Works by Yokochi, Masashi

Results: 17

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 6, p. 503, doi. 10.1038/nsmb1241

By:

Kobashigawa, Yoshihiro;
Sakai, Mieko;
Naito, Masato;
Yokochi, Masashi;
Kumeta, Hiroyuki;
Makino, Yoshinori;
Ogura, Kenji;
Tanaka, Shinya;
Inagaki, Fuyuhiko

Publication type:

Article

Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.

Published in:

Journal of Biomolecular NMR, 2012, v. 53, n. 1, p. 53, doi. 10.1007/s10858-012-9623-8

By:

Kobashigawa, Yoshihiro;
Saio, Tomohide;
Ushio, Masahiro;
Sekiguchi, Mitsuhiro;
Yokochi, Masashi;
Ogura, Kenji;
Inagaki, Fuyuhiko

Publication type:

Article

An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe.

Published in:

Journal of Biomolecular NMR, 2011, v. 51, n. 3, p. 395, doi. 10.1007/s10858-011-9566-5

By:

Saio, Tomohide;
Ogura, Kenji;
Shimizu, Kazumi;
Yokochi, Masashi;
Burke, Terrence;
Inagaki, Fuyuhiko

Publication type:

Article

PCS-based structure determination of protein–protein complexes.

Published in:

Journal of Biomolecular NMR, 2010, v. 46, n. 4, p. 271, doi. 10.1007/s10858-010-9401-4

By:

Saio, Tomohide;
Yokochi, Masashi;
Kumeta, Hiroyuki;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-κB signaling pathway.

Published in:

Journal of Biomolecular NMR, 2009, v. 45, n. 3, p. 335, doi. 10.1007/s10858-009-9370-7

By:

Saio, Tomohide;
Yokochi, Masashi;
Inagaki, Fuyuhiko

Publication type:

Article

Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Published in:

Journal of Biomolecular NMR, 2009, v. 44, n. 3, p. 157, doi. 10.1007/s10858-009-9325-z

By:

Saio, Tomohide;
Ogura, Kenji;
Yokochi, Masashi;
Kobashigawa, Yoshihiro;
Inagaki, Fuyuhiko

Publication type:

Article

Solution structure of the Grb2 SH2 domain complexed with a high-affinity inhibitor.

Published in:

Journal of Biomolecular NMR, 2008, v. 42, n. 3, p. 197, doi. 10.1007/s10858-008-9272-0

By:

Ogura, Kenji;
Shiga, Takanori;
Yokochi, Masashi;
Yuzawa, Satoru;
Burke, Terrence;
Inagaki, Fuyuhiko

Publication type:

Article

1H, 13C and 15N resonance assignments of the backbone and methyl groups of the 24 kDa tetratricopeptide repeat domain in p67 phox.

Published in:

Journal of Biomolecular NMR, 2005, v. 32, n. 2, p. 176, doi. 10.1007/s10858-005-5276-1

By:

Yoshida, Shinichi;
Ogura, Kenji;
Yokochi, Masashi;
Yuzawa, Satoru;
Horiuchi, Masataka;
Morioka, Hiroshi;
Sumimoto, Hideki;
Inagaki, Fuyuhiko

Publication type:

Article

Letter to the Editor: Sequence-specific Resonance Assignments of the Tandem SH3 Domains in an Autoinhibitory form of p47phox.

Published in:

Journal of Biomolecular NMR, 2004, v. 29, n. 3, p. 451, doi. 10.1023/B:JNMR.0000032561.54246.34

By:

Yuzawa, Satoru;
Yokochi, Masashi;
Fujioka, Yuko;
Ogura, Kenji;
Sumimoto, Hideki;
Inagaki, Fuyuhiko

Publication type:

Article

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0057-1

By:

Masashi Yokochi;
Naohiro Kobayashi;
Ulrich, Eldon L.;
Akira R. Kinjo;
Takeshi Iwata;
Yannis E. Ioannidis;
Livny, Miron;
Markley, John L.;
Haruki Nakamura;
Chojiro Kojima;
Toshimichi Fujiwara

Publication type:

Article

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Published in:

Scientific Reports, 2015, p. 16685, doi. 10.1038/srep16685

By:

Saio, Tomohide;
Ogura, Kenji;
Kumeta, Hiroyuki;
Kobashigawa, Yoshihiro;
Shimizu, Kazumi;
Yokochi, Masashi;
Inagaki, Fuyuhiko;
Kodama, Kota;
Yamaguchi, Hiroto;
Tsujishita, Hideki

Publication type:

Article

The Cooperative Role of OsCnfU-1A Domain I and Domain II in the Iron–Sulphur Cluster Transfer Process as Revealed by NMR.

Published in:

Journal of Biochemistry, 2007, v. 142, n. 1, p. 113, doi. 10.1093/jb/mvm120

By:

Saio, Tomohide;
Kumeta, Hiroyuki;
Ogura, Kenji;
Yokochi, Masashi;
Asayama, Munehiko;
Katoh, Shizue;
Katoh, Etsuko;
Teshima, Keizo;
Inagaki, Fuyuhiko

Publication type:

Article

The PB1 domain and the PC motif-containing region are structurally similar protein binding modules.

Published in:

EMBO Journal, 2003, v. 22, n. 19, p. 4888, doi. 10.1093/emboj/cdg475

By:

Yoshinaga, Sosuke;
Kohjima, Motoyuki;
Ogura, Kenji;
Yokochi, Masashi;
Takeya, Ryu;
Ito, Takashi;
Sumimoto, Hideki;
Inagaki, Fuyuhiko

Publication type:

Article

Biological Magnetic Resonance Data Bank.

Published in:

Nucleic Acids Research, 2023, v. 51, n. D1, p. D368, doi. 10.1093/nar/gkac1050

By:

Hoch, Jeffrey C;
Baskaran, Kumaran;
Burr, Harrison;
Chin, John;
Eghbalnia, Hamid R;
Fujiwara, Toshimichi;
Gryk, Michael R;
Iwata, Takeshi;
Kojima, Chojiro;
Kurisu, Genji;
Maziuk, Dmitri;
Miyanoiri, Yohei;
Wedell, Jonathan R;
Wilburn, Colin;
Yao, Hongyang;
Yokochi, Masashi

Publication type:

Article

An evaluation tool for FKBP12-dependent and -independent mTOR inhibitors using a combination of FKBP-mTOR fusion protein, DSC and NMR.

Published in:

PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 11, p. 811, doi. 10.1093/protein/gzr045

By:

Sekiguchi, Mitsuhiro;
Kobashigawa, Yoshihiro;
Kawasaki, Masashi;
Yokochi, Masashi;
Kiso, Tetsuo;
Suzumura, Ken-ichi;
Mori, Keitaro;
Teramura, Toshio;
Inagaki, Fuyuhiko

Publication type:

Article

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 173, doi. 10.1002/pro.4211

By:

Bekker, Gert‐Jan;
Yokochi, Masashi;
Suzuki, Hirofumi;
Ikegawa, Yasuyo;
Iwata, Takeshi;
Kudou, Takahiro;
Yura, Kei;
Fujiwara, Toshimichi;
Kawabata, Takeshi;
Kurisu, Genji

Publication type:

Article

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 95, doi. 10.1002/pro.3273

By:

Kinjo, Akira R.;
Bekker, Gert‐Jan;
Wako, Hiroshi;
Endo, Shigeru;
Tsuchiya, Yuko;
Sato, Hiromu;
Nishi, Hafumi;
Kinoshita, Kengo;
Suzuki, Hirofumi;
Kawabata, Takeshi;
Yokochi, Masashi;
Iwata, Takeshi;
Kobayashi, Naohiro;
Fujiwara, Toshimichi;
Kurisu, Genji;
Nakamura, Haruki

Publication type:

Article

Works by Yokochi, Masashi

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination.

An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe.

PCS-based structure determination of protein–protein complexes.

The NMR structure of the p62 PB1 domain, a key protein in autophagy and NF-κB signaling pathway.

Two-point anchoring of a lanthanide-binding peptide to a target protein enhances the paramagnetic anisotropic effect.

Solution structure of the Grb2 SH2 domain complexed with a high-affinity inhibitor.

<sup>1</sup>H, <sup>13</sup>C and <sup>15</sup>N resonance assignments of the backbone and methyl groups of the 24 kDa tetratricopeptide repeat domain in p67<sup> phox</sup>.

Letter to the Editor: Sequence-specific Resonance Assignments of the Tandem SH3 Domains in an Autoinhibitory form of p47<sup>phox</sup>.

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

The Cooperative Role of OsCnfU-1A Domain I and Domain II in the Iron–Sulphur Cluster Transfer Process as Revealed by NMR.

The PB1 domain and the PC motif-containing region are structurally similar protein binding modules.

Biological Magnetic Resonance Data Bank.

An evaluation tool for FKBP12-dependent and -independent mTOR inhibitors using a combination of FKBP-mTOR fusion protein, DSC and NMR.

Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.

New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).