Found: 57
Select item for more details and to access through your institution.
Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011594
- By:
- Publication type:
- Article
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011371
- By:
- Publication type:
- Article
Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control.
- Published in:
- NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-022-00260-7
- By:
- Publication type:
- Article
Predicting stress response and improved protein overproduction in Bacillus subtilis.
- Published in:
- NPJ Systems Biology & Applications, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41540-022-00259-0
- By:
- Publication type:
- Article
ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05056-4
- By:
- Publication type:
- Article
Acetate reprograms gut microbiota during alcohol consumption.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31973-2
- By:
- Publication type:
- Article
Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009828
- By:
- Publication type:
- Article
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data.
- Published in:
- Metabolites (2218-1989), 2022, v. 12, n. 1, p. 14, doi. 10.3390/metabo12010014
- By:
- Publication type:
- Article
Microbiome Signatures in a Fast- and Slow-Progressing Gastric Cancer Murine Model and Their Contribution to Gastric Carcinogenesis.
- Published in:
- Microorganisms, 2021, v. 9, n. 1, p. 189, doi. 10.3390/microorganisms9010189
- By:
- Publication type:
- Article
Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.
- Published in:
- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-00142-w
- By:
- Publication type:
- Article
Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17612-8
- By:
- Publication type:
- Article
Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0985-2
- By:
- Publication type:
- Article
Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes.
- Published in:
- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-0135-y
- By:
- Publication type:
- Article
Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity.
- Published in:
- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0110-7
- By:
- Publication type:
- Article
Functional and Proteomic Analysis of Streptococcus pyogenes Virulence Upon Loss of Its Native Cas9 Nuclease.
- Published in:
- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01967
- By:
- Publication type:
- Article
Establishing microbial composition measurement standards with reference frames.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10656-5
- By:
- Publication type:
- Article
The impact of skin care products on skin chemistry and microbiome dynamics.
- Published in:
- BMC Biology, 2019, v. 17, n. 1, p. 1, doi. 10.1186/s12915-019-0660-6
- By:
- Publication type:
- Article
Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis.
- Published in:
- Science Translational Medicine, 2019, v. 11, n. 490, p. N.PAG, doi. 10.1126/scitranslmed.aat8329
- By:
- Publication type:
- Article
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006848
- By:
- Publication type:
- Article
Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-36567-x
- By:
- Publication type:
- Article
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.pcbi.1006644
- By:
- Publication type:
- Article
Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance.
- Published in:
- 2018
- By:
- Publication type:
- journal article
Optimization of carbon and energy utilization through differential translational efficiency.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06993-6
- By:
- Publication type:
- Article
Advances in metabolic modeling of oleaginous microalgae.
- Published in:
- Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1244-3
- By:
- Publication type:
- Article
ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions.
- Published in:
- PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197272
- By:
- Publication type:
- Article
Improving saliva shotgun metagenomics by chemical host DNA depletion.
- Published in:
- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-018-0426-3
- By:
- Publication type:
- Article
Metabolic capability and in situ activity of microorganisms in an oil reservoir.
- Published in:
- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0392-1
- By:
- Publication type:
- Article
Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote Chlorella vulgaris.
- Published in:
- Plant Physiology, 2018, v. 176, n. 1, p. 450, doi. 10.1104/pp.17.00605
- By:
- Publication type:
- Article
Elucidation of complexity and prediction of interactions in microbial communities.
- Published in:
- Microbial Biotechnology, 2017, v. 10, n. 6, p. 1500, doi. 10.1111/1751-7915.12855
- By:
- Publication type:
- Article
Evidence for fungal and chemodenitrification based N<sub>2</sub>O flux from nitrogen impacted coastal sediments.
- Published in:
- Nature Communications, 2017, v. 8, n. 6, p. 15595, doi. 10.1038/ncomms15595
- By:
- Publication type:
- Article
Production of organics from CO<sub>2</sub> by microbial electrosynthesis ( MES) at high temperature.
- Published in:
- Journal of Chemical Technology & Biotechnology, 2017, v. 92, n. 2, p. 375, doi. 10.1002/jctb.5015
- By:
- Publication type:
- Article
FRT - FONDATION RENE TOURAINE.
- Published in:
- Experimental Dermatology, 2016, v. 25, n. 11, p. 917, doi. 10.1111/exd.13160
- By:
- Publication type:
- Article
Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.
- Published in:
- Plant Physiology, 2016, v. 172, n. 1, p. 589, doi. 10.1104/pp.16.00593
- By:
- Publication type:
- Article
Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom.
- Published in:
- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155038
- By:
- Publication type:
- Article
Investigating Moorella thermoacetica metabolism with a genome-scale constraint-based metabolic model.
- Published in:
- Integrative Biology, 2015, v. 7, n. 8, p. 869, doi. 10.1039/c5ib00095e
- By:
- Publication type:
- Article
Unraveling interactions in microbial communities - from co-cultures to microbiomes.
- Published in:
- Journal of Microbiology, 2015, v. 53, n. 5, p. 295, doi. 10.1007/s12275-015-5060-1
- By:
- Publication type:
- Article
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0110-6
- By:
- Publication type:
- Article
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 4, p. 757, doi. 10.1038/ismej.2013.187
- By:
- Publication type:
- Article
Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in <i>Geobacter metallireducens</i>.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003575
- By:
- Publication type:
- Article
Determining the Control Circuitry of Redox Metabolism at the Genome-Scale.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pgen.1004264
- By:
- Publication type:
- Article
Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states.
- Published in:
- BMC Biology, 2014, v. 12, n. 1, p. 2, doi. 10.1186/1741-7007-12-4
- By:
- Publication type:
- Article
Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.
- Published in:
- Microbial Cell Factories, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1475-2859-12-118
- By:
- Publication type:
- Article
Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.
- Published in:
- Nature Communications, 2013, v. 4, n. 11, p. 2809, doi. 10.1038/ncomms3809
- By:
- Publication type:
- Article
Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.
- Published in:
- Nature Communications, 2013, v. 4, n. 4, p. 1755, doi. 10.1038/ncomms2743
- By:
- Publication type:
- Article
The Genome Organization of Thermotoga maritima Reflects Its Lifestyle.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pgen.1003485
- By:
- Publication type:
- Article
The microbiome extends to subepidermal compartments of normal skin.
- Published in:
- Nature Communications, 2013, v. 4, n. 2, p. 1431, doi. 10.1038/ncomms2441
- By:
- Publication type:
- Article
Crystal ball - 2013.
- Published in:
- Microbial Biotechnology, 2013, v. 6, n. 1, p. 3, doi. 10.1111/1751-7915.12014
- By:
- Publication type:
- Article
A road map for the development of community systems (CoSy) biology.
- Published in:
- Nature Reviews Microbiology, 2012, v. 10, n. 5, p. 366, doi. 10.1038/nrmicro2763
- By:
- Publication type:
- Article
Deciphering the transcriptional regulatory logic of amino acid metabolism.
- Published in:
- Nature Chemical Biology, 2012, v. 8, n. 1, p. 65, doi. 10.1038/nchembio.710
- By:
- Publication type:
- Article
Deciphering the regulatory codes in bacterial genomes.
- Published in:
- Biotechnology Journal, 2011, v. 6, n. 9, p. 1052, doi. 10.1002/biot.201000349
- By:
- Publication type:
- Article