Works matching AU Yura, Kei

Results: 51

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones.

Published in:

PLoS Biology, 2004, v. 2, n. 6, p. 856, doi. 10.1371/journal.pbio.0020162

By:

Imanishi, Tadashi;
Itoh, Takeshi;
Suzuki, Yutaka;
O'donovan, Claire;
Fukuchi, Satoshi;
Koyanagi, Kanako O.;
Barrero, Roberto A.;
Tamura, Takuro;
Yamaguchi-kabata, Yumi;
Tanino, Motohiko;
Yura, Kei;
Miyazaki, Satoru;
Ikeo, Kazuho;
Homma, Keiichi;
Kasprzyk, Arek;
Nishikawa, Tetsuo;
Hirakawa, Mika;
Thierry-mieg, Jean;
Thierry-mieg, Danielle;
Ashurst, Jennifer

Publication type:

Article

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones.

Published in:

PLoS Biology, 2004, v. 2, n. 4, p. 1, doi. 10.1371/journal.pbio.0020162

By:

Imanishi, Tadashi;
Itoh, Takeshi;
Suzuki, Yutaka;
O'Donovan, Claire;
Fukuchi, Satoshi;
Koyanagi, Kanako O;
Barrero, Roberto A;
Tamura, Takuro;
Yamaguchi-Kabata, Yumi;
Tanino, Motohiko;
Yura, Kei;
Miyazaki, Satoru;
Ikeo, Kazuho;
Homma, Keiichi;
Kasprzyk, Arek;
Nishikawa, Tetsuo;
Hirakawa, Mika;
Thierry-Mieg, Jean;
Thierry-Mieg, Danielle;
Ashurst, Jennifer

Publication type:

Article

Complete mitochondrial genome sequences of two ground crickets, Dianemobius fascipes nigrofasciatus and Polionemobius taprobanensis (Orthoptera: Grylloidea: trigonidiidae).

Published in:

Mitochondrial DNA: Resources, 2023, v. 8, n. 12, p. 1311, doi. 10.1080/23802359.2023.2285400

By:

Murata, Kohyoh;
Kataoka, Kosuke;
Sanno, Ryuto;
Satomura, Kazuhiro;
Ogura, Atsushi;
Asahi, Toru;
Yura, Kei;
Suzuki, Takeshi

Publication type:

Article

Cephalopod eye evolution was modulated by the acquisition of Pax-6 splicing variants.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04256

By:

Yoshida, Masa-aki;
Yura, Kei;
Ogura, Atsushi

Publication type:

Article

The Draft Genome Dataset of the Asian Cricket Teleogryllus occipitalis for Molecular Research Toward Entomophagy.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00470

By:

Kataoka, Kosuke;
Minei, Ryuhei;
Ide, Keigo;
Ogura, Atsushi;
Takeyama, Haruko;
Takeda, Makio;
Suzuki, Takeshi;
Yura, Kei;
Asahi, Toru

Publication type:

Article

Author Correction: Exploration of natural red-shifted rhodopsins using a machine learning-based Bayesian experimental design.

Published in:

2021

By:

Inoue, Keiichi;
Karasuyama, Masayuki;
Nakamura, Ryoko;
Konno, Masae;
Yamada, Daichi;
Mannen, Kentaro;
Nagata, Takashi;
Inatsu, Yu;
Yawo, Hiromu;
Yura, Kei;
Béjà, Oded;
Kandori, Hideki;
Takeuchi, Ichiro

Publication type:

Correction Notice

Exploration of natural red-shifted rhodopsins using a machine learning-based Bayesian experimental design.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01878-9

By:

Inoue, Keiichi;
Karasuyama, Masayuki;
Nakamura, Ryoko;
Konno, Masae;
Yamada, Daichi;
Mannen, Kentaro;
Nagata, Takashi;
Inatsu, Yu;
Yawo, Hiromu;
Yura, Kei;
Béjà, Oded;
Kandori, Hideki;
Takeuchi, Ichiro

Publication type:

Article

coliSNP database server mapping nsSNPs on protein structures.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D409

By:

Kono, Hidetoshi;
Yuasa, Tomo;
Nishiue, Shinya;
Yura, Kei

Publication type:

Article

Amino acid residue doublet propensity in the protein–RNA interface and its application to RNA interface prediction.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 22, p. 6450, doi. 10.1093/nar/gkl819

By:

Kim, Oanh T. P.;
Yura, Kei;
Go, Nobuhiro

Publication type:

Article

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 14, p. 3917, doi. 10.1093/nar/gkl507

By:

Takeda, Jun-ichi;
Suzuki, Yutaka;
Nakao, Mitsuteru;
Barrero, Roberto A.;
Koyanagi, Kanako O.;
Jin, Lihua;
Motono, Chie;
Hata, Hiroko;
Isogai, Takao;
Nagai, Keiichi;
Otsuki, Tetsuji;
Kuryshev, Vladimir;
Shionyu, Masafumi;
Yura, Kei;
Go, Mitiko;
Thierry-Mieg, Jean;
Thierry-Mieg, Danielle;
Wiemann, Stefan;
Nomura, Nobuo;
Sugano, Sumio

Publication type:

Article

Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 463, doi. 10.1093/nar/gkg117

By:

Yamaguchi, Akihiro;
Iwadate, Mitsuo;
Suzuki, Ei-ichiro;
Yura, Kei;
Kawakita, Shigetsugu;
Umeyama, Hideaki;
Go, Mitiko

Publication type:

Article

Puromycin-based purification of cells with high expression of the cytochrome P450 CYP3A4 gene from a patient with drug-induced liver injury (DILI).

Published in:

Stem Cell Research & Therapy, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13287-021-02680-4

By:

Miyata, Shoko;
Saku, Noriaki;
Akiyama, Saeko;
Javaregowda, Palaksha Kanive;
Ite, Kenta;
Takashima, Nagisa;
Toyoda, Masashi;
Yura, Kei;
Kimura, Tohru;
Nishina, Hiroshi;
Nakazawa, Atsuko;
Kasahara, Mureo;
Nonaka, Hidenori;
Kiyono, Tohru;
Umezawa, Akihiro

Publication type:

Article

Het-PDB Navi.: A Database for Protein–Small Molecule Interactions.

Published in:

Journal of Biochemistry, 2004, v. 135, n. 1, p. 79, doi. 10.1093/jb/mvh009

By:

Yamaguchi, Akihiro;
Iida, Kei;
Matsui, Nobuaki;
Tomoda, Shirou;
Yura, Kei;
Go, Mitiko

Publication type:

Article

SAP130 and CSN1 interact and regulate male gametogenesis in Arabidopsis thaliana.

Published in:

Journal of Plant Research, 2021, v. 134, n. 2, p. 279, doi. 10.1007/s10265-021-01260-0

By:

Aki, Shiori S.;
Yura, Kei;
Aoyama, Takashi;
Tsuge, Tomohiko

Publication type:

Article

A novel circular ssDNA virus of the phylum Cressdnaviricota discovered in metagenomic data from otter clams (Lutraria rhynchaena).

Published in:

Archives of Virology, 2020, v. 165, n. 12, p. 2921, doi. 10.1007/s00705-020-04819-9

By:

Kim, Oanh T. P.;
Kagaya, Yuki;
Tran, Hoang S.;
Minei, Ryuhei;
Tran, Trang T. H.;
Duong, Ha T. T.;
Le, Binh T. N.;
Dang, Lua T.;
Kinoshita, Kengo;
Ogura, Atsushi;
Yura, Kei

Publication type:

Article

RESOPS: A Database for Analyzing the Correspondence of RNA Editing Sites to Protein Three-Dimensional Structures.

Published in:

Plant & Cell Physiology, 2009, v. 50, n. 11, p. 1865, doi. 10.1093/pcp/pcp132

By:

Yura, Kei;
Sulaiman, Sintawee;
Hatta, Yosuke;
Shionyu, Masafumi;
Go, Mitiko

Publication type:

Article

Mutational Analysis of Genes Involved in Pilus Structure, Motility and Transformation Competency in the Unicellular Motile CyanobacteriumSynechocystis sp. PCC 6803.

Published in:

Plant & Cell Physiology, 2001, v. 42, n. 1, p. 63, doi. 10.1093/pcp/pce007

By:

Yoshihara, Shizue;
Geng, Xiao Xing;
Okamoto, Shinobu;
Yura, Kei;
Murata, Takashi;
Go, Mitiko;
Ohmori, Masayuki;
Ikeuchi, Masahiko

Publication type:

Article

Chromosome-scale whole genome assembly and annotation of the Jamaican field cricket Gryllus assimilis.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05197-0

By:

Ito, Yuki;
Sanno, Ryuto;
Ashikari, Seiya;
Yura, Kei;
Asahi, Toru;
Ylla, Guillem;
Kataoka, Kosuke

Publication type:

Article

Comparative Analysis of Mitochondrial Genomes in Gryllidea (Insecta: Orthoptera): Implications for Adaptive Evolution in Ant-Loving Crickets.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab222

By:

Sanno, Ryuto;
Kataoka, Kosuke;
Hayakawa, Shota;
Ide, Keigo;
Nguyen, Chuong N;
Nguyen, Thao P;
Le, Binh T N;
Kim, Oanh T P;
Mineta, Katsuhiko;
Takeyama, Haruko;
Takeda, Makio;
Sato, Toshiyuki;
Suzuki, Takeshi;
Yura, Kei;
Asahi, Toru

Publication type:

Article

Highly Divergent Actins from Karyorelictean, Heterotrich, and Litostome Ciliates.

Published in:

Journal of Eukaryotic Microbiology, 2004, v. 51, n. 2, p. 227, doi. 10.1111/j.1550-7408.2004.tb00551.x

By:

Kim, Oanh T. P.;
Yura, Kei;
Go, Nobuhiro;
Harumoto, Terue

Publication type:

Article

Complete genome sequence of the mitochondrial DNA of the sparkling enope squid, Watasenia scintillans.

Published in:

Mitochondrial DNA. Part A, 2016, v. 27, n. 3, p. 1842, doi. 10.3109/19401736.2014.971251

By:

Hayashi, Keiko;
Kawai, Yuri L.;
Yura, Kei;
Yoshida, Masa-aki;
Ogura, Atsushi;
Hata, Kenichiro;
Nakabayashi, Kazuhiko;
Okamura, Kohji

Publication type:

Article

O3C Glass-Class: A Machine-Learning Framework for Prognostic Prediction of Ovarian Clear-Cell Carcinoma.

Published in:

Bioinformatics & Biology Insights, 2022, p. 1, doi. 10.1177/11779322221134312

By:

Yokomizo, Ryo;
Lopes, Tiago JS;
Takashima, Nagisa;
Hirose, Sou;
Kawabata, Ayako;
Takenaka, Masataka;
Iida, Yasushi;
Yanaihara, Nozomu;
Yura, Kei;
Sago, Haruhiko;
Okamoto, Aikou;
Umezawa, Akihiro

Publication type:

Article

O3C Glass-Class: A Machine-Learning Framework for Prognostic Prediction of Ovarian Clear-Cell Carcinoma.

Published in:

Bioinformatics & Biology Insights, 2022, v. 16, p. 1, doi. 10.1177/11779322221134312

By:

Ryo Yokomizo;
Lopes, Tiago J. S.;
Nagisa Takashima;
Sou Hirose;
Ayako Kawabata;
Masataka Takenaka;
Yasushi Iida;
Nozomu Yanaihara;
Kei Yura;
Haruhiko Sago;
Aikou Okamoto;
Akihiro Umezawa

Publication type:

Article

Module shuffling of a family F/10 xylanase: replacement of modules M4 and M5 of the FXYN of Streptomyces olivaceoviridis E-86 with those of the Cex of Cellulomonas fimi.

Published in:

Protein Engineering, 2000, v. 13, n. 12, p. 873, doi. 10.1093/protein/13.12.873

By:

Kaneko, Satoshi;
Iwamatsu, Shinnosuke;
Kuno, Atsushi;
Fujimoto, Zui;
Sato, Yoko;
Yura, Kei;
Go, Mitiko;
Mizuno, Hiroshi;
Taira, Kazunari;
Hasegawa, Tsunemi;
Kusakabe, Isao;
Hayashi, Kiyoshi

Publication type:

Article

Engineered Functional Recovery of Microbial Rhodopsin Without Retinal‐Binding Lysine.

Published in:

Photochemistry & Photobiology, 2019, v. 95, n. 5, p. 1116, doi. 10.1111/php.13114

By:

Yamauchi, Yumeka;
Konno, Masae;
Yamada, Daichi;
Yura, Kei;
Inoue, Keiichi;
Béjà, Oded;
Kandori, Hideki

Publication type:

Article

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 173, doi. 10.1002/pro.4211

By:

Bekker, Gert‐Jan;
Yokochi, Masashi;
Suzuki, Hirofumi;
Ikegawa, Yasuyo;
Iwata, Takeshi;
Kudou, Takahiro;
Yura, Kei;
Fujiwara, Toshimichi;
Kawabata, Takeshi;
Kurisu, Genji

Publication type:

Article

日本生物物理学会第50回年会報告日本生物物理学会若手奨励賞―第8回選考過程報告―

Published in:

Seibutsu Butsuri, 2012, v. 52, n. 6, p. 304

By:

Yura Kei

Publication type:

Article

Early Research in Biophysics Award--Report on the Seventh Award Nomination Process--.

Published in:

Seibutsu Butsuri, 2011, v. 51, n. 6, p. 286, doi. 10.2142/biophys.51.286

By:

YURA, Kei

Publication type:

Article

Birth of "Promenade along Protein 3D Structures".

Published in:

Seibutsu Butsuri, 2011, v. 51, n. 3, p. 144, doi. 10.2142/biophys.51.144

By:

YURA, Kei

Publication type:

Article

REFOLDdb: a new and sustainable gateway to experimental protocols for protein refolding.

Published in:

BMC Structural Biology, 2017, p. 1, doi. 10.1186/s12900-017-0074-z

By:

Hisashi Mizutani;
Hideaki Sugawara;
Buckle, Ashley M.;
Takeshi Sangawa;
Ken-ichi Miyazono;
Jun Ohtsuka;
Koji Nagata;
Tomoki Shojima;
Shohei Nosaki;
Yuqun Xu;
Delong Wang;
Xiao Hu;
Masaru Tanokura;
Kei Yura

Publication type:

Article

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles.

Published in:

BMC Plant Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2229-8-79

By:

Kei Yura;
Go, Mitiko

Publication type:

Article

The interwinding nature of protein–protein interfaces and its implication for protein complex formation.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3108, doi. 10.1093/bioinformatics/btp563

By:

Yura, Kei;
Steven, Hayward

Publication type:

Article

Co-expression network analysis of environmental canalization in the ascidian Ciona.

Published in:

BMC Ecology & Evolution, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12862-022-02006-9

By:

Sato, Atsuko;
Oba, Gina M.;
Aubert-Kato, Nathanael;
Yura, Kei;
Bishop, John

Publication type:

Article

CoDP: predicting the impact of unclassified genetic variants in MSH6 by the combination of different properties of the protein.

Published in:

Journal of Biomedical Science, 2013, v. 20, n. 1, p. 1, doi. 10.1186/1423-0127-20-25

By:

Hiroko Terui;
Kiwamu Akagi;
Hiroshi Kawame;
Kei Yura

Publication type:

Article

Novel types of two-domain multi-copper oxidases: possible missing links in the evolution

Published in:

FEBS Letters, 2003, v. 553, n. 3, p. 239, doi. 10.1016/S0014-5793(03)01000-7

By:

Nakamura, Kensuke;
Kawabata, Takeshi;
Yura, Kei;
Go, Nobuhiro

Publication type:

Article

Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1868, doi. 10.1002/prot.23011

By:

Hijikata, Atsushi;
Yura, Kei;
Noguti, Tosiyuki;
Go, Mitiko

Publication type:

Article

Multiple mutations in RNA polymerase β-subunit gene (rpoB) in Streptomyces incarnatus NRRL8089 enhance production of antiviral antibiotic sinefungin: modeling rif cluster region by density functional theory.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 5, p. 1275, doi. 10.1093/bbb/zbab011

By:

Ogawa, Saori;
Shimidzu, Hitomi;
Fukuda, Koji;
Tsunekawa, Naoki;
Hirano, Toshiyuki;
Sato, Fumitoshi;
Yura, Kei;
Hasunuma, Tomohisa;
Ochi, Kozo;
Yamamoto, Michio;
Sakamoto, Wataru;
Hashimoto, Kentaro;
Ogata, Hiroyuki;
Kanao, Tadayoshi;
Nemoto, Michiko;
Inagaki, Kenji;
Tamura, Takashi

Publication type:

Article

A Bicyclic 1-Deoxygalactonojirimycin Derivative as a Novel Pharmacological Chaperone for GM<sub>1</sub> Gangliosidosis.

Published in:

Molecular Therapy, 2013, v. 21, n. 3, p. 526, doi. 10.1038/mt.2012.263

By:

Takai, Tomoko;
Higaki, Katsumi;
Aguilar-Moncayo, Matilde;
Mena-Barragán, Teresa;
Hirano, Yuki;
Yura, Kei;
Yu, Liang;
Ninomiya, Haruaki;
García-Moreno, M. Isabel;
Sakakibara, Yasubumi;
Ohno, Kousaku;
Nanba, Eiji;
Ortiz Mellet, Carmen;
García Fernández, José M.;
Suzuki, Yoshiyuki

Publication type:

Article

Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01395-9

By:

Ide, Keigo;
Nishikawa, Yohei;
Maruyama, Toru;
Tsukada, Yuko;
Kogawa, Masato;
Takeda, Hiroki;
Ito, Haruka;
Wagatsuma, Ryota;
Miyaoka, Rimi;
Nakano, Yoshikatsu;
Kinjo, Koji;
Ito, Michihiro;
Hosokawa, Masahito;
Yura, Kei;
Suda, Shoichiro;
Takeyama, Haruko

Publication type:

Article

Distinct Conformation of ATP Molecule in Solution and on Protein.

Published in:

Biophysics (13492942), 2013, v. 9, p. 1, doi. 10.2142/biophysics.9.1

By:

Eri Kobayashi;
Kei Yura;
Yoshinori Nagai

Publication type:

Article

Characteristics and Prediction of RNA Editing Sites in Transcripts of the Moss Takakia lepidozioides Chloroplast.

Published in:

DNA Research, 2008, v. 15, n. 5, p. 309, doi. 10.1093/dnares/dsn016

By:

Yura, Kei;
Miyata, Yuki;
Arikawa, Tomotsugu;
Higuchi, Masanobu;
Sugita, Mamoru

Publication type:

Article

Putative Mechanism of Natural Transformation as Deduced from Genome Data.

Published in:

DNA Research, 1999, v. 6, n. 2, p. 75, doi. 10.1093/dnares/6.2.75

By:

Yura, Kei;
Toh, Hiroyuki;
G−o, Mitiko

Publication type:

Article

CFI 25 Subunit of Cleavage Factor I is Important for Maintaining the Diversity of 3ʹ UTR Lengths in Arabidopsis thaliana (L.) Heynh.

Published in:

Plant & Cell Physiology, 2022, v. 63, n. 3, p. 369, doi. 10.1093/pcp/pcac002

By:

Zhang, Xiaojuan;
Nomoto, Mika;
Garcia-León, Marta;
Takahashi, Naoki;
Kato, Mariko;
Yura, Kei;
Umeda, Masaaki;
Rubio, Vicente;
Tada, Yasuomi;
Furumoto, Tsuyoshi;
Aoyama, Takashi;
Tsuge, Tomohiko

Publication type:

Article

Regulatory properties of vitronectin and its glycosylation in collagen fibril formation and collagen-degrading enzyme cathepsin K activity.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91353-6

By:

Date, Kimie;
Sakagami, Hiromi;
Yura, Kei

Publication type:

Article

Diversification of CpG-Island Promoters Revealed by Comparative Analysis Between Human and Rhesus Monkey Genomes.

Published in:

Mammalian Genome, 2020, v. 31, n. 7/8, p. 240, doi. 10.1007/s00335-020-09844-2

By:

Aoto, Saki;
Fushimi, Mayu;
Yura, Kei;
Okamura, Kohji

Publication type:

Article

ADAMTS2 promotes radial migration by activating TGF-β signaling in the developing neocortex.

Published in:

EMBO Reports, 2024, v. 25, n. 7, p. 3090, doi. 10.1038/s44319-024-00174-x

By:

Kaneko, Noe;
Hirai, Kumiko;
Oshima, Minori;
Yura, Kei;
Hattori, Mitsuharu;
Maeda, Nobuaki;
Ohtaka-Maruyama, Chiaki

Publication type:

Article

Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans.

Published in:

Marine Biotechnology, 2020, v. 22, n. 6, p. 760, doi. 10.1007/s10126-020-10001-8

By:

Yoshida, Masa-aki;
Imoto, Junichi;
Kawai, Yuri;
Funahashi, Satomi;
Minei, Ryuhei;
Akizuki, Yuki;
Ogura, Atsushi;
Nakabayashi, Kazuhiko;
Yura, Kei;
Ikeo, Kazuho

Publication type:

Article

Computational study of the impact of nucleotide variations on highly conserved proteins: In the case of actin.

Published in:

Biophysics & Physicobiology, 2022, v. 19, p. 1, doi. 10.2142/biophysico.bppb-v19.0025

By:

Duong, Ha T. T.;
Hirofumi Suzuki;
Saki Katagiri;
Mayu Shibata;
Misae Arai;
Kei Yura

Publication type:

Article

Relationship between conformation shift and disease related variation sites in ATP-binding cassette transporter proteins.

Published in:

Biophysics & Physicobiology, 2019, v. 16, n. 1, p. 68, doi. 10.2142/biophysico.16.0_68

By:

Mika Sakamoto;
Hirofumi Suzuki;
Kei Yura

Publication type:

Article

iMusta4SLC: Database for the structural property and variations of solute carrier transporters.

Published in:

Biophysics & Physicobiology, 2018, v. 15, n. 1, p. 94, doi. 10.2142/biophysico.15.0_94

By:

Akiko Higuchi;
Naoki Nonaka;
Kei Yura

Publication type:

Article