Works by Zarnack, Kathi

Results: 45
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    Hypoxia-altered cholesterol homeostasis enhances the expression of interferon-stimulated genes upon SARS-CoV-2 infections in monocytes.

    Published in:
    Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1121864
    By:
    • Bauer, Rebekka;
    • Meyer, Sofie Patrizia;
    • Raue, Rebecca;
    • Palmer, Megan A.;
    • Guerrero Ruiz, Vanesa Maria;
    • Cardamone, Giulia;
    • Rösser, Silvia;
    • Heffels, Milou;
    • Roesmann, Fabian;
    • Wilhelm, Alexander;
    • Lütjohann, Dieter;
    • Zarnack, Kathi;
    • Fuhrmann, Dominik Christian;
    • Widera, Marek;
    • Schmid, Tobias;
    • Brüne, Bernhard
    Publication type:
    Article
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    An atlas of RNA-dependent proteins in cell division reveals the riboregulation of mitotic protein-protein interactions.

    Published in:
    Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57671-3
    By:
    • Rajagopal, Varshni;
    • Seiler, Jeanette;
    • Nasa, Isha;
    • Cantarella, Simona;
    • Theiss, Jana;
    • Herget, Franziska;
    • Kaifer, Bianca;
    • Klostermann, Melina;
    • Will, Rainer;
    • Schneider, Martin;
    • Helm, Dominic;
    • König, Julian;
    • Zarnack, Kathi;
    • Diederichs, Sven;
    • Kettenbach, Arminja N.;
    • Caudron-Herger, Maïwen
    Publication type:
    Article
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    The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1814-0
    By:
    • Hildebrandt, Andrea;
    • Brüggemann, Mirko;
    • Rücklé, Cornelia;
    • Boerner, Susan;
    • Heidelberger, Jan B.;
    • Busch, Anke;
    • Hänel, Heike;
    • Voigt, Andrea;
    • Möckel, Martin M.;
    • Ebersberger, Stefanie;
    • Scholz, Anica;
    • Dold, Annabelle;
    • Schmid, Tobias;
    • Ebersberger, Ingo;
    • Roignant, Jean-Yves;
    • Zarnack, Kathi;
    • König, Julian;
    • Beli, Petra
    Publication type:
    Article
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    Insights into the design and interpretation of iCLIP experiments.

    Published in:
    Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-016-1130-x
    By:
    • Haberman, Nejc;
    • Huppertz, Ina;
    • Attig, Jan;
    • König, Julian;
    • Zhen Wang;
    • Hauer, Christian;
    • Hentze, Matthias W.;
    • Kulozik, Andreas E.;
    • Hir, Hervé Le;
    • Curk, Tomaž;
    • Sibley, Christopher R.;
    • Zarnack, Kathi;
    • Ule, Jernej
    Publication type:
    Article
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    Circular RNAs increase during vascular cell differentiation and are biomarkers for vascular disease Open Access.

    Published in:
    Cardiovascular Research, 2025, v. 121, n. 3, p. 405, doi. 10.1093/cvr/cvaf013
    By:
    • Northoff, Bernd H;
    • Herbst, Andreas;
    • Wenk, Catharina;
    • Weindl, Lena;
    • Gäbel, Gabor;
    • Brezski, Andre;
    • Zarnack, Kathi;
    • Küpper, Alina;
    • Dimmeler, Stefanie;
    • Moretti, Alessandra;
    • Laugwitz, Karl-Ludwig;
    • Engelhardt, Stefan;
    • Maegdefessel, Lars;
    • Boon, Reinier A;
    • Doppler, Stefanie;
    • Dreßen, Martina;
    • Lahm, Harald;
    • Lange, Rüdiger;
    • Krane, Markus;
    • Krohn, Knut
    Publication type:
    Article
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    mRNA trafficking in fungi.

    Published in:
    Molecular Genetics & Genomics, 2007, v. 278, n. 4, p. 347, doi. 10.1007/s00438-007-0271-8
    By:
    • Kathi Zarnack;
    • Michael Feldbrügge
    Publication type:
    Article
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    High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31818-y
    By:
    • Cortés-López, Mariela;
    • Schulz, Laura;
    • Enculescu, Mihaela;
    • Paret, Claudia;
    • Spiekermann, Bea;
    • Quesnel-Vallières, Mathieu;
    • Torres-Diz, Manuel;
    • Unic, Sebastian;
    • Busch, Anke;
    • Orekhova, Anna;
    • Kuban, Monika;
    • Mesitov, Mikhail;
    • Mulorz, Miriam M.;
    • Shraim, Rawan;
    • Kielisch, Fridolin;
    • Faber, Jörg;
    • Barash, Yoseph;
    • Thomas-Tikhonenko, Andrei;
    • Zarnack, Kathi;
    • Legewie, Stefan
    Publication type:
    Article
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    The RNA-binding protein HuR is essential for the B cell antibody response.

    Published in:
    Nature Immunology, 2015, v. 16, n. 4, p. 415, doi. 10.1038/ni.3115
    By:
    • Diaz-Muñoz, Manuel D;
    • Bell, Sarah E;
    • Fairfax, Kirsten;
    • Monzon-Casanova, Elisa;
    • Cunningham, Adam F;
    • Gonzalez-Porta, Mar;
    • Andrews, Simon R;
    • Bunik, Victoria I;
    • Zarnack, Kathi;
    • Curk, Tomaž;
    • Heggermont, Ward A;
    • Heymans, Stephane;
    • Gibson, Gary E;
    • Kontoyiannis, Dimitris L;
    • Ule, Jernej;
    • Turner, Martin
    Publication type:
    Article
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    Cellular differentiation state modulates the mRNA export activity of SR proteins.

    Published in:
    Journal of Cell Biology, 2017, v. 216, n. 7, p. 1993, doi. 10.1083/jcb.201610051
    By:
    • Botti, Valentina;
    • McNicoll, François;
    • Steiner, Michaela C.;
    • Richter, Florian M.;
    • Solovyeva, Anfisa;
    • Wegener, Marius;
    • Schwich, Oliver D.;
    • Poser, Ina;
    • Zarnack, Kathi;
    • Wittig, Ilka;
    • Neugebauer, Karla M.;
    • Müller-McNicoll, Michaela
    Publication type:
    Article
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    Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation.

    Published in:
    Nucleic Acids Research, 2024, n. 22, p. 14205, doi. 10.1093/nar/gkae1107
    By:
    • Niedner-Boblenz, Annika;
    • Monecke, Thomas;
    • Hennig, Janosch;
    • Klostermann, Melina;
    • Hofweber, Mario;
    • Davydova, Elena;
    • Gerber, André P;
    • Anosova, Irina;
    • Mayer, Wieland;
    • Müller, Marisa;
    • Heym, Roland Gerhard;
    • Janowski, Robert;
    • Paillart, Jean-Christophe;
    • Dormann, Dorothee;
    • Zarnack, Kathi;
    • Sattler, Michael;
    • Niessing, Dierk
    Publication type:
    Article
    33

    A plant-specific clade of serine/arginine-rich proteins regulates RNA splicing homeostasis and thermotolerance in tomato.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. 19, p. 11466, doi. 10.1093/nar/gkae730
    By:
    • Rosenkranz, Remus R E;
    • Vraggalas, Stavros;
    • Keller, Mario;
    • Sankaranarayanan, Srimeenakshi;
    • McNicoll, François;
    • Löchli, Karin;
    • Bublak, Daniela;
    • Benhamed, Moussa;
    • Crespi, Martin;
    • Berberich, Thomas;
    • Bazakos, Christos;
    • Feldbrügge, Michael;
    • Schleiff, Enrico;
    • Müller-McNicoll, Michaela;
    • Zarnack, Kathi;
    • Fragkostefanakis, Sotirios
    Publication type:
    Article
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    Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. 3, p. 1297, doi. 10.1093/nar/gkac1237
    By:
    • Molitor, Lena;
    • Klostermann, Melina;
    • Bacher, Sabrina;
    • Merl-Pham, Juliane;
    • Spranger, Nadine;
    • Burczyk, Sandra;
    • Ketteler, Carolin;
    • Rusha, Ejona;
    • Tews, Daniel;
    • Pertek, Anna;
    • Proske, Marcel;
    • Busch, Anke;
    • Reschke, Sarah;
    • Feederle, Regina;
    • Hauck, Stefanie M;
    • Blum, Helmut;
    • Drukker, Micha;
    • Fischer-Posovszky, Pamela;
    • König, Julian;
    • Zarnack, Kathi
    Publication type:
    Article
    36

    Poison cassette exon splicing of SRSF6 regulates nuclear speckle dispersal and the response to hypoxia.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. 2, p. 870, doi. 10.1093/nar/gkac1225
    By:
    • de Oliveira Freitas Machado, Camila;
    • Schafranek, Michal;
    • Brüggemann, Mirko;
    • Hernández Cañás, María Clara;
    • Keller, Mario;
    • Di Liddo, Antonella;
    • Brezski, Andre;
    • Blümel, Nicole;
    • Arnold, Benjamin;
    • Bremm, Anja;
    • Wittig, Ilka;
    • Jaé, Nicolas;
    • McNicoll, François;
    • Dimmeler, Stefanie;
    • Zarnack, Kathi;
    • Müller-McNicoll, Michaela
    Publication type:
    Article
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    Deep and accurate detection of m<sup>6</sup>A RNA modifications using miCLIP2 and m6Aboost machine learning.

    Published in:
    Nucleic Acids Research, 2021, v. 49, n. 16, p. e92, doi. 10.1093/nar/gkab485
    By:
    • Körtel, Nadine;
    • Rücklé, Cornelia;
    • Zhou, You;
    • Busch, Anke;
    • Hoch-Kraft, Peter;
    • Sutandy, F X Reymond;
    • Haase, Jacob;
    • Pradhan, Mihika;
    • Musheev, Michael;
    • Ostareck, Dirk;
    • Ostareck-Lederer, Antje;
    • Dieterich, Christoph;
    • Hüttelmaier, Stefan;
    • Niehrs, Christof;
    • Rausch, Oliver;
    • Dominissini, Dan;
    • König, Julian;
    • Zarnack, Kathi
    Publication type:
    Article
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