Works by York, William

Results: 40

GlyGen: Computational and Informatics Resources for Glycoscience.

Published in:

Glycobiology, 2020, v. 30, n. 2, p. 72, doi. 10.1093/glycob/cwz080

By:

York, William S;
Mazumder, Raja;
Ranzinger, Rene;
Edwards, Nathan;
Kahsay, Robel;
Aoki-Kinoshita, Kiyoko F;
Campbell, Matthew P;
Cummings, Richard D;
Feizi, Ten;
Martin, Maria;
Natale, Darren A;
Packer, Nicolle H;
Woods, Robert J;
Agarwal, Gaurav;
Arpinar, Sena;
Bhat, Sanath;
Blake, Judith;
Castro, Leyla Jael Garcia;
Fochtman, Brian;
Gildersleeve, Jeffrey

Publication type:

Article

The GlySpace Alliance: toward a collaborative global glycoinformatics community.

Published in:

Glycobiology, 2020, v. 30, n. 2, p. 70, doi. 10.1093/glycob/cwz078

By:

Aoki-Kinoshita, Kiyoko F;
Lisacek, Frederique;
Mazumder, Raja;
York, William S;
Packer, Nicolle H

Publication type:

Article

GRITS Toolbox—a freely available software for processing, annotating and archiving glycomics mass spectrometry data.

Published in:

Glycobiology, 2019, v. 29, n. 6, p. 452, doi. 10.1093/glycob/cwz023

By:

Weatherly, D Brent;
Arpinar, F Sena;
Porterfield, Melody;
Tiemeyer, Michael;
York, William S;
Ranzinger, Rene

Publication type:

Article

The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

Published in:

Glycobiology, 2019, v. 29, n. 5, p. 349, doi. 10.1093/glycob/cwz009

By:

Campbell, Matthew P;
Abrahams, Jodie L;
Rapp, Erdmann;
Struwe, Weston B;
Costello, Catherine E;
Novotny, Milos;
Ranzinger, Rene;
York, William S;
Kolarich, Daniel;
Rudd, Pauline M;
Kettner, Carsten

Publication type:

Article

GlyTouCan: an accessible glycan structure repository.

Published in:

Glycobiology, 2017, v. 27, n. 10, p. 915, doi. 10.1093/glycob/cwx066

By:

Tiemeyer, Michael;
Kazuhiro Aoki;
Paulson, James;
Cummings, Richard D.;
York, William S.;
Karlsson, Niclas G.;
Lisacek, Frederique;
Packer, Nicolle H.;
Campbell, Matthew P.;
Aoki, Nobuyuki P.;
Akihiro Fujita;
Masaaki Matsubara;
Daisuke Shinmachi;
Shinichiro Tsuchiya;
Issaku Yamada;
Pierce, Michael;
Ranzinger, René;
Hisashi Narimatsu;
Aoki-Kinoshita, Kiyoko F.

Publication type:

Article

Qrator: A web-based curation tool for glycan structures.

Published in:

Glycobiology, 2015, v. 25, n. 1, p. 66, doi. 10.1093/glycob/cwu090

By:

Eavenson, Matthew;
Kochut, Krys J;
Miller, John A;
Ranzinger, René;
Tiemeyer, Michael;
Aoki, Kazuhiro;
York, William S

Publication type:

Article

MIRAGE: The minimum information required for a glycomics experiment.

Published in:

Glycobiology, 2014, v. 24, n. 5, p. 402, doi. 10.1093/glycob/cwu018

By:

York, William S;
Agravat, Sanjay;
Aoki-Kinoshita, Kiyoko F;
McBride, Ryan;
Campbell, Matthew P;
Costello, Catherine E;
Dell, Anne;
Feizi, Ten;
Haslam, Stuart M;
Karlsson, Niclas;
Khoo, Kay-Hooi;
Kolarich, Daniel;
Liu, Yan;
Novotny, Milos;
Packer, Nicolle H;
Paulson, James C;
Rapp, Erdmann;
Ranzinger, Rene;
Rudd, Pauline M;
Smith, David F

Publication type:

Article

The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes.

Published in:

Glycobiology, 2012, v. 22, n. 3, p. 439, doi. 10.1093/glycob/cwr117

By:

Kulkarni, Ameya R;
Peña, Maria J;
Avci, Utku;
Mazumder, Koushik;
Urbanowicz, Breeanna R;
Pattathil, Sivakumar;
Yin, Yanbin;
O'Neill, Malcolm A;
Roberts, Alison W;
Hahn, Michael G;
Xu, Ying;
Darvill, Alan G;
York, William S

Publication type:

Article

Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants.

Published in:

Glycobiology, 2008, v. 18, n. 11, p. 891, doi. 10.1093/glycob/cwn078

By:

Maria J Peña;
Alan G. Darvill;
Stefan Eberhard;
William S York;
Malcolm A ONeill

Publication type:

Article

Structural, mutagenic and in silico studies of xyloglucan fucosylation in Arabidopsis thaliana suggest a water-mediated mechanism.

Published in:

Plant Journal, 2017, v. 91, n. 6, p. 931, doi. 10.1111/tpj.13628

By:

Urbanowicz, Breeanna R.;
Bharadwaj, Vivek S.;
Alahuhta, Markus;
Peña, Maria J.;
Lunin, Vladimir V.;
Bomble, Yannick J.;
Wang, Shuo;
Yang, Jeong‐Yeh;
Tuomivaara, Sami T.;
Himmel, Michael E.;
Moremen, Kelley W.;
York, William S.;
Crowley, Michael F.

Publication type:

Article

Two Arabidopsis proteins synthesize acetylated xylan in vitro.

Published in:

Plant Journal, 2014, v. 80, n. 2, p. 197, doi. 10.1111/tpj.12643

By:

Urbanowicz, Breeanna R.;
Peña, Maria J.;
Moniz, Heather A.;
Moremen, Kelley W.;
York, William S.

Publication type:

Article

Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006).

Published in:

Proteomics, 2008, v. 8, n. 1, p. 8, doi. 10.1002/pmic.200700917

By:

Packer, Nicolle H.;
von der Lieth, Claus-Wilhelm;
Aoki-Kinoshita, Kiyoko F.;
Lebrilla, Carlito B.;
Paulson, James C.;
Raman, Rahul;
Rudd, Pauline;
Sasisekharan, Ram;
Taniguchi, Naoyuki;
York, William S.

Publication type:

Article

An unambiguous nomenclature for xyloglucan-derived oligosaccharides.

Published in:

Physiologia Plantarum, 1993, v. 89, n. 1, p. 1, doi. 10.1111/j.1399-3054.1993.tb01778.x

By:

Fry, Stephen C.;
York, William S.;
Albersheim, Peter;
Darvill, Alan;
Takahisa Hayashi;
Joseleau, Jean-Paul;
Yoji Kato;
Pérez Lorences, Ester;
Maclachlan, Gordon A.;
McNeil, Michael;
Mort, Andrew J.;
Reid, J. S. Grant;
Seitz, Hanns Ulrich;
Selvendran, Robert R.;
Voragen, Alphons G. J.;
White, Alan R.

Publication type:

Article

Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase.

Published in:

Plant Journal, 2003, v. 34, n. 3, p. 327, doi. 10.1046/j.1365-313X.2003.01726.x

By:

Qin, Qiang;
Bergmann, Carl W.;
Rose, Jocelyn K. C.;
Saladie, Montserrat;
Kolli, V. S. Kumar;
Albersheim, Peter;
Darvill, Alan G.;
York, William S.

Publication type:

Article

Are Steroid and Puerperal Psychoses Manifestations of Bipolar Disorder? A Case Series.

Published in:

International Medical Journal, 2013, v. 20, n. 1, p. 7

By:

Kamatchi, Rajkumar;
Kumar Jainer, Ashok;
Somashekar, Bettahalasoor;
Marzanski, Marek;
Pathania, Rani;
Cook, Jenna;
York Moore, William

Publication type:

Article

Effects of the mur1 mutation on xyloglucans produced by suspension-cultured Arabidopsis thaliana cells.

Published in:

Planta: An International Journal of Plant Biology, 2001, v. 214, n. 1, p. 67, doi. 10.1007/s004250100585

By:

Pauly, Markus;
Eberhard, Stefan;
Albersheim, Peter;
Darvill, Alan;
York, William S.

Publication type:

Article

Changes in the structure of xyloglucan during cell elongation.

Published in:

Planta: An International Journal of Plant Biology, 2001, v. 212, n. 5/6, p. 842, doi. 10.1007/s004250000448

By:

Pauly, Markus;
Qin, Qiang;
Greene, Henry;
Albersheim, Peter;
Darvill, Alan;
York, William S.

Publication type:

Article

Molecular Mechanism of Polysaccharide Acetylation by the Arabidopsis Xylan O-acetyltransferase XOAT1.

Published in:

Plant Cell, 2020, v. 32, n. 7, p. 2367, doi. 10.1105/tpc.20.00028

By:

Lunin, Vladimir V.;
Wang, Hsin-Tzu;
Bharadwaj, Vivek S.;
Alahuhta, Markus;
Peña, Maria J.;
Yang, Jeong-Yeh;
Archer-Hartmann, Stephanie A.;
Azadi, Parastoo;
Himmel, Michael E.;
Moremen, Kelley W.;
York, William S.;
2, Yannick J. Bomble;
2, Breeanna R. Urbanowicz

Publication type:

Article

Galacturonic Acid–Containing Xyloglucan Is Involved in Arabidopsis Root Hair Tip Growth.

Published in:

Plant Cell, 2012, v. 24, n. 11, p. 4511, doi. 10.1105/tpc.112.103390

By:

Peña, Maria J.;
Kong, Yingzhen;
York, William S.;
O'Neill, Malcolm A.

Publication type:

Article

AXY8 Encodes an α-Fucosidase, Underscoring the Importance of Apoplastic Metabolism on the Fine Structure of Arabidopsis Cell Wall Polysaccharides.

Published in:

Plant Cell, 2011, v. 23, n. 11, p. 4025, doi. 10.1105/tpc.111.089193

By:

Günl, Markus;
Neumetzler, Lutz;
Kraemer, Florian;
Souza, Amancio de;
Schultink, Alex;
Pena, Maria;
York, William S.;
Pauly, Markus

Publication type:

Article

Molecular domains of the cellulose/xyloglucan network in the cell walls of higher plants.

Published in:

Plant Journal, 1999, v. 20, n. 6, p. 629, doi. 10.1046/j.1365-313X.1999.00630.x

By:

Pauly, Markus;
Albersheim, Peter;
Darvill, Alan;
York, William S.

Publication type:

Article

Simulations of the static and dynamic molecular conformations of xyloglucan. The role of the fucosylated sidechain in surface-specific sidechain folding.

Published in:

Plant Journal, 1991, v. 1, n. 2, p. 195, doi. 10.1111/j.1365-313X.1991.00195.x

By:

Levy, Samuel;
York, William S.;
Stuike-Prill, Rainer;
Meyer, Bernd;
Staehelin, L. Andrew

Publication type:

Article

Simple modification of a protein database for mass spectral identification of N-linked glycopeptides.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2005, v. 19, n. 21, p. 3002, doi. 10.1002/rcm.2162

By:

Atwood, James A.;
Sahoo, Satya S.;
Alvarez-Manilla, Gerardo;
Weatherly, Daniel B.;
Kolli, Kumar;
Orlando, Ron;
York, William S.

Publication type:

Article

EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 242, doi. 10.1093/bioinformatics/btu609

By:

Al Jadda, Khalifeh;
Porterfield, Melody P.;
Bridger, Robert;
Heiss, Christian;
Tiemeyer, Michael;
Wells, Lance;
Miller, John A.;
York, William S.;
Ranzinger, Rene

Publication type:

Article

Modulating local S1P receptor signaling as a regenerative immunotherapy after volumetric muscle loss injury.

Published in:

Journal of Biomedical Materials Research, Part A, 2021, v. 109, n. 5, p. 695, doi. 10.1002/jbm.a.37053

By:

Hymel, Lauren A.;
Ogle, Molly E.;
Anderson, Shannon E.;
San Emeterio, Cheryl L.;
Turner, Thomas C.;
York, William Y.;
Liu, Alan Y.;
Olingy, Claire E.;
Sridhar, Sraeyes;
Lim, Hong Seo;
Sulchek, Todd;
Qiu, Peng;
Jang, Young C.;
Willett, Nick J.;
Botchwey, Edward A.

Publication type:

Article

Mine emergency risk preparedness and readiness self-assessment; A proactive approach.

Published in:

Mining Engineering, 2018, v. 70, n. 10, p. 35

By:

Stalfort, David;
York-Feirn, William C.;
Kravitz, Jeffrey H.

Publication type:

Article

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis.

Published in:

Biotechnology for Biofuels, 2015, v. 8, p. 1, doi. 10.1186/s13068-015-0403-z

By:

Srivastava, Avinash C.;
Fang Chen;
Ray, Tui;
Pattathil, Sivakumar;
Peña, Maria J.;
Avci, Utku;
Hongjia Li;
Huhman, David V.;
Backe, Jason;
Urbanowicz, Breeanna;
Miller, Jeffrey S.;
Bedair, Mohamed;
Wyman, Charles E.;
Sumner, Lloyd W.;
York, William S.;
Hahn, Michael G.;
Dixon, Richard A.;
Blancaflor, Elison B.;
Yuhong Tang

Publication type:

Article

Galactose-Depleted Xyloglucan Is Dysfunctional and Leads to Dwarfism in Arabidopsis.

Published in:

Plant Physiology, 2015, v. 167, n. 4, p. 1296, doi. 10.1104/pp.114.255943

By:

Yingzhen Kong;
Peña, Maria J.;
Renna, Luciana;
Avci, Utku;
Pattathil, Sivakumar;
Tuomivaara, Sami T.;
Xuemei Li;
Reiter, Wolf-Dieter;
Brandizzi, Federica;
Hahn, Michael G.;
Darvill, Alan G.;
York, William S.;
O'Neill, Malcolm A.

Publication type:

Article

A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies.

Published in:

Plant Physiology, 2010, v. 153, n. 2, p. 514, doi. 10.1104/pp.109.151985

By:

Pattathil, Sivakumar;
Avci, Utku;
Baldwin, David;
Swennes, Alton G.;
McGill, Janelle A.;
Popper, Zoë;
Bootten, Tracey;
Albert, Anathea;
Davis, Ruth H.;
Chennareddy, Chakravarthy;
Ruihua Dong;
O'Shea, Beth;
Rossi, Ray;
Leoff, Christine;
Freshour, Glenn;
Narra, Rajesh;
O'Neil, Malcolm;
York, William S.;
Hahn, Michael G.

Publication type:

Article

The neuropsychiatric effects of nitrous oxide and low vitamin B<sub>12</sub>.

Published in:

BJPsych Advances, 2022, v. 28, n. 4, p. 216, doi. 10.1192/bja.2021.55

By:

Farmer, Joseph;
Romain, Karen;
Ibrahim, Mina;
Kumar, Manoj;
York Moore, William

Publication type:

Article

Brain Iron Dysregulation in Iron Deficiency Anemia‐Related Restless Leg Syndrome Revealed by Neuron‐Derived Extracellular Vesicles: A Case–Control Study.

Published in:

Annals of Neurology, 2024, v. 96, n. 3, p. 560, doi. 10.1002/ana.26941

By:

Manolopoulos, Apostolos;
York, William;
Pucha, Krishna Ananthu;
Earley, Christopher J.;
Kapogiannis, Dimitrios

Publication type:

Article

Increased fluorescence observation intensity during the photodynamic diagnosis of deeply located tumors by fluorescence photoswitching of protoporphyrin IX.

Published in:

Journal of Biomedical Optics, 2023, v. 28, n. 5, p. 55001, doi. 10.1117/1.JBO.28.5.055001

By:

Ogbonna, Sochi J.;
York, William Y.;
Nishimura, Takahiro;
Hazama, Hisanao;
Fukuhara, Hideo;
Inoue, Keiji;
Awazu, Kunio

Publication type:

Article

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum).

Published in:

Plant Biotechnology Journal, 2019, v. 17, n. 3, p. 580, doi. 10.1111/pbi.13000

By:

Rao, Xiaolan;
Chen, Xin;
Shen, Hui;
Ma, Qin;
Li, Guifen;
Tang, Yuhong;
Pena, Maria;
York, William;
Frazier, Taylor P.;
Lenaghan, Scott;
Xiao, Xirong;
Chen, Fang;
Dixon, Richard A.

Publication type:

Article

Development of a thermophilic coculture for corn fiber conversion to ethanol.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15704-z

By:

Beri, Dhananjay;
York, William S.;
Lynd, Lee R.;
Peña, Maria J.;
Herring, Christopher D.

Publication type:

Article

Structural diversity of xylans in the cell walls of monocots.

Published in:

Planta: An International Journal of Plant Biology, 2016, v. 244, n. 3, p. 589, doi. 10.1007/s00425-016-2527-1

By:

Peña, Maria;
Kulkarni, Ameya;
Backe, Jason;
Boyd, Michael;
O'Neill, Malcolm;
York, William

Publication type:

Article

Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls.

Published in:

Planta: An International Journal of Plant Biology, 2015, v. 242, n. 5, p. 1123, doi. 10.1007/s00425-015-2344-y

By:

Muszyński, Artur;
O'Neill, Malcolm;
Ramasamy, Easwaran;
Pattathil, Sivakumar;
Avci, Utku;
Peña, Maria;
Libault, Marc;
Hossain, Md;
Brechenmacher, Laurent;
York, William;
Barbosa, Rommel;
Hahn, Michael;
Stacey, Gary;
Carlson, Russell

Publication type:

Article

Identifying dysregulated immune cell subsets following volumetric muscle loss with pseudo-time trajectories.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04790-6

By:

Hymel, Lauren A.;
Anderson, Shannon E.;
Turner, Thomas C.;
York, William Y.;
Zhang, Hongmanlin;
Liversage, Adrian R.;
Lim, Hong Seo;
Qiu, Peng;
Mortensen, Luke J.;
Jang, Young C.;
Willett, Nick J.;
Botchwey, Edward A.

Publication type:

Article

Structural studies on sucrose monolaurate.

Published in:

Journal of the American Oil Chemists' Society (JAOCS), 1956, v. 33, n. 9, p. 424, doi. 10.1007/BF02630773

By:

York, William;
Finchler, Arthur;
Osipow, Lloyd;
SNell, Foster

Publication type:

Article

CURRENT TRENDS IN COMMUNITY THEATRE OPERATION.

Published in:

Quarterly Journal of Speech, 1949, v. 35, n. 4, p. 464, doi. 10.1080/00335634909381521

By:

York, William

Publication type:

Article

Designer biomass for next-generation biorefineries: leveraging recent insights into xylan structure and biosynthesis.

Published in:

Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0973-z

By:

Smith, Peter J.;
Hsin-Tzu Wang;
York, William S.;
Peña, Maria J.;
Urbanowicz, Breeanna R.

Publication type:

Article