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Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing.
- Published in:
- Advanced Science, 2024, v. 11, n. 13, p. 1, doi. 10.1002/advs.202305818
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- Publication type:
- Article
Long‐Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage‐Encoded Methyltransferases.
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- Advanced Science, 2023, v. 10, n. 25, p. 1, doi. 10.1002/advs.202302159
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- Publication type:
- Article
metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02810-y
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- Publication type:
- Article
Involvement of Reactive Oxygen Species in the Hepatorenal Toxicity of Actinomycin V In Vitro and In Vivo.
- Published in:
- Marine Drugs, 2020, v. 18, n. 8, p. 428, doi. 10.3390/md18080428
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- Publication type:
- Article
Unnatural Direct Interspecies Electron Transfer Enabled by Living Cell‐Cell Click Chemistry.
- Published in:
- Angewandte Chemie, 2024, v. 136, n. 29, p. 1, doi. 10.1002/ange.202402318
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- Publication type:
- Article
Guest Editorial.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 105, doi. 10.1049/iet-syb.2015.0057
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- Publication type:
- Article
Understanding the aristolochic acid toxicities in rat kidneys with regulatory networks.
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- IET Systems Biology (Wiley-Blackwell), 2015, v. 9, n. 4, p. 141, doi. 10.1049/iet-syb.2014.0057
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- Publication type:
- Article
Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana.
- Published in:
- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0106-3
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- Publication type:
- Article
A Survey on the Computational Approaches to Identify Drug Targets in the Postgenomic Era.
- Published in:
- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/239654
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- Publication type:
- Article
STAB2: an updated spatio-temporal cell atlas of the human and mouse brain.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D1033, doi. 10.1093/nar/gkad955
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- Publication type:
- Article
Engineering of cytosine base editors with DNA damage minimization and editing scope diversification.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 20, p. e105, doi. 10.1093/nar/gkad855
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- Publication type:
- Article
mBodyMap: a curated database for microbes across human body and their associations with health and diseases.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D808, doi. 10.1093/nar/gkab973
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- Publication type:
- Article
GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D777, doi. 10.1093/nar/gkab1019
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- Publication type:
- Article
GMrepo: a database of curated and consistently annotated human gut metagenomes.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D545, doi. 10.1093/nar/gkz764
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- Publication type:
- Article
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D693, doi. 10.1093/nar/gky999
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- Publication type:
- Article
MVP: a microbe--phage interaction database.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D700, doi. 10.1093/nar/gkx1124
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- Article
Identifying disease genes and module biomarkers by differential interactions.
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- 2012
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- Publication type:
- journal article
TadA orthologs enable both cytosine and adenine editing of base editors.
- Published in:
- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36003-3
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- Publication type:
- Article
TadA reprogramming to generate potent miniature base editors with high precision.
- Published in:
- Nature Communications, 2023, p. 1, doi. 10.1038/s41467-023-36004-2
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- Publication type:
- Article
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29843-y
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- Publication type:
- Article
Host DNA contents in fecal metagenomics as a biomarker for intestinal diseases and effective treatment.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6749-z
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- Publication type:
- Article
Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs
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- PLoS Computational Biology, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003073
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- Publication type:
- Article
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
- Published in:
- Bioinformatics, 2023, v. 39, p. i21, doi. 10.1093/bioinformatics/btad209
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- Publication type:
- Article
PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein–protein interaction information.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4668, doi. 10.1093/bioinformatics/btab551
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- Publication type:
- Article
MAT2: manifold alignment of single-cell transcriptomes with cell triplets.
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- Bioinformatics, 2021, v. 37, n. 19, p. 3263, doi. 10.1093/bioinformatics/btab250
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- Publication type:
- Article
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
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- Bioinformatics, 2020, v. 36, n. 10, p. 3131, doi. 10.1093/bioinformatics/btaa108
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- Publication type:
- Article
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
- Published in:
- Bioinformatics, 2019, v. 35, n. 22, p. 4827, doi. 10.1093/bioinformatics/btz435
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- Publication type:
- Article
DeepPhos: prediction of protein phosphorylation sites with deep learning.
- Published in:
- Bioinformatics, 2019, v. 35, n. 16, p. 2766, doi. 10.1093/bioinformatics/bty1051
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- Publication type:
- Article
jNMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data.
- Published in:
- Bioinformatics, 2015, v. 31, n. 4, p. 572, doi. 10.1093/bioinformatics/btu679
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- Publication type:
- Article
Enterotypes of the human gut mycobiome.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01586-y
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- Publication type:
- Article
Common and disorder-specific cortical thickness alterations in internalizing, externalizing and thought disorders during early adolescence: an Adolescent Brain and Cognitive Development study.
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- Journal of Psychiatry & Neuroscience, 2023, v. 48, n. 5, p. E345, doi. 10.1503/jpn.220202
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- Publication type:
- Article
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
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- Bioinformatics, 2014, v. 30, n. 1, p. 71, doi. 10.1093/bioinformatics/btt603
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- Publication type:
- Article
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
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- Bioinformatics, 2013, v. 29, n. 1, p. 106, doi. 10.1093/bioinformatics/bts619
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- Publication type:
- Article
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
- Published in:
- Bioinformatics, 2012, v. 28, n. 1, p. 98, doi. 10.1093/bioinformatics/btr626
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- Publication type:
- Article
Docking sites inside Cas9 for adenine base editing diversification and RNA off-target elimination.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19730-9
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- Publication type:
- Article
Unnatural Direct Interspecies Electron Transfer Enabled by Living Cell‐Cell Click Chemistry.
- Published in:
- Angewandte Chemie International Edition, 2024, v. 63, n. 29, p. 1, doi. 10.1002/anie.202402318
- By:
- Publication type:
- Article
A discriminative approach for identifying domain-domain interactions from protein-protein interactions.
- Published in:
- Proteins, 2010, v. 78, n. 5, p. 1243, doi. 10.1002/prot.22643
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- Publication type:
- Article
Protein domain annotation with integration of heterogeneous information sources.
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- Proteins, 2008, v. 72, n. 1, p. 461, doi. 10.1002/prot.21943
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- Publication type:
- Article
Protein classification with imbalanced data.
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- Proteins, 2008, v. 70, n. 4, p. 1125, doi. 10.1002/prot.21870
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- Publication type:
- Article
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset.
- Published in:
- PLoS Genetics, 2023, v. 19, n. 12, p. 1, doi. 10.1371/journal.pgen.1011112
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- Publication type:
- Article
A global overview of genetically interpretable multimorbidities among common diseases in the UK Biobank.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00927-6
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- Publication type:
- Article
Prediction of <i>S</i>-Glutathionylation Sites Based on Protein Sequences.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055512
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- Publication type:
- Article
Rational design of graphene biohydrogel as a modular platform for highly efficient starch‐to‐bioelectricity.
- Published in:
- AIChE Journal, 2024, v. 70, n. 9, p. 1, doi. 10.1002/aic.18507
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- Publication type:
- Article
Cellular transcriptional alterations of peripheral blood in Alzheimer's disease.
- Published in:
- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02472-4
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- Publication type:
- Article
Nanoengineering of CoFe-LDH@Ni(OH)<sub>2</sub> for supercapacitor and water splitting applications.
- Published in:
- Journal of Materials Science, 2024, v. 59, n. 31, p. 14295, doi. 10.1007/s10853-024-10077-w
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- Publication type:
- Article
Editorial - Data mining in bioinformatics.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 6, p. 1, doi. 10.1142/S0219720015020047
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- Publication type:
- Article
ADVANCES IN GENOME INFORMATICS.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2010, v. 8, p. v, doi. 10.1142/S0219720010005294
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- Publication type:
- Article
AUTOMATIC MODELING OF SIGNALING PATHWAYS BY NETWORK FLOW MODEL.
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- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 2, p. 309, doi. 10.1142/S0219720009004138
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- Publication type:
- Article
Identification of Functional Gene Modules Associated With STAT-Mediated Antiviral Responses to White Spot Syndrome Virus in Shrimp.
- Published in:
- Frontiers in Physiology, 2019, p. N.PAG, doi. 10.3389/fphys.2019.00212
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- Publication type:
- Article
ANALYSIS OF GENE EXPRESSION DATA USING RPEM ALGORITHM IN NORMAL MIXTURE MODEL WITH DYNAMIC ADJUSTMENT OF LEARNING RATE.
- Published in:
- International Journal of Pattern Recognition & Artificial Intelligence, 2010, v. 24, n. 4, p. 651, doi. 10.1142/S0218001410008056
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- Publication type:
- Article