Works by Yu, Douglas W.

Results: 75

A Role for Parasites in Stabilising the Fig-Pollinator Mutualism.

Published in:

PLoS Biology, 2008, v. 6, n. 3, p. e59, doi. 10.1371/journal.pbio.0060059

By:

Dunn, Derek W;
Segar, Simon T;
Ridley, Jo;
Chan, Ruth;
Crozier, Ross H;
Yu, Douglas W;
Cook, James M

Publication type:

Article

Tolerating castration by hiding flowers in plain sight.

Published in:

Behavioral Ecology & Sociobiology, 2008, v. 63, n. 1, p. 95, doi. 10.1007/s00265-008-0639-8

By:

P.Edwards, David;
Yu, Douglas W.

Publication type:

Article

Closing the ecotourism-conservation loop in the Peruvian Amazon.

Published in:

Environmental Conservation, 2011, v. 38, n. 1, p. 6, doi. 10.1017/S0376892911000099

By:

KIRKBY, CHRISTOPHER A.;
GIUDICE, RENZO;
DAY, BRETT;
TURNER, KERRY;
SOARES-FILHO, BRITALDO SILVEIRA;
OLIVEIRA-RODRIGUES, HERMANN;
YU, DOUGLAS W.

Publication type:

Article

Indigenous ecotourism in the Amazon: a case study of ‘Casa Matsiguenka’ in Manu National Park, Peru.

Published in:

Environmental Conservation, 2008, v. 35, n. 1, p. 14, doi. 10.1017/S0376892908004517

By:

OHL-SCHACHERER, JULIA;
MANNIGEL, ELKE;
KIRKBY, CHRIS;
SHEPARD, GLENN H.;
YU, DOUGLAS W.

Publication type:

Article

An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies.

Published in:

GigaScience, 2019, v. 8, n. 4, p. N.PAG, doi. 10.1093/gigascience/giz029

By:

Axtner, Jan;
Crampton-Platt, Alex;
Hörig, Lisa A;
Mohamed, Azlan;
Xu, Charles C Y;
Yu, Douglas W;
Wilting, Andreas

Publication type:

Article

Mitochondrial metagenomics: letting the genes out of the bottle.

Published in:

GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0120-y

By:

Crampton-Platt, Alex;
Yu, Douglas W.;
Xin Zhou;
Vogler, Alfried P.

Publication type:

Article

Biodiversity Soup II: A bulk‐sample metabarcoding pipeline emphasizing error reduction.

Published in:

Methods in Ecology & Evolution, 2021, v. 12, n. 7, p. 1252, doi. 10.1111/2041-210X.13602

By:

Yang, Chunyan;
Bohmann, Kristine;
Wang, Xiaoyang;
Cai, Wang;
Wales, Nathan;
Ding, Zhaoli;
Gopalakrishnan, Shyam;
Yu, Douglas W.

Publication type:

Article

Bloodlines: mammals, leeches, and conservation in southern Asia.

Published in:

Systematics & Biodiversity, 2018, v. 16, n. 5, p. 488, doi. 10.1080/14772000.2018.1433729

By:

Tessler, Michael;
Weiskopf, Sarah R.;
Berniker, Lily;
Hersch, Rebecca;
Mccarthy, Kyle P.;
Yu, Douglas W.;
Siddall, Mark E.

Publication type:

Article

Seeking evidence of God's work undermines faith.

Published in:

2005

By:

Yu, Douglas W.

Publication type:

Letter

Measuring protected-area effectiveness using vertebrate distributions from leech iDNA.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28778-8

By:

Ji, Yinqiu;
Baker, Christopher C. M.;
Popescu, Viorel D.;
Wang, Jiaxin;
Wu, Chunying;
Wang, Zhengyang;
Li, Yuanheng;
Wang, Lin;
Hua, Chaolang;
Yang, Zhongxing;
Yang, Chunyan;
Xu, Charles C. Y.;
Diana, Alex;
Wen, Qingzhong;
Pierce, Naomi E.;
Yu, Douglas W.

Publication type:

Article

Experimental demonstration of species coexistence enabled by dispersal limitation.

Published in:

Journal of Animal Ecology, 2004, v. 73, n. 6, p. 1102, doi. 10.1111/j.0021-8790.2004.00877.x

By:

Yu, Douglas W.;
Wilson, Howard B.;
Frederickson, Megan E.;
Palomino, Wily;
De La Colina, Rafael;
Edwards, David P.;
Balareso, Angel A.

Publication type:

Article

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool -- prospects, pitfalls and avenues to be developed.

Published in:

Frontiers in Zoology, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12983-015-0115-z

By:

Bærholm Schnell, Ida;
Sollmann, Rahel;
Calvignac-Spencer, Sébastien;
Siddall, Mark E.;
Yu, Douglas W.;
Wilting, Andreas;
Gilbert, M. Thomas. P.

Publication type:

Article

Why long-lived species are more likely to be social: the role of local dominance.

Published in:

Behavioral Ecology, 2005, v. 16, n. 2, p. 358, doi. 10.1093/beheco/arh170

By:

Jo Ridley;
Douglas W. Yu;
William J. Sutherland

Publication type:

Article

Phylogenetic diversity only weakly mitigates climate‐change‐driven biodiversity loss in insect communities.

Published in:

Molecular Ecology, 2023, v. 32, n. 23, p. 6147, doi. 10.1111/mec.16747

By:

Li, Zongxu;
Linard, Benjamin;
Vogler, Alfried P.;
Yu, Douglas W.;
Wang, Zhengyang

Publication type:

Article

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis.

Published in:

Molecular Ecology, 2021, v. 30, n. 5, p. 1120, doi. 10.1111/mec.15797

By:

Arribas, Paula;
Andújar, Carmelo;
Bidartondo, Martin I.;
Bohmann, Kristine;
Coissac, Éric;
Creer, Simon;
deWaard, Jeremy R.;
Elbrecht, Vasco;
Ficetola, Gentile F.;
Goberna, Marta;
Kennedy, Susan;
Krehenwinkel, Henrik;
Leese, Florian;
Novotny, Vojtech;
Ronquist, Fredrik;
Yu, Douglas W.;
Zinger, Lucie;
Creedy, Thomas J.;
Meramveliotakis, Emmanouil;
Noguerales, Víctor

Publication type:

Article

Experimental studies of species-specificity in Cecropia-Ant relationships.

Published in:

Ecological Monographs, 1997, v. 67, n. 3, p. 273, doi. 10.2307/2963456

By:

Yu, Douglas W.;
Davidson, Diane W.

Publication type:

Article

Measuring the discrepancy between fecundity and lifetime reproductive success in a pollinating fig wasp.

Published in:

Entomologia Experimentalis et Applicata, 2011, v. 140, n. 3, p. 218, doi. 10.1111/j.1570-7458.2011.01151.x

By:

Dunn, Derek W.;
Jansen-González, Sergio;
Cook, James M.;
Yu, Douglas W.;
Pereira, Rodrigo A. S.

Publication type:

Article

Climate-induced forest dieback drives compositional changes in insect communities that are more pronounced for rare species.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-021-02968-4

By:

Sire, Lucas;
Yáñez, Paul Schmidt;
Wang, Cai;
Bézier, Annie;
Courtial, Béatrice;
Cours, Jérémy;
Fontaneto, Diego;
Larrieu, Laurent;
Bouget, Christophe;
Thorn, Simon;
Müller, Jörg;
Yu, Douglas W.;
Monaghan, Michael T.;
Herniou, Elisabeth A.;
Lopez-Vaamonde, Carlos

Publication type:

Article

The roles of sensory traps in the origin, maintenance, and breakdown of mutualism.

Published in:

Behavioral Ecology & Sociobiology, 2007, v. 61, n. 9, p. 1321, doi. 10.1007/s00265-007-0369-3

By:

Edwards, David P.;
Yu, Douglas W.

Publication type:

Article

Ethnobotanical ground-truthing: indigenous knowledge, floristic inventories and satellite imagery in the upper Rio Negro, Brazil.

Published in:

Journal of Biogeography, 2008, v. 35, n. 12, p. 2237, doi. 10.1111/j.1365-2699.2008.01975.x

By:

Abraão, Marcia Barbosa;
Nelson, Bruce W.;
Baniwa, João Cláudio;
Yu, Douglas W.;
Shepard Jr, Glenn H.

Publication type:

Article

Genome Analysis of Two Pseudonocardia Phylotypes Associated with Acromyrmex Leafcutter Ants Reveals Their Biosynthetic Potential.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02073

By:

Holmes, Neil A.;
Innocent, Tabitha M.;
Heine, Daniel;
Al Bassam, Mahmoud;
Worsley, Sarah F.;
Trottmann, Felix;
Patrick, Elaine H.;
Yu, Douglas W.;
Murrell, J. C.;
Schiøtt, Morten;
Wilkinson, Barrie;
Boomsma, Jacobus J.;
Hutchings, Matthew I.

Publication type:

Article

A mutualistic microbiome.

Published in:

Communicative & Integrative Biology, 2011, v. 4, n. 1, p. 41, doi. 10.4161/cib.13552

By:

Barke, Jörg;
Seipke, Ryan F.;
Yu, Douglas W.;
Hutchings, Matthew I.

Publication type:

Article

Using eDNA to detect the distribution and density of invasive crayfish in the Honghe-Hani rice terrace World Heritage site.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177724

By:

Cai, Wang;
Ma, Zhuxin;
Yang, Chunyan;
Wang, Lin;
Wang, Wenzhi;
Zhao, Guigang;
Geng, Yupeng;
Yu, Douglas W.

Publication type:

Article

Competition-based screening helps to secure the evolutionary stability of a defensive microbiome.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01142-w

By:

Worsley, Sarah F.;
Innocent, Tabitha M.;
Holmes, Neil A.;
Al-Bassam, Mahmoud M.;
Schiøtt, Morten;
Wilkinson, Barrie;
Murrell, J. Colin;
Boomsma, Jacobus J.;
Yu, Douglas W.;
Hutchings, Matthew I.

Publication type:

Article

Effectiveness of China's nature reserves in representing ecological diversity.

Published in:

Frontiers in Ecology & the Environment, 2011, v. 9, n. 7, p. 383, doi. 10.1890/100093

By:

Ruidong Wu;
Shuang Zhang;
Yu, Douglas W.;
Peng Zhao;
Xinhai Li;
Longzhu Wang;
Qian Yu;
Jian Ma;
Ai Chen;
Yongcheng Long

Publication type:

Article

Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet).

Published in:

Methods in Ecology & Evolution, 2019, v. 10, n. 10, p. 1690, doi. 10.1111/2041-210X.13265

By:

Peel, Ned;
Dicks, Lynn V.;
Clark, Matthew D.;
Heavens, Darren;
Percival‐Alwyn, Lawrence;
Cooper, Chris;
Davies, Richard G.;
Leggett, Richard M.;
Yu, Douglas W.;
Freckleton, Robert

Publication type:

Article

Quantifying uncertainty of taxonomic placement in DNA barcoding and metabarcoding.

Published in:

Methods in Ecology & Evolution, 2017, v. 8, n. 4, p. 398, doi. 10.1111/2041-210X.12721

By:

Somervuo, Panu;
Yu, Douglas W.;
Xu, Charles C.Y.;
Ji, Yinqiu;
Hultman, Jenni;
Wirta, Helena;
Ovaskainen, Otso;
Warton, David

Publication type:

Article

High-throughput monitoring of wild bee diversity and abundance via mitogenomics.

Published in:

Methods in Ecology & Evolution, 2015, v. 6, n. 9, p. 1034, doi. 10.1111/2041-210X.12416

By:

Tang, Min;
Hardman, Chloe J.;
Ji, Yinqiu;
Meng, Guanliang;
Liu, Shanlin;
Tan, Meihua;
Yang, Shenzhou;
Moss, Ellen D.;
Wang, Jiaxin;
Yang, Chenxue;
Bruce, Catharine;
Nevard, Tim;
Potts, Simon G.;
Zhou, Xin;
Yu, Douglas W.;
Gilbert, M.

Publication type:

Article

SOAP Barcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons.

Published in:

Methods in Ecology & Evolution, 2013, v. 4, n. 12, p. 1142, doi. 10.1111/2041-210X.12120

By:

Liu, Shanlin;
Li, Yiyuan;
Lu, Jianliang;
Su, Xu;
Tang, Min;
Zhang, Rui;
Zhou, Lili;
Zhou, Chengran;
Yang, Qing;
Ji, Yinqiu;
Yu, Douglas W.;
Zhou, Xin;
Orme, David

Publication type:

Article

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring.

Published in:

Methods in Ecology & Evolution, 2012, v. 3, n. 4, p. 613, doi. 10.1111/j.2041-210X.2012.00198.x

By:

Yu, Douglas W.;
Ji, Yinqiu;
Emerson, Brent C.;
Wang, Xiaoyang;
Ye, Chengxi;
Yang, Chunyan;
Ding, Zhaoli

Publication type:

Article

Parasites of mutualisms.

Published in:

Biological Journal of the Linnean Society, 2001, v. 72, n. 4, p. 529, doi. 10.1111/j.1095-8312.2001.tb01336.x

By:

YU, DOUGLAS W.

Publication type:

Article

Selective-logging and oil palm: multitaxon impacts, biodiversity indicators, and trade-offs for conservation planning.

Published in:

Ecological Applications, 2014, v. 24, n. 8, p. 2029, doi. 10.1890/14-0010.1

By:

Edwards, David P.;
Magrach, Ainhoa;
Woodcock, Paul;
Ji, Yinqiu;
Lim, Norman T.-L.;
Edwards, Felicity A.;
Larsen, Trond H.;
Hsu, Wayne W.;
Benedick, Suzan;
Khen, Chey Vun;
Chung, Arthur Y. C.;
Reynolds, Glen;
Fisher, Brendan;
Laurance, William F.;
Wilcove, David S.;
Hamer, Keith C.;
Yu, Douglas W.

Publication type:

Article

Opportunities for biodiversity gains under the world's largest reforestation programme.

Published in:

Nature Communications, 2016, v. 7, n. 9, p. 12717, doi. 10.1038/ncomms12717

By:

Hua, Fangyuan;
Wang, Xiaoyang;
Zheng, Xinlei;
Fisher, Brendan;
Wang, Lin;
Zhu, Jianguo;
Tang, Ya;
Yu, Douglas W.;
Wilcove, David S.

Publication type:

Article

Extracting abundance information from DNA‐based data.

Published in:

Molecular Ecology Resources, 2023, v. 23, n. 1, p. 174, doi. 10.1111/1755-0998.13703

By:

Luo, Mingjie;
Ji, Yinqiu;
Warton, David;
Yu, Douglas W.

Publication type:

Article

Strategies for sample labelling and library preparation in DNA metabarcoding studies.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1231, doi. 10.1111/1755-0998.13512

By:

Bohmann, Kristine;
Elbrecht, Vasco;
Carøe, Christian;
Bista, Iliana;
Leese, Florian;
Bunce, Michael;
Yu, Douglas W.;
Seymour, Mathew;
Dumbrell, Alex J.;
Creer, Simon

Publication type:

Article

Environmental DNA facilitates accurate, inexpensive, and multiyear population estimates of millions of anadromous fish.

Published in:

Molecular Ecology Resources, 2020, v. 20, n. 2, p. 457, doi. 10.1111/1755-0998.13123

By:

Pochardt, Meredith;
Allen, Jennifer M.;
Hart, Ted;
Miller, Sophie D. L.;
Yu, Douglas W.;
Levi, Taal

Publication type:

Article

SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes.

Published in:

Molecular Ecology Resources, 2020, v. 20, n. 1, p. 256, doi. 10.1111/1755-0998.13057

By:

Ji, Yinqiu;
Huotari, Tea;
Roslin, Tomas;
Schmidt, Niels Martin;
Wang, Jiaxin;
Yu, Douglas W.;
Ovaskainen, Otso

Publication type:

Article

Environmental DNA for the enumeration and management of Pacific salmon.

Published in:

Molecular Ecology Resources, 2019, v. 19, n. 3, p. 597, doi. 10.1111/1755-0998.12987

By:

Levi, Taal;
Allen, Jennifer M.;
Bell, Donovan;
Joyce, John;
Russell, Joshua R.;
Tallmon, David A.;
Vulstek, Scott C.;
Yang, Chunyan;
Yu, Douglas W.

Publication type:

Article

Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: Evidence from a known tropical mammal community.

Published in:

Molecular Ecology Resources, 2017, v. 17, n. 6, p. e133, doi. 10.1111/1755-0998.12701

By:

Rodgers, Torrey W.;
Xu, Charles C. Y.;
Giacalone, Jacalyn;
Kapheim, Karen M.;
Saltonstall, Kristin;
Vargas, Marta;
Yu, Douglas W.;
Somervuo, Panu;
McMillan, W. Owen;
Jansen, Patrick A.

Publication type:

Article

Exploiting sparseness in de novo genome assembly.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-13-S6-S1

By:

Ye, Chengxi;
Ma, Zhanshan Sam;
Cannon, Charles H.;
Pop, Mihai;
Yu, Douglas W.

Publication type:

Article

Evidence that the Tibetan fox is an obligate predator of the plateau pika: conservation implications.

Published in:

Journal of Mammalogy, 2014, v. 95, n. 6, p. 1207, doi. 10.1644/14-MAMM-A-021

By:

Harris, Richard B.;
Jiake, Zhou;
Yinqiu, Ji;
Kai, Zhang;
Chunyan, Yang;
Yu, Douglas W.

Publication type:

Article

Why the COI barcode should be the community DNA metabarcode for the metazoa.

Published in:

Molecular Ecology, 2018, v. 27, n. 20, p. 3968, doi. 10.1111/mec.14844

By:

Andújar, Carmelo;
Arribas, Paula;
Yu, Douglas W.;
Vogler, Alfried P.;
Emerson, Brent C.

Publication type:

Article

Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill.

Published in:

Molecular Ecology, 2018, v. 27, n. 1, p. 146, doi. 10.1111/mec.14410

By:

Andújar, Carmelo;
Arribas, Paula;
Gray, Clare;
Bruce, Catherine;
Woodward, Guy;
Yu, Douglas W.;
Vogler, Alfried P.

Publication type:

Article

Plant diversity accurately predicts insect diversity in two tropical landscapes.

Published in:

Molecular Ecology, 2016, v. 25, n. 17, p. 4407, doi. 10.1111/mec.13770

By:

Zhang, Kai;
Lin, Siliang;
Ji, Yinqiu;
Yang, Chenxue;
Wang, Xiaoyang;
Yang, Chunyan;
Wang, Hesheng;
Jiang, Haisheng;
Harrison, Rhett D.;
Yu, Douglas W.

Publication type:

Article

The genetic basis of a social polymorphism in halictid bees.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06824-8

By:

Kocher, Sarah D.;
Mallarino, Ricardo;
Rubin, Benjamin E. R.;
Yu, Douglas W.;
Hoekstra, Hopi E.;
Pierce, Naomi E.

Publication type:

Article

Chemical warfare between leafcutter ant symbionts and a co-evolved pathogen.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04520-1

By:

Heine, Daniel;
Holmes, Neil A.;
Worsley, Sarah F.;
Santos, Ana Carolina A.;
Innocent, Tabitha M.;
Scherlach, Kirstin;
Patrick, Elaine H.;
Yu, Douglas W.;
Murrell, J. Colin;
Vieria, Paulo C.;
Boomsma, Jacobus J.;
Hertweck, Christian;
Hutchings, Matthew I.;
Wilkinson, Barrie

Publication type:

Article

The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes.

Published in:

Genome Biology, 2013, v. 14, n. 12, p. 265, doi. 10.1186/gb-2013-14-12-r142

By:

Kocher, Sarah D.;
Cai Li;
Wei Yang;
Hao Tan;
Soojin V Yi;
Xingyu Yang;
Hoekstra, Hopi E.;
Guojie Zhang;
Pierce, Naomi E;
Yu, Douglas W

Publication type:

Article

Longevity, early emergence and body size in a pollinating fig wasp – implications for stability in a fig–pollinator mutualism.

Published in:

Journal of Animal Ecology, 2008, v. 77, n. 5, p. 927, doi. 10.1111/j.1365-2656.2008.01416.x

By:

Dunn, Derek W.;
Yu, Douglas W.;
Ridley, Jo;
Cook, James M.

Publication type:

Article

Conservation in Low-Governance Environments.

Published in:

Biotropica, 2010, v. 42, n. 5, p. 569, doi. 10.1111/j.1744-7429.2010.00680.x

By:

Yu, Douglas W.;
Levi, Taal;
Shepard, Glenn H.

Publication type:

Article

Game Vertebrate Densities in Hunted and Nonhunted Forest Sites in Manu National Park, Peru.

Published in:

Biotropica, 2010, v. 42, n. 2, p. 251, doi. 10.1111/j.1744-7429.2009.00546.x

By:

Endo, Whaldener;
Peres, Carlos A.;
Salas, Edith;
Mori, Sandra;
Sanchez-Vega, Jose-Luis;
Shepard, Glenn H.;
Pacheco, Victor;
Yu, Douglas W.

Publication type:

Article