Works matching AU Zhang, Ziding
Results: 77
Cofitness network connectivity determines a fuzzy essential zone in open bacterial pangenome.
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- mLife, 2024, v. 3, n. 2, p. 277, doi. 10.1002/mlf2.12132
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- Article
Genomic differences of patients with hematologic malignancies in different age groups.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07293-0
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- Article
Network Analysis Reveals a Common Host-Pathogen Interaction Pattern in Arabidopsis Immune Responses.
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- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.00893
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- Article
Outer membrane proteins can be simply identified using secondary structure element alignment.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 76, doi. 10.1186/1471-2105-12-76
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Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-101
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Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii.
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- PLoS Genetics, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pgen.1007428
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Characterization of Calcium-Dependent Protein Kinase 2A, a Potential Drug Target Against Cryptosporidiosis.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.883674
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Deep Learning-Powered Prediction of Human-Virus Protein-Protein Interactions.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.842976
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- Article
Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens.
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- Plant Molecular Biology, 2017, v. 94, n. 4-5, p. 453, doi. 10.1007/s11103-017-0617-5
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AraPPISite: a database of fine-grained protein-protein interaction site annotations for Arabidopsis thaliana.
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- Plant Molecular Biology, 2016, v. 92, n. 1-2, p. 105, doi. 10.1007/s11103-016-0498-z
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- Article
Transfer learning via multi-scale convolutional neural layers for human–virus protein–protein interaction prediction.
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- Bioinformatics, 2021, v. 37, n. 24, p. 4771, doi. 10.1093/bioinformatics/btab533
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Deep learning‐assisted prediction of protein–protein interactions in Arabidopsis thaliana.
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- Plant Journal, 2023, v. 114, n. 4, p. 984, doi. 10.1111/tpj.16188
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- Article
The hybrid protein interactome contributes to rice heterosis as epistatic effects.
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- Plant Journal, 2020, v. 102, n. 1, p. 116, doi. 10.1111/tpj.14616
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- Article
Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26272-1
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- Article
Toxicity of Ionic Liquids.
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- CLEAN: Soil, Air, Water, 2007, v. 35, n. 1, p. 42, doi. 10.1002/clen.200600015
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- Article
Comparative Characterization of CpCDPK1 and CpCDPK9, Two Potential Drug Targets against Cryptosporidiosis.
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- Microorganisms, 2022, v. 10, n. 2, p. N.PAG, doi. 10.3390/microorganisms10020333
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- Article
Comparative Study of Two Insulinlike Proteases in Cryptosporidium parvum.
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- Microorganisms, 2021, v. 9, n. 4, p. 861, doi. 10.3390/microorganisms9040861
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- Article
Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features.
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- Scientific Reports, 2014, v. 4, n. 1, p. 1, doi. 10.1038/srep05765
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- Article
Transcriptional Landscapes of Long Non-coding RNAs and Alternative Splicing in Pyricularia oryzae Revealed by RNA-Seq.
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- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.723636
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- Article
Computational Identification of Protein Pupylation Sites by Using Profile-Based Composition of k-Spaced Amino Acid Pairs.
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- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129635
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- Article
Characterization of the MHC class II α-chain gene in ducks.
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- Immunogenetics, 2011, v. 63, n. 10, p. 667, doi. 10.1007/s00251-011-0545-5
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Multi-modal features-based human-herpesvirus protein–protein interaction prediction by using LightGBM.
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- Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbae005
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- Article
SGPPI: structure-aware prediction of protein–protein interactions in rigorous conditions with graph convolutional network.
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- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad020
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Current status and future perspectives of computational studies on human–virus protein–protein interactions.
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- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab029
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- Article
HVIDB: a comprehensive database for human–virus protein–protein interactions.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 832, doi. 10.1093/bib/bbaa425
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- Article
Prediction of protein–protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).
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- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 448, doi. 10.1093/bib/bbx132
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Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods.
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- Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 274, doi. 10.1093/bib/bbx123
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Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features.
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- Briefings in Bioinformatics, 2015, v. 16, n. 4, p. 640, doi. 10.1093/bib/bbu031
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Deciphering the Arabidopsis Floral Transition Process by Integrating a Protein-Protein Interaction Network and Gene Expression Data.
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- Plant Physiology, 2010, v. 153, n. 4, p. 1492
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- Article
Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae.
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- PLoS Genetics, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pgen.1002869
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The Bifidobacterium dentium Bd1 Genome Sequence Reflects Its Genetic Adaptation to the Human Oral Cavity.
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- PLoS Genetics, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pgen.1000785
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Computational Studies of Ligand-Receptor Interactions in Bitter Taste Receptors.
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- Journal of Receptors & Signal Transduction, 2006, v. 26, n. 5/6, p. 611, doi. 10.1080/10799890600928210
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MDP25, A Novel Calcium Regulatory Protein, Mediates Hypocotyl Cell Elongation by Destabilizing Cortical Microtubules in Arabidopsis.
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- Plant Cell, 2011, v. 23, n. 12, p. 4411, doi. 10.1105/tpc.111.092684
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- Article
Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection.
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- Scientific Reports, 2016, p. 35064, doi. 10.1038/srep35064
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Crysalis: an integrated server for computational analysis and design of protein crystallization.
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- Scientific Reports, 2016, p. 21383, doi. 10.1038/srep21383
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Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections.
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- Scientific Reports, 2016, p. 19149, doi. 10.1038/srep19149
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Competition-cooperation relationship networks characterize the competition and cooperation between proteins.
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- Scientific Reports, 2015, p. 11619, doi. 10.1038/srep11619
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Prp19‐associated splicing factor Cwf15 regulates fungal virulence and development in the rice blast fungus.
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- Environmental Microbiology, 2021, v. 23, n. 10, p. 5901, doi. 10.1111/1462-2920.15616
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Phosphatidic acid–regulated SOS2 controls sodium and potassium homeostasis in Arabidopsis under salt stress.
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- EMBO Journal, 2023, v. 42, n. 8, p. 1, doi. 10.15252/embj.2022112401
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- Article
ASTool: An Easy-to-Use Tool to Accurately Identify Alternative Splicing Events from Plant RNA-Seq Data.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 8, p. 4079, doi. 10.3390/ijms23084079
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- Article
The AtMAP65-1 Cross-Bridge Between Microtubules is Formed by One Dimer.
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- Plant & Cell Physiology, 2007, v. 48, n. 6, p. 866, doi. 10.1093/pcp/pcm059
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- Article
MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav108
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BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav064
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- Article
Analytic Approaches in Genomic Epidemiological Studies of Parasitic Protozoa.
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- Transboundary & Emerging Diseases, 2024, v. 2024, p. 1, doi. 10.1155/2024/7679727
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Similarity networks of protein binding sites.
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- Proteins, 2006, v. 62, n. 2, p. 470, doi. 10.1002/prot.20752
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Network-based analysis of virulence factors for uncovering Aeromonas veronii pathogenesis.
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- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02261-8
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- Article
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference.
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- Molecular Biology & Evolution, 2022, v. 39, n. 7, p. 1, doi. 10.1093/molbev/msac150
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- Article
Characterization of Three Calcium-Dependent Protein Kinases of Cryptosporidium parvum.
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- Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.622203
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- Article
Characterization of Calcium-Dependent Protein Kinases 3, a Protein Involved in Growth of Cryptosporidium parvum.
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- Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00907
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- Article
Rhizobial migration toward roots mediated by FadL-ExoFQP modulation of extracellular long-chain AHLs.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 3, p. 417, doi. 10.1038/s41396-023-01357-5
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