34, n. 18, p. 3131, doi. 10.1093/bioinformatics/bty345

By:

Wang, Kaili;
Jian, Yiren;
Wang, Huiwen;
Zeng, Chen;
Zhao, Yunjie

Publication type:

Article

Advances and Challenges in Scoring Functions for RNA–Protein Complex Structure Prediction.

Published in:

Biomolecules (2218-273X), 2024, v. 14, n. 10, p. 1245, doi. 10.3390/biom14101245

By:

Zeng, Chengwei;
Zhuo, Chen;
Gao, Jiaming;
Liu, Haoquan;
Zhao, Yunjie

Publication type:

Article

Design, Synthesis, and Structure-Activity Relationship Analysis of Thiazolo[3,2- a]pyrimidine Derivatives with Anti-inflammatory Activity in Acute Lung Injury.

Published in:

ChemMedChem, 2017, v. 12, n. 13, p. 1022, doi. 10.1002/cmdc.201700175

By:

Chen, Lingfeng;
Jin, Yiyi;
Fu, Weitao;
Xiao, Siyang;
Feng, Chen;
Fang, Bo;
Gu, Yugui;
Li, Chenglong;
Zhao, Yunjie;
Liu, Zhiguo;
Liang, Guang

Publication type:

Article

Cover Picture: Design, Synthesis, and Structure-Activity Relationship Analysis of Thiazolo[3,2- a]pyrimidine Derivatives with Anti-inflammatory Activity in Acute Lung Injury (ChemMedChem 13/2017).

Published in:

ChemMedChem, 2017, v. 12, n. 13, p. 1013, doi. 10.1002/cmdc.201700367

By:

Chen, Lingfeng;
Jin, Yiyi;
Fu, Weitao;
Xiao, Siyang;
Feng, Chen;
Fang, Bo;
Gu, Yugui;
Li, Chenglong;
Zhao, Yunjie;
Liu, Zhiguo;
Liang, Guang

Publication type:

Article

Keypoint Detection and 3D Localization Method for Ridge-Cultivated Strawberry Harvesting Robots.

Published in:

Agriculture; Basel, 2025, v. 15, n. 4, p. 372, doi. 10.3390/agriculture15040372

By:

Dai, Shuo;
Bai, Tao;
Zhao, Yunjie

Publication type:

Article

Recognition Method of Cabbage Heads at Harvest Stage under Complex Background Based on Improved YOLOv8n.

Published in:

Agriculture; Basel, 2024, v. 14, n. 7, p. 1125, doi. 10.3390/agriculture14071125

By:

Tian, Yongqiang;
Zhao, Chunjiang;
Zhang, Taihong;
Wu, Huarui;
Zhao, Yunjie

Publication type:

Article

Targeting extracellular matrix through phytochemicals: a promising approach of multi-step actions on the treatment and prevention of cancer.

Published in:

Frontiers in Pharmacology, 2023, p. 1, doi. 10.3389/fphar.2023.1186712

By:

Dan Liang;
Lu Liu;
Yunjie Zhao;
Zhenyi Luo;
Yadi He;
Yanping Li;
Shiyun Tang;
Jianyuan Tang;
Nianzhi Chen

Publication type:

Article

Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 11, p. 6299, doi. 10.1093/nar/gkx386

By:

Jian Wang;
Kangkun Mao;
Yunjie Zhao;
Chen Zeng;
Jianjin Xiang;
Yi Zhang;
Yi Xiao

Publication type:

Article

3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 10, p. 1, doi. 10.1093/nar/gkv141

By:

Jian Wang;
Yunjie Zhao;
Chunyan Zhu;
Yi Xiao

Publication type:

Article

Performance of protein-ligand docking with CDK4/6 inhibitors: a case study.

Published in:

Mathematical Biosciences & Engineering, 2021, v. 18, n. 1, p. 456, doi. 10.3934/mbe.2021025

By:

Linlu Song;
Shangbo Ning;
Jinxuan Hou;
Yunjie Zhao

Publication type:

Article

Inhibition of JNK Phosphorylation by a Novel Curcumin Analog Prevents High Glucose-Induced Inflammation and Apoptosis in Cardiomyocytes and the Development of Diabetic Cardiomyopathy.

Published in:

2014

By:

Pan, Yong;
Wang, Yi;
Zhao, Yunjie;
Peng, Kesong;
Li, Weixin;
Wang, Yonggang;
Zhang, Jingjing;
Zhou, Shanshan;
Liu, Quan;
Li, Xiaokun;
Cai, Lu;
Liang, Guang

Publication type:

Journal Article

Inhibition of JNK Phosphorylation by a Novel Curcumin Analog Prevents High Glucose--Induced Inflammation and Apoptosis in Cardiomyocytes and the Development of Diabetic Cardiomyopathy.

Published in:

Diabetes, 2014, v. 63, n. 10, p. 3497, doi. 10.2337/db13-1577

By:

Yong Pan;
Yi Wang;
Yunjie Zhao;
Kesong Peng;
Weixin Li;
Yonggang Wang;
Jingjing Zhang;
Shanshan Zhou;
Quan Liu;
Xiaokun Li;
Lu Cai;
Guang Liang

Publication type:

Article

Structural Characterization of Dendrobium officinale Polysaccharides and Their Regulation Effect on Intestinal Microbiota During In Vitro Fermentation.

Published in:

Polymers (20734360), 2025, v. 17, n. 6, p. 727, doi. 10.3390/polym17060727

By:

Yu, Yanlei;
Wang, Honggang;
Jin, Xiaoshu;
Huang, Wenjing;
Zhao, Yunjie;
Wang, Ningning;
Lu, Dongze;
Wei, Bin;
Wang, Hong

Publication type:

Article

Molecular Dynamics Simulation Reveals Insights into the Mechanism of Unfolding by the A130T/V Mutations within the MID1 Zinc-Binding Bbox1 Domain.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0124377

By:

Zhao, Yunjie;
Zeng, Chen;
Massiah, Michael A.

Publication type:

Article

Break CDK2/Cyclin E1 Interface Allosterically with Small Peptides.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109154

By:

Chen, Hao;
Zhao, Yunjie;
Li, Haotian;
Zhang, Dongyan;
Huang, Yanzhao;
Shen, Qi;
Van Duyne, Rachel;
Kashanchi, Fatah;
Zeng, Chen;
Liu, Shiyong

Publication type:

Article

Insights into Ligand Binding to PreQ<sub>1</sub> Riboswitch Aptamer from Molecular Dynamics Simulations.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092247

By:

Gong, Zhou;
Zhao, Yunjie;
Chen, Changjun;
Duan, Yong;
Xiao, Yi

Publication type:

Article

Targeting JNK by a New Curcumin Analog to Inhibit NF-kB-Mediated Expression of Cell Adhesion Molecules Attenuates Renal Macrophage Infiltration and Injury in Diabetic Mice.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079084

By:

Pan, Yong;
Zhang, Xiuhua;
Wang, Yi;
Cai, Lu;
Ren, Luqing;
Tang, Longguang;
Wang, Jingying;
Zhao, Yunjie;
Wang, Yonggang;
Liu, Quan;
Li, Xiaokun;
Liang, Guang

Publication type:

Article

Computational Study of Unfolding and Regulation Mechanism of preQ<sub>1</sub> Riboswitches.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045239

By:

Zhou Gong;
Yunjie Zhao;
Changjun Chen;
Yi Xiao;
Uversky, Vladimir N.

Publication type:

Article

Potent inhibition of gastric cancer cells by a natural compound via inhibiting TrxR1 activity and activating ROS-mediated p38 MAPK pathway.

Published in:

Free Radical Research, 2019, v. 53, n. 1, p. 104, doi. 10.1080/10715762.2018.1558448

By:

He, Wei;
Cao, Peihai;
Xia, Yiqun;
Hong, Lin;
Zhang, Tingting;
Shen, Xin;
Zheng, Peisen;
Shen, Huanpei;
Zhao, Yunjie;
Zou, Peng

Publication type:

Article

Insights into Temperature and Hypoxia Tolerance in Cowpea Weevil via HIF-1.

Published in:

Pathogens, 2021, v. 10, n. 6, p. 704, doi. 10.3390/pathogens10060704

By:

Liu, Qin;
Liu, Zhichao;
Gao, Zhipeng;
Chen, Guanjun;
Liu, Changyan;
Wan, Zhenghuang;
Chen, Chanyou;
Zeng, Chen;
Zhao, Yunjie;
Pan, Lei

Publication type:

Article