Works matching AU Yuan, Daojun

Results: 45

Small RNA and degradóme sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 6, p. 1521, doi. 10.1093/jxb/ert013

By:

Xiyan Yang;
Lichen Wang;
Daojun Yuan;
Lindsey, Keith;
Xianlong Zhang

Publication type:

Article

Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry.

Published in:

Journal of Experimental Botany, 2011, v. 62, n. 15, p. 5607, doi. 10.1093/jxb/err245

By:

Xu, Li;
Zhu, Longfu;
Tu, Lili;
Liu, Linlin;
Yuan, Daojun;
Jin, Li;
Long, Lu;
Zhang, Xianlong

Publication type:

Article

Highly Efficient Genome Editing Using Geminivirus-Based CRISPR/Cas9 System in Cotton Plant.

Published in:

Cells (2073-4409), 2022, v. 11, n. 18, p. N.PAG, doi. 10.3390/cells11182902

By:

Li, Bo;
Fu, Chunyang;
Zhou, Jiawei;
Hui, Fengjiao;
Wang, Qiongqiong;
Wang, Fuqiu;
Wang, Guanying;
Xu, Zhongping;
Che, Lianlian;
Yuan, Daojun;
Wang, Yanqin;
Zhang, Xianlong;
Jin, Shuangxia

Publication type:

Article

Cotton Gh CKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase.

Published in:

Plant Journal, 2013, v. 75, n. 5, p. 823, doi. 10.1111/tpj.12245

By:

Min, Ling;
Zhu, Longfu;
Tu, Lili;
Deng, Fenglin;
Yuan, Daojun;
Zhang, Xianlong

Publication type:

Article

The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants.

Published in:

Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01541

By:

Udall, Joshua A.;
Long, Evan;
Ramaraj, Thiruvarangan;
Conover, Justin L.;
Yuan, Daojun;
Grover, Corrinne E.;
Gong, Lei;
Arick II, Mark A.;
Masonbrink, Rick E.;
Peterson, Daniel G.;
Wendel, Jonathan F.

Publication type:

Article

The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 11, p. 1, doi. 10.1093/g3journal/jkab319

By:

Grover, Corrinne E.;
Daojun Yuan;
Arick II, Mark A.;
Miller, Emma R.;
Guanjing Hu;
Peterson, Daniel G.;
Wendel, Jonathan F.;
Udall, Joshua A.

Publication type:

Article

The Gossypium stocksii genome as a novel resource for cotton improvement.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 7, p. 1, doi. 10.1093/g3journal/jkab125

By:

Grover, Corrinne E.;
Daojun Yuan;
Arick II, Mark A.;
Miller, Emma R.;
QGuanjing Hu;
Peterson, Daniel G.;
Wendel, Jonathan F.;
Udall, Joshua A.

Publication type:

Article

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 5, p. 1457, doi. 10.1534/g3.120.401050

By:

Grover, Corrinne E.;
Mengqiao Pan;
Daojun Yuan;
Arick, Mark A.;
Guanjing Hu;
Brase, Logan;
Stelly, David M.;
Zefu Lu;
Schmitz, Robert J.;
Peterson, Daniel G.;
Wendel, Jonathan F.;
Udall, Joshua A.

Publication type:

Article

Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.).

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 2, p. 731, doi. 10.1534/g3.119.400909

By:

Grover, Corrinne E.;
Mi-Jeong Yoo;
Meng Lin;
Murphy, Matthew D.;
Harker, David B.;
Byers, Robert L.;
Lipka, Alexander E.;
Guanjing Hu;
Daojun Yuan;
Conover, Justin L.;
Udall, Joshua A.;
Paterson, Andrew H.;
Gore, Michael A.;
Wendel, Jonathan F.

Publication type:

Article

De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri.

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3079, doi. 10.1534/g3.119.400392

By:

Udall, Joshua A.;
Long, Evan;
Hanson, Chris;
Yuan, Daojun;
Ramaraj, Thiruvarangan;
Conover, Justin L.;
Gong, Lei;
Arick, Mark A.;
Grover, Corrinne E.;
Peterson, Daniel G.;
Wendel, Jonathan F.

Publication type:

Article

Orchestration of plant development and defense by indirect crosstalk of salicylic acid and brassinosteorid signaling via transcription factor GhTINY2.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 13, p. 4721, doi. 10.1093/jxb/erab186

By:

Xiao, Shenghua;
Hu, Qin;
Zhang, Xiaojun;
Si, Huan;
Liu, Shiming;
Chen, Lin;
Chen, Kun;
Berne, Sabina;
Yuan, Daojun;
Lindsey, Keith;
Zhang, Xianlong;
Zhu, Longfu

Publication type:

Article

Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies.

Published in:

Journal of Experimental Botany, 2014, v. 65, n. 22, p. 6679, doi. 10.1093/jxb/eru393

By:

Xu, Lian;
Zhang, Wenwen;
He, Xin;
Liu, Min;
Zhang, Kun;
Shaban, Muhammad;
Sun, Longqing;
Zhu, Jiachen;
Luo, Yijing;
Yuan, Daojun;
Zhang, Xianlong;
Zhu, Longfu

Publication type:

Article

Dual Domestication, Diversity, and Differential Introgression in Old World Cotton Diploids.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 12, p. 1, doi. 10.1093/gbe/evac170

By:

Grover, Corrinne E;
Arick, Mark A;
Thrash, Adam;
Sharbrough, Joel;
Hu, Guanjing;
Yuan, Daojun;
Snodgrass, Samantha;
Miller, Emma R;
Ramaraj, Thiruvarangan;
Peterson, Daniel G;
Udall, Joshua A;
Wendel, Jonathan F

Publication type:

Article

Construction of an EST-SSR-based interspecific transcriptome linkage map of fibre development in cotton.

Published in:

Journal of Genetics, 2014, v. 93, n. 3, p. 689, doi. 10.1007/s12041-014-0425-5

By:

CHUANXIANG LIU;
DAOJUN YUAN;
ZHONGXU LIN

Publication type:

Article

Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP.

Published in:

Journal of Genetics, 2013, v. 92, n. 2, p. 175, doi. 10.1007/s12041-013-0238-y

By:

LIU, CHUANXIANG;
YUAN, DAOJUN;
ZHANG, XIANLONG;
LIN, ZHONGXU

Publication type:

Article

Identification and Functional Analysis of lncRNA by CRISPR/Cas9 During the Cotton Response to Sap-Sucking Insect Infestation.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.784511

By:

Zhang, Jie;
Li, Jianying;
Saeed, Sumbul;
Batchelor, William D.;
Alariqi, Muna;
Meng, Qingying;
Zhu, Fuhui;
Zou, Jiawei;
Xu, Zhongping;
Si, Huan;
Wang, Qiongqiong;
Zhang, Xianlong;
Zhu, Huaguo;
Jin, Shuangxia;
Yuan, Daojun

Publication type:

Article

Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton.

Published in:

BMC Plant Biology, 2012, v. 12, n. 1, p. 110, doi. 10.1186/1471-2229-12-110

By:

Xiyan Yang;
Xianlong Zhang;
Daojun Yuan;
Fangyan Jin;
Yunchao Zhang;
Jiao Xu

Publication type:

Article

Long noncoding RNAs and their proposed functions in fibre development of cotton ( Gossypium spp.).

Published in:

New Phytologist, 2015, v. 207, n. 4, p. 1181, doi. 10.1111/nph.13429

By:

Wang, Maojun;
Yuan, Daojun;
Tu, Lili;
Gao, Wenhui;
He, Yonghui;
Hu, Haiyan;
Wang, Pengcheng;
Liu, Nian;
Lindsey, Keith;
Zhang, Xianlong

Publication type:

Article

Cotton pan-genome retrieves the lost sequences and genes during domestication and selection.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02351-w

By:

Li, Jianying;
Yuan, Daojun;
Wang, Pengcheng;
Wang, Qiongqiong;
Sun, Mengling;
Liu, Zhenping;
Si, Huan;
Xu, Zhongping;
Ma, Yizan;
Zhang, Boyang;
Pei, Liuling;
Tu, Lili;
Zhu, Longfu;
Chen, Ling-Ling;
Lindsey, Keith;
Zhang, Xianlong;
Jin, Shuangxia;
Wang, Maojun

Publication type:

Article

Cotton cytochrome P450 CYP82D regulates systemic cell death by modulating the octadecanoid pathway.

Published in:

Nature Communications, 2014, v. 5, n. 11, p. 5372, doi. 10.1038/ncomms6372

By:

Sun, Longqing;
Zhu, Longfu;
Xu, Li;
Yuan, Daojun;
Min, Ling;
Zhang, Xianlong

Publication type:

Article

Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 9, p. 4067, doi. 10.1093/nar/gkw238

By:

Maojun Wang;
Pengcheng Wang;
Lili Tu;
Sitao Zhu;
Lin Zhang;
Zhonghua Li;
Qinghua Zhang;
Daojun Yuan;
Xianlong Zhang

Publication type:

Article

An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid 'Huaza Mian H318', as revealed by genome-wide gene expression analysis.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07580-8

By:

Ding, Yuanhao;
Zhang, Rui;
Zhu, Longfu;
Wang, Maojun;
Ma, Yizan;
Yuan, Daojun;
Liu, Nian;
Hu, Haiyan;
Min, Ling;
Zhang, Xianlong

Publication type:

Article

Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton.

Published in:

Advanced Science, 2021, v. 8, n. 10, p. 1, doi. 10.1002/advs.202003634

By:

Yuan, Daojun;
Grover, Corrinne E.;
Hu, Guanjing;
Pan, Mengqiao;
Miller, Emma R.;
Conover, Justin L.;
Hunt, Spencer P.;
Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton.

Published in:

Advanced Science, 2021, v. 8, n. 10, p. 1, doi. 10.1002/advs.202003634

By:

Yuan, Daojun;
Grover, Corrinne E.;
Hu, Guanjing;
Pan, Mengqiao;
Miller, Emma R.;
Conover, Justin L.;
Hunt, Spencer P.;
Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Gene Prioritization of Resistant Rice Gene against Xanthomas oryzae pv. oryzae by Using Text Mining Technologies.

Published in:

BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/853043

By:

Jingbo Xia;
Xing Zhang;
Daojun Yuan;
Lingling Chen;
Webster, Jonathan;
Alex Chengyu Fang

Publication type:

Article

Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88160-4

By:

Zhou, Jiawei;
Zhang, Shuo;
Wang, Jie;
Shen, Hongmei;
Ai, Bin;
Gao, Wei;
Zhang, Cuijun;
Fei, Qili;
Yuan, Daojun;
Wu, Zhiqiang;
Tembrock, Luke R.;
Li, Sen;
Gu, Cuihua;
Liao, Xuezhu

Publication type:

Article

The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol‐free cotton.

Published in:

Plant Biotechnology Journal, 2021, v. 19, n. 2, p. 221, doi. 10.1111/pbi.13470

By:

Li, Bo;
Liang, Sijia;
Alariqi, Muna;
Wang, Fuqiu;
Wang, Guanying;
Wang, Qiongqiong;
Xu, Zhongping;
Yu, Lu;
Naeem Zafar, Muhammad;
Sun, Lin;
Si, Huan;
Yuan, Daojun;
Guo, Weifeng;
Wang, Yanqin;
Lindsey, Keith;
Zhang, Xianlong;
Jin, Shuangxia

Publication type:

Article

Robust CRISPR/Cpf1 (Cas12a)‐mediated genome editing in allotetraploid cotton (Gossypium hirsutum).

Published in:

Plant Biotechnology Journal, 2019, v. 17, n. 10, p. 1862, doi. 10.1111/pbi.13147

By:

Li, Bo;
Rui, Hangping;
Li, Yajun;
Wang, Qiongqiong;
Alariqi, Muna;
Qin, Lei;
Sun, Lin;
Ding, Xiao;
Wang, Fuqiu;
Zou, Jiawei;
Wang, Yanqing;
Yuan, Daojun;
Zhang, Xianlong;
Jin, Shuangxia

Publication type:

Article

GbEXPATR, a species-specific expansin, enhances cotton fibre elongation through cell wall restructuring.

Published in:

Plant Biotechnology Journal, 2016, v. 14, n. 3, p. 951, doi. 10.1111/pbi.12450

By:

Li, Yang;
Tu, Lili;
Pettolino, Filomena A;
Ji, Shengmei;
Hao, Juan;
Yuan, Daojun;
Deng, Fenglin;
Tan, Jiafu;
Hu, Haiyan;
Wang, Qing;
Llewellyn, Danny J.;
Zhang, Xianlong

Publication type:

Article

Comparative transcriptome analysis between somatic embryos ( SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development.

Published in:

Plant Biotechnology Journal, 2014, v. 12, n. 2, p. 161, doi. 10.1111/pbi.12123

By:

Jin, Fangyan;
Hu, Lisong;
Yuan, Daojun;
Xu, Jiao;
Gao, Wenhui;
He, Liangrong;
Yang, Xiyan;
Zhang, Xianlong

Publication type:

Article

GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton.

Published in:

Plant Biotechnology Journal, 2011, v. 9, n. 9, p. 1038, doi. 10.1111/j.1467-7652.2011.00617.x

By:

Hu, Lisong;
Yang, Xiyan;
Yuan, Daojun;
Zeng, Fanchang;
Zhang, Xianlong

Publication type:

Article

A Comparative Genome Analysis of PME and PMEI Families Reveals the Evolution of Pectin Metabolism in Plant Cell Walls.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072082

By:

Wang, Maojun;
Yuan, Daojun;
Gao, Wenhui;
Li, Yang;
Tan, Jiafu;
Zhang, Xianlong

Publication type:

Article

Genetic Mapping and Characteristics of Genes Specifically or Preferentially Expressed during Fiber Development in Cotton.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054444

By:

Ximei Li;
Daojun Yuan;
Jinfa Zhang;
Zhongxu Lin;
Xianlong Zhang

Publication type:

Article

Generation, Annotation and Analysis of First Large-Scale Expressed Sequence Tags from Developing Fiber of Gossypium barbadense L.

Published in:

PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022758

By:

Daojun Yuan;
Lili Tu;
Xianlong Zhang

Publication type:

Article

Adoption of Artificial Intelligence and Its Impact on Competitive Advantage: Mediated by Knowledge Management.

Published in:

Journal of Information & Knowledge Management, 2025, v. 24, n. 2, p. 1, doi. 10.1142/S0219649225500030

By:

Yuan, Daojun;
Kim, Jung Kwan;
Gao, Cong

Publication type:

Article

Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution.

Published in:

BMC Plant Biology, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12870-023-04104-2

By:

Zhang, Shuo;
Wang, Jie;
He, Wenchuang;
Kan, Shenglong;
Liao, Xuezhu;
Jordan, David R.;
Mace, Emma S.;
Tao, Yongfu;
Cruickshank, Alan W.;
Klein, Robert;
Yuan, Daojun;
Tembrock, Luke R.;
Wu, Zhiqiang

Publication type:

Article

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres.

Published in:

Scientific Reports, 2015, v. 5, n. 1, p. 17662, doi. 10.1038/srep17662

By:

Yuan, Daojun;
Tang, Zhonghui;
Wang, Maojun;
Gao, Wenhui;
Tu, Lili;
Jin, Xin;
Chen, Lingling;
He, Yonghui;
Zhang, Lin;
Zhu, Longfu;
Li, Yang;
Liang, Qiqi;
Lin, Zhongxu;
Yang, Xiyan;
Liu, Nian;
Jin, Shuangxia;
Lei, Yang;
Ding, Yuanhao;
Li, Guoliang;
Ruan, Xiaoan

Publication type:

Article

Defective pollen wall contributes to male sterility in the male sterile line 1355A of cotton.

Published in:

Scientific Reports, 2015, p. 9608, doi. 10.1038/srep09608

By:

Wu, Yuanlong;
Min, Ling;
Wu, Zancheng;
Yang, Li;
Zhu, Longfu;
Yang, Xiyan;
Yuan, Daojun;
Guo, Xiaoping;
Zhang, Xianlong

Publication type:

Article

Unraveling cis and trans regulatory evolution during cotton domestication.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13386-w

By:

Bao, Ying;
Hu, Guanjing;
Grover, Corrinne E.;
Conover, Justin;
Yuan, Daojun;
Wendel, Jonathan F.

Publication type:

Article

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12607-6

By:

Hu, Lisong;
Xu, Zhongping;
Wang, Maojun;
Fan, Rui;
Yuan, Daojun;
Wu, Baoduo;
Wu, Huasong;
Qin, Xiaowei;
Yan, Lin;
Tan, Lehe;
Sim, Soonliang;
Li, Wen;
Saski, Christopher A;
Daniell, Henry;
Wendel, Jonathan F.;
Lindsey, Keith;
Zhang, Xianlong;
Hao, Chaoyun;
Jin, Shuangxia

Publication type:

Article

Author Correction: Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem.

Published in:

2023

By:

Zhu, Xiangqian;
Xu, Zhongping;
Wang, Guanying;
Cong, Yulong;
Yu, Lu;
Jia, Ruoyu;
Qin, Yuan;
Zhang, Guangyu;
Li, Bo;
Yuan, Daojun;
Tu, Lili;
Yang, Xiyan;
Lindsey, Keith;
Zhang, Xianlong;
Jin, Shuangxia

Publication type:

Correction Notice

Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03032-6

By:

Zhu, Xiangqian;
Xu, Zhongping;
Wang, Guanying;
Cong, Yulong;
Yu, Lu;
Jia, Ruoyu;
Qin, Yuan;
Zhang, Guangyu;
Li, Bo;
Yuan, Daojun;
Tu, Lili;
Yang, Xiyan;
Lindsey, Keith;
Zhang, Xianlong;
Jin, Shuangxia

Publication type:

Article

Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP.

Published in:

Genome, 2012, v. 55, n. 6, p. 459, doi. 10.1139/g2012-032

By:

Li, Ximei;
Yuan, Daojun;
Wang, Hantao;
Chen, Xuemei;
Wang, Bin;
Lin, Zhongxu;
Zhang, Xianlong;
Somers, D.

Publication type:

Article

The chromosome-scale reference genome of mirid bugs (Adelphocorissuturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation.

Published in:

BMC Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12915-023-01666-3

By:

Xu, Zhongping;
Wang, Guanying;
Luo, Jing;
Zhu, Mingju;
Hu, Lisong;
Liang, Sijia;
Li, Bo;
Huang, Xingxing;
Wang, Ying;
Zhang, Guangyu;
Zhang, Can;
Zhou, Yi;
Yuan, Daojun;
Chen, Taiyu;
Chen, Lizhen;
Ma, Weihua;
Gao, Wei;
Lindsey, Keith;
Zhang, Xianlong;
Ding, Fang

Publication type:

Article

Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC<sub>1</sub> population between gossypium hirsutum and G. barbadense.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-15

By:

Yu Yu;
Daojun Yuan;
Shaoguang Liang;
Ximei Li;
Xiaqing Wang;
Zhongxu Lin;
Xianlong Zhang

Publication type:

Article