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External control arm analysis: an evaluation of propensity score approaches, G-computation, and doubly debiased machine learning.
Published in:
BMC Medical Research Methodology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12874-022-01799-z
By:
- Loiseau, Nicolas;
- Trichelair, Paul;
- He, Maxime;
- Andreux, Mathieu;
- Zaslavskiy, Mikhail;
- Wainrib, Gilles;
- Blum, Michael G. B.
Publication type:
Article
Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 13, p. 6367, doi. 10.1093/nar/gks268
By:
- Daboussi, Fayza;
- Zaslavskiy, Mikhail;
- Poirot, Laurent;
- Loperfido, Mariana;
- Gouble, Agnès;
- Guyot, Valerie;
- Leduc, Sophie;
- Galetto, Roman;
- Grizot, Sylvestre;
- Oficjalska, Danusia;
- Perez, Christophe;
- Delacôte, Fabien;
- Dupuy, Aurélie;
- Chion-Sotinel, Isabelle;
- Le Clerre, Diane;
- Lebuhotel, Céline;
- Danos, Olivier;
- Lemaire, Frédéric;
- Oussedik, Kahina;
- Cédrone, Frédéric
Publication type:
Article
Pacpaint: a histology-based deep learning model uncovers the extensive intratumor molecular heterogeneity of pancreatic adenocarcinoma.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39026-y
By:
- Saillard, Charlie;
- Delecourt, Flore;
- Schmauch, Benoit;
- Moindrot, Olivier;
- Svrcek, Magali;
- Bardier-Dupas, Armelle;
- Emile, Jean Francois;
- Ayadi, Mira;
- Rebours, Vinciane;
- de Mestier, Louis;
- Hammel, Pascal;
- Neuzillet, Cindy;
- Bachet, Jean Baptiste;
- Iovanna, Juan;
- Dusetti, Nelson;
- Blum, Yuna;
- Richard, Magali;
- Kermezli, Yasmina;
- Paradis, Valerie;
- Zaslavskiy, Mikhail
Publication type:
Article
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09799-2
By:
- Menden, Michael P.;
- Wang, Dennis;
- Mason, Mike J.;
- Szalai, Bence;
- Bulusu, Krishna C.;
- Yuanfang Guan;
- Yu, Thomas;
- Jaewoo Kang;
- Minji Jeon;
- Wolfinger, Russ;
- Tin Nguyen;
- Zaslavskiy, Mikhail;
- Ghazoui, Zara;
- Ahsen, Mehmet Eren;
- Vogel, Robert;
- Neto, Elias Chaibub;
- Norman, Thea;
- Tang, Eric K. Y.;
- Garnett, Mathew J.;
- Di Veroli, Giovanni Y.
Publication type:
Article
Efficient design of meganucleases using a machine learning approach.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-191
By:
- Zaslavskiy, Mikhail;
- Bertonati, Claudia;
- Duchateau, Philippe;
- Duclert, Aymeric;
- Silva, George H.
Publication type:
Article
A new protein binding pocket similarity measurebased on comparison of clouds of atoms in 3D:application to ligand prediction.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 99, doi. 10.1186/1471-2105-11-99
By:
- Hoffmann, Brice;
- Zaslavskiy, Mikhail;
- Vert, Jean-Philippe;
- Stoven, Véronique
Publication type:
Article
Exploring the transcription activator-like effectors scaffold versatility to expand the toolbox of designer nucleases.
Published in:
BMC Molecular Biology, 2014, v. 15, n. 1, p. 13, doi. 10.1186/1471-2199-15-13
By:
- Juillerat, Alexandre;
- Beurdeley, Marine;
- Valton, Julien;
- Thomas, Séverine;
- Dubois, Gwendoline;
- Zaslavskiy, Mikhail;
- Mikolajczak, Jérome;
- Bietz, Fabian;
- Silva, George H.;
- Duclert, Aymeric;
- Daboussi, Fayza;
- Duchateau, Philippe
Publication type:
Article
Global alignment of protein-protein interaction networks by graph matching methods.
Published in:
Bioinformatics, 2009, v. 25, n. 12, p. i259, doi. 10.1093/bioinformatics/btp196
By:
- Mikhail Zaslavskiy;
- Francis Bach;
- Jean-Philippe Vert
Publication type:
Article
A deep learning model to predict RNA-Seq expression of tumours from whole slide images.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17678-4
By:
- Schmauch, Benoît;
- Romagnoni, Alberto;
- Pronier, Elodie;
- Saillard, Charlie;
- Maillé, Pascale;
- Calderaro, Julien;
- Kamoun, Aurélie;
- Sefta, Meriem;
- Toldo, Sylvain;
- Zaslavskiy, Mikhail;
- Clozel, Thomas;
- Moarii, Matahi;
- Courtiol, Pierre;
- Wainrib, Gilles
Publication type:
Article

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