Works by Zhang, Xuekui

Results: 29

On logistic Box–Cox regression for flexibly estimating the shape and strength of exposure‐disease relationships.

Published in:

Canadian Journal of Statistics, 2021, v. 49, n. 3, p. 808, doi. 10.1002/cjs.11587

By:

Xing, Li;
Zhang, Xuekui;
Burstyn, Igor;
Gustafson, Paul

Publication type:

Article

Application of Group Sequential Methods to the 2-in-1 Design and Its Extensions for Interim Monitoring.

Published in:

Statistics in Biopharmaceutical Research, 2024, v. 16, n. 1, p. 130, doi. 10.1080/19466315.2023.2197402

By:

Zhang, Xuekui;
Jia, Haijun;
Xing, Li;
Chen, Cong

Publication type:

Article

High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 10, p. 854, doi. 10.1038/nsmb.2881

By:

Kuang, Zheng;
Cai, Ling;
Zhang, Xuekui;
Ji, Hongkai;
Tu, Benjamin P;
Boeke, Jef D

Publication type:

Article

The optimal design of clinical trials with potential biomarker effects: A novel computational approach.

Published in:

Statistics in Medicine, 2021, v. 40, n. 7, p. 1752, doi. 10.1002/sim.8868

By:

Lu, Yitao;
Zhou, Julie;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

A Semi-parametric Estimation of Personalized Dose-response Function Using Instrumental Variables.

Published in:

Journal of Machine Learning Research, 2024, v. 25, p. 1

By:

Wei Luo;
Yeying Zhu;
Xuekui Zhang;
Lin Lin

Publication type:

Article

The significance of microRNA-184 on JAK2/STAT3 signaling pathway in the formation mechanism of glioblastoma.

Published in:

Oncology Letters, 2015, v. 10, n. 6, p. 3510, doi. 10.3892/ol.2015.3798

By:

XUEKUI ZHANG;
HAITAO DING;
YAO HAN;
DEKE SUN;
HAITAO WANG;
XU ZHAI

Publication type:

Article

Deep learning methods may not outperform other machine learning methods on analyzing genomic studies.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 01, doi. 10.3389/fgene.2022.992070

By:

Yao Dong;
Shaoze Zhou;
Li Xing;
Yumeng Chen;
Ziyu Ren;
Yongfeng Dong;
Xuekui Zhang

Publication type:

Article

Software Benchmark--Classification Tree Algorithms for Cell Atlases Annotation Using Single-Cell RNA-Sequencing Data.

Published in:

Microbiology Research, 2021, v. 12, n. 2, p. 317, doi. 10.3390/microbiolres12020022

By:

Alaqeeli, Omar;
Li Xing;
Xuekui Zhang

Publication type:

Article

A Genome-Wide Association Study of Dementia Using the Electronic Medical Record.

Published in:

BioMedInformatics, 2023, v. 3, n. 1, p. 141, doi. 10.3390/biomedinformatics3010010

By:

Cao, Xiaowen;
Dong, Yao;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

Model-based clustering for identifying disease-associated SNPs in case-control genome-wide association studies.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50229-6

By:

Xu, Yan;
Xing, Li;
Su, Jessica;
Zhang, Xuekui;
Qiu, Weiliang

Publication type:

Article

The effects of inhaled and oral corticosteroids on serum inflammatory biomarkers in COPD: an exploratory study.

Published in:

Therapeutic Advances in Respiratory Disease, 2009, v. 3, n. 2, p. 73, doi. 10.1177/1753465809336697

By:

Man, S.F. Paul;
Xuekui Zhang;
Vessey, Rupert;
Walker, Terry;
Lee, Kwan;
Park, Dan;
Sin, Don D.

Publication type:

Article

PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2049, doi. 10.1093/bioinformatics/btt348

By:

Woo, Sangsoon;
Zhang, Xuekui;
Sauteraud, Renan;
Robert, François;
Gottardo, Raphael

Publication type:

Article

From bench to bedside, 2-in-1 design expedites phase 2/3 oncology drug development.

Published in:

Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1251672

By:

Cong Chen;
Xuekui Zhang

Publication type:

Article

BLESS: bagged logistic regression for biomarker identification.

Published in:

Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1336891

By:

Gardiner, Kyle;
Xuekui Zhang;
Li Xing

Publication type:

Article

Simultaneous prediction of multiple outcomes using revised stacking algorithms.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 65, doi. 10.1093/bioinformatics/btz531

By:

Xing, Li;
Lesperance, Mary L;
Zhang, Xuekui

Publication type:

Article

scAnnotate: an automated cell-type annotation tool for single-cell RNA-sequencing data.

Published in:

Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad030

By:

Ji, Xiangling;
Tsao, Danielle;
Bai, Kailun;
Tsao, Min;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0032095

By:

Xuekui Zhang;
Robertson, Gordon;
Woo, Sangsoon;
Hoffman, Brad G.;
Gottardo, Raphael

Publication type:

Article

An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq.

Published in:

PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016432

By:

Mercier, Eloi;
Droit, Arnaud;
Leping Li;
Robertson, Gordon;
Xuekui Zhang;
Gottardo, Raphael

Publication type:

Article

PICS: Probabilistic Inference for ChIP-seq.

Published in:

Biometrics, 2011, v. 67, n. 1, p. 151, doi. 10.1111/j.1541-0420.2010.01441.x

By:

Xuekui Zhang;
Robertson, Gordon;
Krzywinski, Martin;
Ning, Kaida;
Droit, Arnaud;
Jones, Steven;
Gottardo, Raphael

Publication type:

Article

Novel modelling strategies for high-frequency stock trading data.

Published in:

Financial Innovation, 2023, v. 9, n. 1, p. 1, doi. 10.1186/s40854-022-00431-9

By:

Zhang, Xuekui;
Huang, Yuying;
Xu, Ke;
Xing, Li

Publication type:

Article

STOCK MARKET OPENNESS AND MARKET QUALITY: EVIDENCE FROM THE SHANGHAI–HONG KONG STOCK CONNECT PROGRAM.

Published in:

Journal of Financial Research, 2020, v. 43, n. 2, p. 373, doi. 10.1111/jfir.12210

By:

Xu, Ke;
Zheng, Xinwei;
Pan, Deng;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

Single-Cell Sequencing of Lung Macrophages and Monocytes Reveals Novel Therapeutic Targets in COPD.

Published in:

Cells (2073-4409), 2023, v. 12, n. 24, p. 2771, doi. 10.3390/cells12242771

By:

Hu, Yushan;
Shao, Xiaojian;
Xing, Li;
Li, Xuan;
Nonis, Geoffrey M.;
Koelwyn, Graeme J.;
Zhang, Xuekui;
Sin, Don D.

Publication type:

Article

A Systematic Evaluation of Supervised Machine Learning Algorithms for Cell Phenotype Classification Using Single-Cell RNA Sequencing Data.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.836798

By:

Cao, Xiaowen;
Xing, Li;
Majd, Elham;
He, Hua;
Gu, Junhua;
Zhang, Xuekui

Publication type:

Article

Phase 1 and pharmacokinetic study of LY3007113, a p38 MAPK inhibitor, in patients with advanced cancer.

Published in:

Investigational New Drugs, 2018, v. 36, n. 4, p. 629, doi. 10.1007/s10637-017-0532-2

By:

Goldman, Jonathan W.;
Rosen, Lee S.;
Tolcher, Anthony W.;
Papadopoulos, Kyriakos;
Beeram, Muralidhar;
Shi, Peipei;
Pitou, Celine;
Bell, Robert;
Kulanthaivel, Palaniappan;
Zhang, Xuekui;
Fink, Aaron;
Chan, Edward M.;
Shahir, Ashwin;
Farrington, Daphne;
Patnaik, Amita

Publication type:

Article

Diagnostics of viral infections using high-throughput genome sequencing data.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 6, p. 1, doi. 10.1093/bib/bbae501

By:

Ning, Haochen;
Boyes, Ian;
Numanagić, Ibrahim;
Rott, Michael;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac090

By:

Cheng, Xuanjin;
Liu, Yongxing;
Wang, Jiahe;
Chen, Yujie;
Robertson, Andrew Gordon;
Zhang, Xuekui;
Jones, Steven J M;
Taubert, Stefan

Publication type:

Article

Integrative COVID-19 biological network inference with probabilistic core decomposition.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab455

By:

Guo, Yang;
Esfahani, Fatemeh;
Shao, Xiaojian;
Srinivasan, Venkatesh;
Thomo, Alex;
Xing, Li;
Zhang, Xuekui

Publication type:

Article

Predicting the daily counts of COVID-19 infection using temporal convolutional networks.

Published in:

Journal of Global Health, 2023, v. 13, p. 1, doi. 10.7189/jogh.13.03029

By:

Li, Michael;
Esfahani, Fatemeh;
Li Xing;
Xuekui Zhang

Publication type:

Article

Segmentation of patients with small cell lung cancer into responders and non-responders using the optimal cross-validation technique.

Published in:

BMC Medical Research Methodology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12874-024-02185-7

By:

Majd, Elham;
Xing, Li;
Zhang, Xuekui

Publication type:

Article