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Identification of key drivers of antimicrobial resistance in Enterococcus using machine learning.
Published in:
Canadian Journal of Microbiology, 2024, v. 70, n. 10, p. 446, doi. 10.1139/cjm-2024-0049
By:
- Kim, Jee In;
- Manuele, Alexander;
- Maguire, Finlay;
- Zaheer, Rahat;
- McAllister, Tim A.;
- Beiko, Robert G.
Publication type:
Article
Enterococci as a One Health indicator of antimicrobial resistance.
Published in:
Canadian Journal of Microbiology, 2024, v. 70, n. 8, p. 303, doi. 10.1139/cjm-2024-0024
By:
- Zaidi, Sani-e-Zehra;
- Zaheer, Rahat;
- Zovoilis, Athanasios;
- McAllister, Tim A.
Publication type:
Article
Comparative genomics of Enterococcus spp. isolated from bovine feces.
Published in:
BMC Microbiology, 2017, v. 17, p. 1, doi. 10.1186/s12866-017-0962-1
By:
- Beukers, Alicia G.;
- Zaheer, Rahat;
- Goji, Noriko;
- Amoako, Kingsley K.;
- Chaves, Alexandre V.;
- Ward, Michael P.;
- McAllister, Tim A.
Publication type:
Article
Genomic Characterization of Carbapenem-Resistant Bacteria from Beef Cattle Feedlots.
Published in:
Antibiotics (2079-6382), 2023, v. 12, n. 6, p. 960, doi. 10.3390/antibiotics12060960
By:
- Zaidi, Sani-e-Zehra;
- Zaheer, Rahat;
- Thomas, Krysty;
- Abeysekara, Sujeema;
- Haight, Travis;
- Saville, Luke;
- Stuart-Edwards, Matthew;
- Zovoilis, Athanasios;
- McAllister, Tim A.
Publication type:
Article
Bovine Respiratory Disease: Conventional to Culture-Independent Approaches to Studying Antimicrobial Resistance in North America.
Published in:
Antibiotics (2079-6382), 2022, v. 11, n. 4, p. N.PAG, doi. 10.3390/antibiotics11040487
By:
- Andrés-Lasheras, Sara;
- Jelinski, Murray;
- Zaheer, Rahat;
- McAllister, Tim A.
Publication type:
Article
Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Published in:
Nucleic Acids Research, 2017, v. 45, n. 18, p. e159, doi. 10.1093/nar/gkx702
By:
- Marinier, Eric;
- Zaheer, Rahat;
- Berry, Chrystal;
- Weedmark, Kelly A.;
- Domaratzki, Michael;
- Mabon, Philip;
- Knox, Natalie C.;
- Reimer, Aleisha R.;
- Graham, Morag R.;
- Chui, Linda;
- Patterson-Fortin, Laura;
- Jian Zhang;
- Pagotto, Franco;
- Farber, Jeff;
- Mahony, Jim;
- Seyer, Karine;
- Bekal, Sadjia;
- Tremblay, Cécile;
- Isaac-Renton, Judy;
- Prystajecky, Natalie
Publication type:
Article
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems.
Published in:
Scientific Reports, 2016, p. 24645, doi. 10.1038/srep24645
By:
- Noyes, Noelle R.;
- Yang, Xiang;
- Linke, Lyndsey M.;
- Magnuson, Roberta J.;
- Cook, Shaun R.;
- Zaheer, Rahat;
- Yang, Hua;
- Woerner, Dale R.;
- Geornaras, Ifigenia;
- McArt, Jessica A.;
- Gow, Sheryl P.;
- Ruiz, Jaime;
- Jones, Kenneth L.;
- Boucher, Christina A.;
- McAllister, Tim A.;
- Belk, Keith E.;
- Morley, Paul S.
Publication type:
Article
Genomic Characterization of Enterococcus hirae From Beef Cattle Feedlots and Associated Environmental Continuum.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.859990
By:
- Zaidi, Sani-e-Zehra;
- Zaheer, Rahat;
- Barbieri, Ruth;
- Cook, Shaun R.;
- Hannon, Sherry J.;
- Booker, Calvin W.;
- Church, Deirdre;
- Van Domselaar, Gary;
- Zovoilis, Athanasios;
- McAllister, Tim A.
Publication type:
Article
Identification of a megaplasmid centromere reveals genetic structural diversity within the repABC family of basic replicons.
Published in:
Molecular Microbiology, 2006, v. 59, n. 5, p. 1559, doi. 10.1111/j.1365-2958.2006.05040.x
By:
- MacLellan, Shawn R.;
- Zaheer, Rahat;
- Sartor, Andrea L.;
- MacLean, Allyson M.;
- Finan, Turlough M.
Publication type:
Article
Phosphate limitation induces catalase expression in Sinorhizobium meliloti, Pseudomonas aeruginosa and Agrobacterium tumefaciens.
Published in:
Molecular Microbiology, 2005, v. 58, n. 3, p. 877, doi. 10.1111/j.1365-2958.2005.04874.x
By:
- Ze-Chun Yuan;
- Zaheer, Rahat;
- Finan, Turlough M.
Publication type:
Article
<i>Escherichia coli</i> O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0098115
By:
- Xu, Yong;
- Dugat-Bony, Eric;
- Zaheer, Rahat;
- Selinger, Lorna;
- Barbieri, Ruth;
- Munns, Krysty;
- McAllister, Tim A.;
- Selinger, L. Brent
Publication type:
Article
Comparison of antimicrobial resistance genes in feedlots and urban wastewater.
Published in:
Canadian Journal of Veterinary Research / Revue Canadienne de Recherche Vétérinaire, 2018, v. 82, n. 1, p. 24
By:
- Beukers, Alicia G.;
- Zaheer, Rahat;
- Cook, Shaun R.;
- Chaves, Alexandre V.;
- Ward, Michael P.;
- Tymensen, Lisa;
- Morley, Paul S.;
- Hannon, Sherry;
- Booker, Calvin W.;
- Read, Ron R.;
- McAllister, Tim A.
Publication type:
Article
Lower Respiratory Tract Microbiome and Resistome of Bovine Respiratory Disease Mortalities.
Published in:
Microbial Ecology, 2019, v. 78, n. 2, p. 446, doi. 10.1007/s00248-019-01361-3
By:
- Klima, Cassidy L.;
- Holman, Devin B.;
- Ralston, Brenda J.;
- Stanford, Kim;
- Zaheer, Rahat;
- Alexander, Trevor W.;
- McAllister, Tim A.
Publication type:
Article
Role of biofilms in antimicrobial resistance of the bacterial bovine respiratory disease complex.
Published in:
Frontiers in Veterinary Science, 2024, p. 1, doi. 10.3389/fvets.2024.1353551
By:
- Andrés-Lasheras, Sara;
- Zaheer, Rahat;
- Jelinski, Murray;
- McAllister, Tim A.
Publication type:
Article
Effect of Antimicrobial Use in Conventional Versus Natural Cattle Feedlots on the Microbiome and Resistome.
Published in:
Microorganisms, 2023, v. 11, n. 12, p. 2982, doi. 10.3390/microorganisms11122982
By:
- Lee, Catrione;
- Zaheer, Rahat;
- Munns, Krysty;
- Holman, Devin B.;
- Van Domselaar, Gary;
- Zovoilis, Athanasios;
- McAllister, Tim A.
Publication type:
Article
Comparative Genomic Analysis of Enterococci across Sectors of the One Health Continuum.
Published in:
Microorganisms, 2023, v. 11, n. 3, p. 727, doi. 10.3390/microorganisms11030727
By:
- Zaidi, Sani-e-Zehra;
- Zaheer, Rahat;
- Poulin-Laprade, Dominic;
- Scott, Andrew;
- Rehman, Muhammad Attiq;
- Diarra, Moussa;
- Topp, Edward;
- Domselaar, Gary Van;
- Zovoilis, Athanasios;
- McAllister, Tim A.
Publication type:
Article
Comparative Microbiomes of the Respiratory Tract and Joints of Feedlot Cattle Mortalities.
Published in:
Microorganisms, 2022, v. 10, n. 1, p. 134, doi. 10.3390/microorganisms10010134
By:
- Li, Chunli;
- Zaheer, Rahat;
- Kinnear, Andrea;
- Jelinski, Murray;
- McAllister, Tim A.
Publication type:
Article
A One Health Comparative Assessment of Antimicrobial Resistance in Generic and Extended-Spectrum Cephalosporin-Resistant Escherichia coli from Beef Production, Sewage and Clinical Settings.
Published in:
Microorganisms, 2020, v. 8, n. 6, p. 885, doi. 10.3390/microorganisms8060885
By:
- Adator, Emelia H.;
- Narvaez-Bravo, Claudia;
- Zaheer, Rahat;
- Cook, Shaun R.;
- Tymensen, Lisa;
- Hannon, Sherry J.;
- Booker, Calvin W.;
- Church, Deirdre;
- Read, Ron R.;
- McAllister, Tim A.
Publication type:
Article
Whole Genome Sequencing Differentiates Presumptive Extended Spectrum Beta-Lactamase Producing Escherichia coli along Segments of the One Health Continuum.
Published in:
Microorganisms, 2020, v. 8, n. 3, p. 448, doi. 10.3390/microorganisms8030448
By:
- Adator, Emelia H.;
- Walker, Matthew;
- Narvaez-Bravo, Claudia;
- Zaheer, Rahat;
- Goji, Noriko;
- Cook, Shaun R.;
- Tymensen, Lisa;
- Hannon, Sherry J.;
- Church, Deirdre;
- Booker, Calvin W.;
- Amoako, Kingsley;
- Nadon, Celine A.;
- Read, Ron;
- McAllister, Tim A.
Publication type:
Article
Antimicrobial Resistance in Members of the Bacterial Bovine Respiratory Disease Complex Isolated from Lung Tissue of Cattle Mortalities Managed with or without the Use of Antimicrobials.
Published in:
Microorganisms, 2020, v. 8, n. 2, p. 288, doi. 10.3390/microorganisms8020288
By:
- Stanford, Kim;
- Zaheer, Rahat;
- Klima, Cassidy;
- McAllister, Tim;
- Peters, Delores;
- Niu, Yan D.;
- Ralston, Brenda
Publication type:
Article
Antimicrobial Sensitivity Testing of Mycoplasma bovis Isolates Derived from Western Canadian Feedlot Cattle.
Published in:
Microorganisms, 2020, v. 8, n. 1, p. 124, doi. 10.3390/microorganisms8010124
By:
- Jelinski, Murray;
- Kinnear, Andrea;
- Gesy, Karen;
- Andrés-Lasheras, Sara;
- Zaheer, Rahat;
- Weese, Scott;
- McAllister, Tim A.
Publication type:
Article
Quantification and Multidrug Resistance Profiles of Vancomycin-Resistant Enterococci Isolated from Two Wastewater Treatment Plants in the Same Municipality.
Published in:
Microorganisms, 2019, v. 7, n. 12, p. 626, doi. 10.3390/microorganisms7120626
By:
- Sanderson, Haley;
- Ortega-Polo, Rodrigo;
- McDermott, Kevin;
- Hall, Geoffrey;
- Zaheer, Rahat;
- Brown, R. Stephen;
- Majury, Anna;
- McAllister, Tim A.;
- Liss, Steven N.
Publication type:
Article
Characterization of Non-O157 Escherichia coli from Cattle Faecal Samples in the North-West Province of South Africa.
Published in:
Microorganisms, 2019, v. 7, n. 8, p. 272, doi. 10.3390/microorganisms7080272
By:
- Bumunang, Emmanuel W.;
- McAllister, Tim A.;
- Zaheer, Rahat;
- Ortega Polo, Rodrigo;
- Stanford, Kim;
- King, Robin;
- Niu, Yan D.;
- Ateba, Collins N.
Publication type:
Article
Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61002-5
By:
- Zaheer, Rahat;
- Cook, Shaun R.;
- Barbieri, Ruth;
- Goji, Noriko;
- Cameron, Andrew;
- Petkau, Aaron;
- Polo, Rodrigo Ortega;
- Tymensen, Lisa;
- Stamm, Courtney;
- Song, Jiming;
- Hannon, Sherry;
- Jones, Tineke;
- Church, Deirdre;
- Booker, Calvin W.;
- Amoako, Kingsley;
- Van Domselaar, Gary;
- Read, Ron R.;
- McAllister, Tim A.
Publication type:
Article
Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria.
Published in:
Nucleic Acids Research, 2006, v. 34, n. 9, p. 2686, doi. 10.1093/nar/gkl365
By:
- Yuan, Ze-Chun;
- Zaheer, Rahat;
- Morton, Richard;
- Finan, Turlough M.
Publication type:
Article
Investigation of Macrolide Resistance Genotypes in Mycoplasma bovis Isolates from Canadian Feedlot Cattle.
Published in:
Pathogens, 2020, v. 9, n. 8, p. 622, doi. 10.3390/pathogens9080622
By:
- Kinnear, Andrea;
- McAllister, Tim A.;
- Zaheer, Rahat;
- Waldner, Matthew;
- Ruzzini, Antonio C.;
- Andrés-Lasheras, Sara;
- Parker, Sarah;
- Hill, Janet E.;
- Jelinski, Murray D.
Publication type:
Article
Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria.
Published in:
Environmental Microbiology, 2009, v. 11, n. 6, p. 1572, doi. 10.1111/j.1462-2920.2009.01885.x
By:
- Zaheer, Rahat;
- Morton, Richard;
- Proudfoot, Mike;
- Yakunin, Alexander;
- Finan, Turlough M.
Publication type:
Article
In Silico Analysis of Shiga Toxin-Producing Escherichia coli O157:H7 Strains from Presumptive Super- and Low-Shedder Cattle.
Published in:
Toxins, 2024, v. 16, n. 2, p. 86, doi. 10.3390/toxins16020086
By:
- Bumunang, Emmanuel W.;
- Castro, Vinicius S.;
- Alexander, Trevor;
- Zaheer, Rahat;
- McAllister, Tim A.;
- Guan, Le Luo;
- Stanford, Kim
Publication type:
Article
Genomic Analysis of Shiga Toxin-Producing E. coli O157 Cattle and Clinical Isolates from Alberta, Canada.
Published in:
Toxins, 2022, v. 14, n. 9, p. 603, doi. 10.3390/toxins14090603
By:
- Bumunang, Emmanuel W.;
- Zaheer, Rahat;
- Stanford, Kim;
- Laing, Chad;
- Niu, Dongyan;
- Guan, Le Luo;
- Chui, Linda;
- Tarr, Gillian A. M.;
- McAllister, Tim A.
Publication type:
Article
Bacteriocin Occurrence and Activity in Escherichia coli Isolated from Bovines and Wastewater.
Published in:
Toxins, 2019, v. 11, n. 8, p. 475, doi. 10.3390/toxins11080475
By:
- Cameron, Andrew;
- Zaheer, Rahat;
- Adator, Emelia H.;
- Barbieri, Ruth;
- Reuter, Tim;
- McAllister, Tim A.
Publication type:
Article
Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants.
Published in:
BMC Microbiology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12866-019-1683-4
By:
- Sanderson, Haley;
- Ortega-Polo, Rodrigo;
- Zaheer, Rahat;
- Goji, Noriko;
- Amoako, Kingsley K.;
- Brown, R. Stephen;
- Majury, Anna;
- Liss, Steven N.;
- McAllister, Tim A.
Publication type:
Article
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent.
Published in:
BMC Microbiology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12866-019-1548-x
By:
- Zaheer, Rahat;
- Lakin, Steven M.;
- Polo, Rodrigo Ortega;
- Cook, Shaun R.;
- Larney, Francis J.;
- Morley, Paul S.;
- Booker, Calvin W.;
- Hannon, Sherry J.;
- Van Domselaar, Gary;
- Read, Ron R.;
- McAllister, Tim A.
Publication type:
Article
Dissipation of Antimicrobial Resistance Determinants in Composted and Stockpiled Beef Cattle Manure.
Published in:
Journal of Environmental Quality, 2016, v. 45, n. 2, p. 528, doi. 10.2134/jeq2015.03.0146
By:
- Xu, Shanwei;
- Sura, Srinivas;
- Zaheer, Rahat;
- George Wang;
- Smith, Alanna;
- Cook, Shaun;
- Olson, Andrew F.;
- Cessna, Allan J.;
- Larney, Francis J.;
- McAllister, Tim A.
Publication type:
Article
Author Correction: Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum.
Published in:
2020
By:
- Zaheer, Rahat;
- Cook, Shaun R.;
- Barbieri, Ruth;
- Goji, Noriko;
- Cameron, Andrew;
- Petkau, Aaron;
- Polo, Rodrigo Ortega;
- Tymensen, Lisa;
- Stamm, Courtney;
- Song, Jiming;
- Hannon, Sherry;
- Jones, Tineke;
- Church, Deirdre;
- Booker, Calvin W.;
- Amoako, Kingsley;
- Van Domselaar, Gary;
- Read, Ron R.;
- McAllister, Tim A.
Publication type:
Correction Notice
Correction: Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine.
Published in:
2017
By:
- Zaheer, Rahat;
- Dugat-Bony, Eric;
- Holman, Devin B.;
- Cousteix, Elodie;
- Xu, Yong;
- Munns, Krysty;
- Selinger, Lorna J.;
- Barbieri, Rutn;
- Alexander, Trevor;
- McAllister, Tim A.;
- Selinger, L. Brent
Publication type:
Correction Notice
Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine.
Published in:
PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0170050
By:
- Zaheer, Rahat;
- Dugat-Bony, Eric;
- Holman, Devon;
- Cousteix, Elodie;
- Xu, Yong;
- Munns, Krysty;
- Selinger, Lorna J.;
- Barbieri, Rutn;
- Alexander, Trevor;
- McAllister, Tim A.;
- Selinger, L. Brent
Publication type:
Article
Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle.
Published in:
PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0151673
By:
- Munns, Krysty D.;
- Zaheer, Rahat;
- Xu, Yong;
- Stanford, Kim;
- Laing, Chad R.;
- Gannon, Victor P. J.;
- Selinger, L. Brent;
- McAllister, Tim A.
Publication type:
Article
Comparative Genomic Analysis of Mannheimia haemolytica from Bovine Sources.
Published in:
PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149520
By:
- Klima, Cassidy L.;
- Cook, Shaun R.;
- Zaheer, Rahat;
- Laing, Chad;
- Gannon, Vick P.;
- Xu, Yong;
- Rasmussen, Jay;
- Potter, Andrew;
- Hendrick, Steve;
- Alexander, Trevor W.;
- McAllister, Tim A.
Publication type:
Article
Liver abscess microbiota of beef cattle administered in-feed tylosin differ according to abscess size and fraction.
Published in:
Journal of Animal Science, 2024, v. 102, p. 740, doi. 10.1093/jas/skae234.835
By:
- Gruninger, Robert J.;
- O’Hara, Eóin;
- Zaheer, Rahat;
- Andrés-Lasheras, Sara;
- McAllister, Tim A.
Publication type:
Article
Investigating the emergence of antimicrobial resistance in Mycoplasma bovis from feedlot cattle.
Published in:
2024
By:
- Andrés-Lasheras, Sara;
- Zaheer, Rahat;
- Ruzzini, Antonio;
- Jelinski, Murray D.;
- McAllister, Tim A.
Publication type:
Abstract
Metagenomic analysis of ensiled grocery food waste.
Published in:
Journal of Animal Science, 2024, v. 102, p. 304, doi. 10.1093/jas/skae234.348
By:
- Bumunang, Emmanuel;
- Garcia-Rodriguez, Vicky;
- Bukola, Rhoda;
- Castro, Vinicius Silva-;
- Zaheer, Rahat;
- McAllister, Tim A.;
- Stanford, Kim
Publication type:
Article
Effect of in-feed administration and withdrawal of tylosin phosphate on antibiotic resistance in enterococci isolated from feedlot steers.
Published in:
Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00483
By:
- Beukers, Alicia G.;
- Zaheer, Rahat;
- Cook, Shaun R.;
- Stanford, Kim;
- Chaves, Alexandre V.;
- Ward, Michael P.;
- McAllister, Tim A.
Publication type:
Article
Functional screening for triclosan resistance in a wastewater metagenome and isolates of Escherichia coli and Enterococcus spp. from a large Canadian healthcare region.
Published in:
PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0211144
By:
- Cameron, Andrew;
- Barbieri, Ruth;
- Read, Ron;
- Church, Deirdre;
- Adator, Emelia H.;
- Zaheer, Rahat;
- McAllister, Tim A.
Publication type:
Article
Competition among Escherichia coli Strains for Space and Resources.
Published in:
Veterinary Sciences, 2018, v. 5, n. 4, p. 1, doi. 10.3390/vetsci5040093
By:
- Paquette, Sarah-Jo;
- Zaheer, Rahat;
- Stanford, Kim;
- Thomas, James;
- Reuter, Tim
Publication type:
Article
Bacteriophages for the Targeted Control of Foodborne Pathogens.
Published in:
Foods, 2023, v. 12, n. 14, p. 2734, doi. 10.3390/foods12142734
By:
- Bumunang, Emmanuel W.;
- Zaheer, Rahat;
- Niu, Dongyan;
- Narvaez-Bravo, Claudia;
- Alexander, Trevor;
- McAllister, Tim A.;
- Stanford, Kim
Publication type:
Article

Found: 45