Works by ZHENG, CHUNFANG

Results: 54

Fractionation, rearrangement and subgenome dominance.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i402, doi. 10.1093/bioinformatics/bts392

By:

Sankoff, David;
Zheng, Chunfang

Publication type:

Article

Pathgroups, a dynamic data structure for genome reconstruction problems.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1587, doi. 10.1093/bioinformatics/btq255

By:

Chunfang Zheng

Publication type:

Article

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. i96, doi. 10.1093/bioinformatics/btn146

By:

Chunfang Zheng;
Qian Zhu;
Zaky Adam;
David Sankoff

Publication type:

Article

Polyploids, genome halving and phylogeny.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i433, doi. 10.1093/bioinformatics/btm169

By:

David Sankoff;
Chunfang Zheng;
Qian Zhu

Publication type:

Article

Identification and stage classification of Precambrian rifts in the Tarim craton, northwestern China.

Published in:

Arabian Journal of Geosciences, 2018, v. 11, n. 22, p. 1, doi. 10.1007/s12517-018-4085-2

By:

Zheng, Chunfang;
Hou, Guiting

Publication type:

Article

Serotonin Mitigates ColdStress-Induced Damage in Kandelia obovata Through Modulating the Endogenous Melatonin- and Abscisic Acid Biosynthesis.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 4, p. 1635, doi. 10.3390/ijms26041635

By:

Shan, Qiaobo;
Liu, Weicheng;
Ni, Xiaoxiao;
Li, Min;
Sun, Yifan;
Liao, Lixian;
Zheng, Chunfang

Publication type:

Article

A model for biased fractionation after whole genome duplication.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S8

By:

Sankoff, David;
Zheng, Chunfang;
Wang, Baoyong

Publication type:

Article

The collapse of gene complement following wholegenome duplication.

Published in:

BMC Genomics, 2010, v. 11, p. 313, doi. 10.1186/1471-2164-11-313

By:

Sankoff, David;
Chunfang Zheng;
Qian Zhu

Publication type:

Article

Reversal distance for partially ordered genomes.

Published in:

Bioinformatics, 2005, v. 21, p. i502, doi. 10.1093/bioinformatics/bti1037

By:

Zheng, Chunfang;
Lenert, Aleksander;
Sankoff, David

Publication type:

Article

Erratum to: Mechanisms on inhibition of photosynthesis in Kandelia obovata due to extreme cold events under climate change.

Published in:

2017

By:

Zheng, Chunfang;
Tang, Jianwu;
Chen, Jinong;
Liu, Weicheng;
Qiu, Jianbiao;
Peng, Xin;
Ye, Yong

Publication type:

Erratum

Erratum to: Mechanisms on inhibition of photosynthesis in Kandelia obovata due to extreme cold events under climate change.

Published in:

2017

By:

Zheng, Chunfang;
Tang, Jianwu;
Chen, Jinong;
Liu, Weicheng;
Qiu, Jianbiao;
Peng, Xin;
Ye, Yong

Publication type:

Erratum

Mechanisms on inhibition of photosynthesis in Kandelia obovata due to extreme cold events under climate change.

Published in:

Ecological Processes, 2016, v. 5, n. 1, p. 1, doi. 10.1186/s13717-016-0064-2

By:

Zheng, Chunfang;
Tang, Jianwu;
Chen, Jinong;
Liu, Weicheng;
Qiu, Jianbiao;
Peng, Xin;
Ye, Yong

Publication type:

Article

Recovery of photosynthesis, sucrose metabolism, and proteolytic enzymes in Kandelia obovata from rare cold events in the northernmost mangrove, China.

Published in:

Ecological Processes, 2016, v. 5, n. 1, p. 1, doi. 10.1186/s13717-016-0047-3

By:

Zheng, Chunfang;
Ye, Yong;
Liu, Weicheng;
Tang, Jianwu;
Zhang, Chengnian;
Qiu, Jianbiao;
Chen, Jinong

Publication type:

Article

Managing the Poverty–CO2 Reductions Paradox.

Published in:

Organization & Environment, 2015, v. 28, n. 4, p. 355, doi. 10.1177/1086026615623059

By:

Collins, Denis;
Zheng, Chunfang

Publication type:

Article

Ceramide Complex Ameliorates Metabolically Driven Neutrophil Senescence by Regulating Apoptosis via the cGAS-STING Pathway.

Published in:

International Journal of Medical Sciences, 2025, v. 22, n. 5, p. 1124, doi. 10.7150/ijms.104801

By:

Xi Gao;
Cheng Lu;
Kaixuan Wang;
Chunfang Zheng;
Linbin Li;
Xin Zhang;
Bingwei Sun

Publication type:

Article

Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S9

By:

Sankoff, David;
Chunfang Zheng;
Baoyong Wang;
Buen Abad Najar, Carlos Fernando

Publication type:

Article

The nuclear genome of Rhazya stricta and the evolution of alkaloid diversity in a medically relevant clade of Apocynaceae.

Published in:

Scientific Reports, 2016, p. 33782, doi. 10.1038/srep33782

By:

Sabir, Jamal S. M.;
Jansen, Robert K.;
Arasappan, Dhivya;
Calderon, Virginie;
Noutahi, Emmanuel;
Zheng, Chunfang;
Park, Seongjun;
Sabir, Meshaal J.;
Baeshen, Mohammed N.;
Hajrah, Nahid H.;
Khiyami, Mohammad A.;
Baeshen, Nabih A.;
Obaid, Abdullah Y.;
Al-Malki, Abdulrahman L.;
Sankoff, David;
El-Mabrouk, Nadia;
Ruhlman, Tracey A.

Publication type:

Article

Comprehensive comparative analysis and expression profiles and effects on physiological response of DEAD-box RNA helicase genes in Lumnitzera littorea (Jack) Voigt under cold stress.

Published in:

Journal of Plant Interactions, 2022, v. 17, n. 1, p. 595, doi. 10.1080/17429145.2022.2074158

By:

Hao, LuLu;
Zhang, Ying;
Li, Yin;
Bai, Linxia;
Yue, Danfei;
Zhang, Huiyu;
Zheng, Chunfang

Publication type:

Article

Comparative study of four different estuarine Coilia nasus populations in China.

Published in:

Marine Fisheries / Haiyang Yuye, 2025, v. 47, n. 1, p. 64

By:

AI Longwei;
YU Zhengsen;
ZHENG Chunfang;
QIN Song;
FAN Qingsong;
YE Shen;
FENG Guangpeng;
SUN Shuhao;
QIU Wenzhi;
LIU Weicheng

Publication type:

Article

Transcriptome analysis of Sonneratia caseolaris seedlings under chilling stress.

Published in:

PeerJ, 2021, p. 1, doi. 10.7717/peerj.11506

By:

Yong Yang;
Chunfang Zheng;
Cairong Zhong;
Tianxi Lu;
Juma Gul;
Xiang Jin;
Ying Zhang;
Qiang Liu

Publication type:

Article

Excision Dominates Pseudogenization During Fractionation After Whole Genome Duplication and in Gene Loss After Speciation in Plants.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.603056

By:

Yu, Zhe;
Zheng, Chunfang;
Albert, Victor A.;
Sankoff, David

Publication type:

Article

Comparative Transcriptome Reveals the Genes' Adaption to Herkogamy of Lumnitzera littorea (Jack) Voigt.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.584817

By:

Zhang, Ying;
Chen, Yukai;
Zhou, Yan;
Zhang, Jingwen;
Bai, He;
Zheng, Chunfang

Publication type:

Article

POLYPLOIDY AND ANGIOSPERM DIVERSIFICATION.

Published in:

American Journal of Botany, 2009, v. 96, n. 1, p. 336, doi. 10.3732/ajb.0800079

By:

Soltis, Douglas E.;
Albert, Victor A.;
Leebens-Mack, Jim;
Bell, Charles D.;
Paterson, Andrew H.;
Chunfang Zheng;
Sankoff, David;
dePamphilis, Claude W.;
Wall, P. Kerr;
Soltis, Pamela S.

Publication type:

Article

Evolution of the Nanhua-Sinian Rifts in the Tarim Block.

Published in:

Acta Geologica Sinica (English Edition), 2016, v. 90, p. 172, doi. 10.1111/1755-6724.12956

By:

ZHENG, Chunfang;
HOU, Guiting;
GUAN, Shuwei

Publication type:

Article

Locating rearrangement events in a phylogeny based on highly fragmented assemblies.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2294-6

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Syntenic block overlap multiplicities with a panel of reference genomes provide a signature of ancient polyploidization events.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S8

By:

Chunfang Zheng;
Muñoz, Daniella Santos;
Albert, Victor A.;
Sankoff, David

Publication type:

Article

Near-medians that avoid the corners; a combinatorial probability approach.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S1

By:

Larlee, Caroline Anne;
Chunfang Zheng;
Sankoff, David

Publication type:

Article

Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S6-S8

By:

Chunfang Zheng;
Kononenko, Alexey;
Leebens-Mack, Jim;
Lyons, Eric;
Sankoff, David

Publication type:

Article

Ancient eudicot hexaploidy meets ancestral eurosid gene order.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S7-S3

By:

Chunfang Zheng;
Eric Chen;
Albert, Victor A.;
Lyons, Eric;
Sankoff, David

Publication type:

Article

ECO-BUDGET APPLICATION ORIENTED BY ENVIRONMENTAL GOVERNANCE: EVIDENCE FROM BEIJING.

Published in:

Environmental Engineering & Management Journal (EEMJ), 2020, v. 19, n. 9, p. 1491

By:

Yanqiu Zhang;
Chunfang Zheng

Publication type:

Article

Ecophysiological Analysis of Mangrove Seedlings Kandelia obovata Exposed to Natural Low Temperature at Near 30°N.

Published in:

Journal of Marine Science & Engineering, 2019, v. 7, n. 9, p. 292, doi. 10.3390/jmse7090292

By:

Wang, Zhen;
Yu, Dongling;
Zheng, Chunfang;
Wang, Yaning;
Cai, Lu;
Guo, Jian;
Song, Wendong;
Ji, Lili

Publication type:

Article

Construction and multicohort validation of a colon cancer prognostic risk score system based on big data of neutrophil-associated differentially expressed genes.

Published in:

Journal of Cancer, 2024, v. 15, n. 9, p. 2866, doi. 10.7150/jca.94560

By:

Yunxi Yang;
Cheng Lu;
Linbin Li;
Chunfang Zheng;
Yifan Wang;
Jiahui Chen;
Bingwei Sun

Publication type:

Article

A branching process for homology distribution-based inference of polyploidy, speciation and loss.

Published in:

Algorithms for Molecular Biology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13015-019-0153-8

By:

Zhang, Yue;
Zheng, Chunfang;
Sankoff, David

Publication type:

Article

An injectable, activated neutrophil-derived exosome mimetics/extracellular matrix hybrid hydrogel with antibacterial activity and wound healing promotion effect for diabetic wound therapy.

Published in:

Journal of Nanobiotechnology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12951-023-02073-0

By:

Yu, Yanzhen;
Jin, Hangfei;
Li, Linbin;
Zhang, Xin;
Zheng, Chunfang;
Gao, Xi;
Yang, Yunxi;
Sun, Bingwei

Publication type:

Article

Genome-Wide Analysis of bHLH Family Genes and Identification of Members Associated with Cold/Drought-Induced Photoinhibition in Kandelia obovata.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 21, p. 15942, doi. 10.3390/ijms242115942

By:

Li, Junjian;
Chen, Siyi;
Yin, Yaxin;
Shan, Qiaobo;
Zheng, Chunfang;
Chen, Yan

Publication type:

Article

Quantitative Trait Locus Mapping of Marsh Spot Disease Resistance in Cranberry Common Bean (Phaseolus vulgaris L.).

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 14, p. 7639, doi. 10.3390/ijms23147639

By:

Jia, Bosen;
Conner, Robert L.;
Penner, Waldo C.;
Zheng, Chunfang;
Cloutier, Sylvie;
Hou, Anfu;
Xia, Xuhua;
You, Frank M.

Publication type:

Article

Insights into the Genetic Architecture and Genomic Prediction of Powdery Mildew Resistance in Flax (Linum usitatissimum L.).

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 4960, doi. 10.3390/ijms23094960

By:

You, Frank M.;
Rashid, Khalid Y.;
Zheng, Chunfang;
Khan, Nadeem;
Li, Pingchuan;
Xiao, Jin;
He, Liqiang;
Yao, Zhen;
Cloutier, Sylvie

Publication type:

Article

Genomic Prediction Accuracy of Seven Breeding Selection Traits Improved by QTL Identification in Flax.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 5, p. 1577, doi. 10.3390/ijms21051577

By:

Lan, Samuel;
Zheng, Chunfang;
Hauck, Kyle;
McCausland, Madison;
Duguid, Scott D.;
Booker, Helen M.;
Cloutier, Sylvie;
You, Frank M.

Publication type:

Article

The dynamics of functional classes of plant genes in rediploidized ancient polyploids.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S19

By:

Chen, Eric C. H.;
Buen Abad Najar, Carlos Fernando;
Chunfang Zheng;
Brandts, Alex;
Lyons, Eric;
Haibao Tang;
Carretero-Paulet, Lorenzo;
Albert, Victor A.;
Sankoff, David

Publication type:

Article

Practical aliquoting of flowering plant genomes.

Published in:

BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S8

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

A consolidation algorithm for genomes fractionated after higher order polyploidization.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S8

By:

Jahn, Katharina;
Chunfang Zheng;
Kováč, Jakub;
Sankoff, David

Publication type:

Article

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-13-S10-S9

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Fractionation statistics.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 9, p. 1, doi. 10.1186/1471-2105-12-S9-S5

By:

Baoyong Wang;
Chunfang Zheng;
Sankoff, David

Publication type:

Article

On the PATHGROUPS approach to rapid small phylogeny.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S4

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Scaffold filling, contig fusion and comparativegene order inference.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 304, doi. 10.1186/1471-2105-11-304

By:

Muñoz, Adriana;
Chunfang Zheng;
Qian Zhu;
Albert, Victor A.;
Rounsley, Steve;
Sankoff, David

Publication type:

Article

Multichromosomal median and halving problems under different genomic distances.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-120

By:

Tannier, Eric;
Chunfang Zheng;
Sankoff, David

Publication type:

Article

Genomic Analysis of the ASMT Gene Family in Solanum lycopersicum.

Published in:

Molecules, 2017, v. 22, n. 11, p. 1984, doi. 10.3390/molecules22111984

By:

Weicheng Liu;
Dake Zhao;
Chunfang Zheng;
Chen Chen;
Xin Peng;
Yuan Cheng;
Hongjian Wan

Publication type:

Article

Modelling the Coupled and Coordinated Development between China's Cross-border E-commerce Supply Chain and Economic System.

Published in:

Discrete Dynamics in Nature & Society, 2022, p. 1, doi. 10.1155/2022/9547413

By:

Li, Xinxin;
Zheng, Chunfang;
Wang, Tongtong

Publication type:

Article

From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33029-x

By:

Xu, Qiaoji;
Jin, Lingling;
Zheng, Chunfang;
Zhang, Xiaomeng;
Leebens-Mack, James;
Sankoff, David

Publication type:

Article

Resolution effects in reconstructing ancestral genomes.

Published in:

BMC Genomics, 2018, v. 19, p. 51, doi. 10.1186/s12864-018-4462-y

By:

Chunfang Zheng;
Yuji Jeong;
Turcotte, Madisyn Gabrielle;
Sankoff, David

Publication type:

Article