Works by Yixue Li

Results: 198

Response to Comment on Adam et al. Metformin Effect on Nontargeted Metabolite Profiles in Patients With Type 2 Diabetes and in Multiple Murine Tissues. Diabetes 2016;65:3776-3785.

Published in:

2017

By:

Adam, Jonathan;
Brandmaier, Stefan;
Troll, Martina;
Rotter, Markus;
Mohney, Robert P.;
Heier, Margit;
Adamski, Jerzy;
Yixue Li;
Neschen, Susanne;
Kastenmüller, Gabi;
Suhre, Karsten;
Ankerst, Donna;
Meitinger, Thomas;
Rui Wang-Sattler;
Li, Yixue;
Wang-Sattler, Rui

Publication type:

Letter

Mechanisms of drug combinations: interaction and network perspectives.

Published in:

2009

By:

Jia Jia;
Feng Zhu;
Xiaohua Ma;
Cao, Zhiwei W.;
Li, Yixue X.;
Yu Zong Chen;
Jia, Jia;
Zhu, Feng;
Ma, Xiaohua;
Cao, Zhiwei;
Li, Yixue;
Chen, Yu Zong

Publication type:

research

Whole-genome sequencing of Chinese centenarians reveals important genetic variants in aging WGS of centenarian for genetic analysis of aging.

Published in:

Human Genomics, 2020, v. 14, n. 1, p. 1, doi. 10.1186/s40246-020-00271-7

By:

Shen, Shuhua;
Li, Chao;
Xiao, Luwei;
Wang, Xiaoming;
Lv, Hang;
Shi, Yuan;
Li, Yixue;
Huang, Qi

Publication type:

Article

Scp3 expression in relation to the ovarian differentiation in the protogynous hermaphroditic ricefield eel Monopterus albus.

Published in:

Fish Physiology & Biochemistry, 2016, v. 42, n. 6, p. 1609, doi. 10.1007/s10695-016-0244-0

By:

Li, Yixue;
He, Zhi;
Shi, Shuxia;
Zhang, Yize;
Chen, Dong;
Zhang, Weimin;
Zhang, Lihong

Publication type:

Article

Comparing Computational Methods for Identification of Allele-Specific Expression based on Next Generation Sequencing Data.

Published in:

Genetic Epidemiology, 2014, v. 38, n. 7, p. 591, doi. 10.1002/gepi.21846

By:

Liu, Zhi;
Yang, Jing;
Xu, Huayong;
Li, Chao;
Wang, Zhen;
Li, Yuanyuan;
Dong, Xiao;
Li, Yixue

Publication type:

Article

Network Analysis Reveals Functional Cross-links between Disease and Inflammation Genes.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep03426

By:

Yunpeng Zhang;
Huihui Fan;
Juan Xu;
Yun Xiao;
Yanjun Xu;
Yixue Li;
Xia Li

Publication type:

Article

Pan-Cancer Analysis of Head-to-Head Gene Pairs in Terms of Transcriptional Activity, Co-expression and Regulation.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.560997

By:

Chen, Yunqin;
Li, Hong;
Li, Yuan-Yuan;
Li, Yixue

Publication type:

Article

Associations of erythrocyte polyunsaturated fatty acids with incidence of stroke and stroke types in adult Chinese: a prospective study of over 8000 individuals.

Published in:

European Journal of Nutrition, 2022, v. 61, n. 6, p. 3235, doi. 10.1007/s00394-022-02879-y

By:

Sun, Liang;
Du, Huaidong;
Zong, Geng;
Guo, Yu;
Chen, Yan;
Chen, Yiping;
Yin, Huiyong;
Pei, Pei;
Yang, Ling;
Chu, Qianqian;
Yu, Canqing;
Li, Yixue;
Lv, Jun;
Zheng, He;
Zhou, Puchen;
Chen, Junshi;
Li, Liming;
Chen, Zhengming;
Lin, Xu

Publication type:

Article

Highly efficient base editing in human tripronuclear zygotes.

Published in:

Protein & Cell, 2017, v. 8, n. 10, p. 772, doi. 10.1007/s13238-017-0459-6

By:

Changyang Zhou;
Meiling Zhang;
Yu Wei;
Yidi Sun;
Yun Sun;
Hong Pan;
Ning Yao;
Wanxia Zhong;
Yixue Li;
Weiping Li;
Hui Yang;
Zi-jiang Chen

Publication type:

Article

Cell type specificity of signaling: view from membrane receptors distribution and their downstream transduction networks.

Published in:

Protein & Cell, 2012, v. 3, n. 9, p. 701, doi. 10.1007/s13238-012-2049-y

By:

He, Ying;
Yu, Zhonghao;
Ge, Dongya;
Wang-Sattler, Rui;
Thiesen, Hans-Jürgen;
Xie, Lu;
Li, Yixue

Publication type:

Article

Prediction of functional phosphorylation sites by incorporating evolutionary information.

Published in:

Protein & Cell, 2012, v. 3, n. 9, p. 675, doi. 10.1007/s13238-012-2048-z

By:

Niu, Shen;
Wang, Zhen;
Ge, Dongya;
Zhang, Guoqing;
Li, Yixue

Publication type:

Article

Study of drug function based on similarity of pathway fingerprint.

Published in:

Protein & Cell, 2012, v. 3, n. 2, p. 132, doi. 10.1007/s13238-012-2011-z

By:

Ye, Hao;
Tang, Kailin;
Yang, Linlin;
Cao, Zhiwei;
Li, Yixue

Publication type:

Article

SySAP: a system-level predictor of deleterious single amino acid polymorphisms.

Published in:

Protein & Cell, 2012, v. 3, n. 1, p. 38, doi. 10.1007/s13238-011-1130-2

By:

Huang, Tao;
Wang, Chuan;
Zhang, Guoqing;
Xie, Lu;
Li, Yixue

Publication type:

Article

Land-Use Optimization Based on Ecological Security Pattern—A Case Study of Baicheng, Northeast China.

Published in:

Remote Sensing, 2023, v. 15, n. 24, p. 5671, doi. 10.3390/rs15245671

By:

Peng, Bin;
Yang, Jiuchun;
Li, Yixue;
Zhang, Shuwen

Publication type:

Article

Integrated genomic and transcriptomic analysis reveals unique characteristics of hepatic metastases and pro-metastatic role of complement C1q in pancreatic ductal adenocarcinoma.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-020-02222-w

By:

Yang, Jianyu;
Lin, Ping;
Yang, Minwei;
Liu, Wei;
Fu, Xueliang;
Liu, Dejun;
Tao, Lingye;
Huo, Yanmiao;
Zhang, Junfeng;
Hua, Rong;
Zhang, Zhigang;
Li, Yixue;
Wang, Liwei;
Xue, Jing;
Li, Hong;
Sun, Yongwei

Publication type:

Article

The HUPO PSI's Molecular Interaction format-a community standard for the representation of protein interaction data.

Published in:

Nature Biotechnology, 2004, v. 22, n. 2, p. 177, doi. 10.1038/nbt926

By:

Bader, Gary;
Wojcik, Jérôme;
Salwinski, Lukasz;
Ceol, Arnaud;
Moore, Susan;
Orchard, Sandra;
Sarkans, Ugis;
von Mering, Christian;
Roechert, Bernd;
Poux, Sylvain;
Jung, Eva;
Mersch, Henning;
Kersey, Paul;
Lappe, Michael;
Yixue Li, Michael;
Rong Zeng;
Rana, Debashis;
Nikolski, Macha;
Husi, Holger;
Brun, Christine

Publication type:

Article

Inferences of individual drug responses across diverse cancer types using a novel competing endogenous RNA network.

Published in:

Molecular Oncology, 2018, v. 12, n. 9, p. 1429, doi. 10.1002/1878-0261.12181

By:

Zhang, Yan;
Li, Xin;
Zhou, Dianshuang;
Zhi, Hui;
Wang, Peng;
Gao, Yue;
Guo, Maoni;
Yue, Ming;
Wang, Yanxia;
Shen, Weitao;
Ning, Shangwei;
Li, Yixue;
Li, Xia

Publication type:

Article

Multiple transcription factors contribute to inter-chromosomal interaction in yeast.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0643-1

By:

Dai, Yulin;
Li, Chao;
Pei, Guangsheng;
Dong, Xiao;
Ding, Guohui;
Zhao, Zhongming;
Li, Yixue;
Jia, Peilin

Publication type:

Article

A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 22, p. 3561, doi. 10.1002/rcm.3765

By:

Sheng, Quanhu;
Mechref, Yehia;
Li, Yixue;
Novotny, Milos V.;
Tang, Haixu

Publication type:

Article

Potential roles of Cornichon Family AMPA Receptor Auxiliary Protein 4 (CNIH4) in head and neck squamous cell carcinoma.

Published in:

Cancer Biomarkers, 2022, v. 35, n. 4, p. 439, doi. 10.3233/CBM-220143

By:

Liu, Hengrui;
Li, Yixue

Publication type:

Article

Clinical powers of Aminoacyl tRNA Synthetase Complex Interacting Multifunctional Protein 1 (AIMP1) for head-neck squamous cell carcinoma.

Published in:

Cancer Biomarkers, 2022, v. 34, n. 3, p. 359, doi. 10.3233/CBM-210340

By:

Li, Yixue;
Liu, Hengrui

Publication type:

Article

On the estimation of false positives in peptide identifications using decoy search strategy.

Published in:

Proteomics, 2009, v. 9, n. 1, p. 194, doi. 10.1002/pmic.200800330

By:

Shen, Changyu;
Sheng, Quanhu;
Dai, Jie;
Li, Yixue;
Zeng, Rong;
Tang, Haixu

Publication type:

Article

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D728, doi. 10.1093/nar/gks1087

By:

Zerlotini, Adhemar;
Aguiar, Eric R. G. R.;
Fudong Yu;
Huayong Xu;
Yixue Li;
Young, Neil D.;
Gasser, Robin B.;
Protasio, Anna V.;
Berriman, Matthew;
Roos, David S.;
Kissinger, Jessica C.;
Oliveira, Guilherme

Publication type:

Article

dbDEPC 2.0: updated database of differentially expressed proteins in human cancers.

Published in:

Nucleic Acids Research, 2012, p. D964, doi. 10.1093/nar/gkr936

By:

He, Ying;
Zhang, Menghuan;
Ju, Yuanhu;
Yu, Zhonghao;
Lv, Daqing;
Sun, Han;
Yuan, Weilan;
He, Fei;
Zhang, Jianshe;
Li, Hong;
Li, Jing;
Wang-Sattler, Rui;
Li, Yixue;
Zhang, Guoqing;
Xie, Lu

Publication type:

Article

Dr.VIS: a database of human disease-related viral integration sites.

Published in:

Nucleic Acids Research, 2012, p. D1041, doi. 10.1093/nar/gkr1142

By:

Zhao, Xin;
Liu, Qi;
Cai, Qingqing;
Li, Yanyun;
Xu, Congjian;
Li, Yixue;
Li, Zuofeng;
Zhang, Xiaoyan

Publication type:

Article

Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e153, doi. 10.1093/nar/gkr770

By:

Li, Xia;
Wang, Qianghu;
Zheng, Yan;
Lv, Sali;
Ning, Shangwei;
Sun, Jie;
Huang, Teng;
Zheng, Qifan;
Ren, Huan;
Xu, Jin;
Wang, Xishan;
Li, Yixue

Publication type:

Article

HIT: linking herbal active ingredients to targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1055

By:

Ye, Hao;
Ye, Li;
Kang, Hong;
Zhang, Duanfeng;
Tao, Lin;
Tang, Kailin;
Liu, Xueping;
Zhu, Ruixin;
Liu, Qi;
Chen, Y. Z.;
Li, Yixue;
Cao, Zhiwei

Publication type:

Article

ASD: a comprehensive database of allosteric proteins and modulators.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D663, doi. 10.1093/nar/gkq1022

By:

Huang, Zhimin;
Zhu, Liang;
Cao, Yan;
Wu, Geng;
Liu, Xinyi;
Chen, Yingyi;
Wang, Qi;
Shi, Ting;
Zhao, Yaxue;
Wang, Yuefei;
Li, Weihua;
Li, Yixue;
Chen, Haifeng;
Chen, Guoqiang;
Zhang, Jian

Publication type:

Article

dbDEPC: a database of Differentially Expressed Proteins in human Cancers.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D658, doi. 10.1093/nar/gkp933

By:

Hong Li;
Ying He;
Guohui Ding;
Chuan Wang;
Lu Xie;
Yixue Li

Publication type:

Article

SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D913

By:

Xi, Hong;
Park, Jongsun;
Ding, Guohui;
Lee, Yong-Hwan;
Li, Yixue

Publication type:

Article

SysZNF: the C2H2 zinc finger gene database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D267, doi. 10.1093/nar/gkn782

By:

Ding, Guohui;
Lorenz, Peter;
Kreutzer, Michael;
Li, Yixue;
Thiesen, Hans-Juergen

Publication type:

Article

Gene expression module-based chemical function similarity search.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 20, p. e137

By:

Li, Yun;
Hao, Pei;
Zheng, Siyuan;
Tu, Kang;
Fan, Haiwei;
Zhu, Ruixin;
Ding, Guohui;
Dong, Changzheng;
Wang, Chuan;
Li, Xuan;
Thiesen, H.-J.;
Chen, Y. Eugene;
Jiang, Hualiang;
Liu, Lei;
Li, Yixue

Publication type:

Article

EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D255

By:

Ding, Guohui;
Sun, Yan;
Li, Hong;
Wang, Zhen;
Fan, Haiwei;
Wang, Chuan;
Yang, Dan;
Li, Yixue

Publication type:

Article

AtPID: Arabidopsis thaliana protein interactome database—an integrative platform for plant systems biology.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D999

By:

Cui, Jian;
Li, Peng;
Li, Guang;
Xu, Feng;
Zhao, Chen;
Li, Yuhua;
Yang, Zhongnan;
Wang, Guang;
Yu, Qingbo;
Li, Yixue;
Shi, Tieliu

Publication type:

Article

Single-cell RNA sequencing of peripheral blood mononuclear cells from acute Kawasaki disease patients.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25771-5

By:

Wang, Zhen;
Xie, Lijian;
Ding, Guohui;
Song, Sirui;
Chen, Liqin;
Li, Guang;
Xia, Min;
Han, Dingding;
Zheng, Yue;
Liu, Jia;
Xiao, Tingting;
Zhang, Hong;
Huang, Yujuan;
Li, Yixue;
Huang, Min

Publication type:

Article

Optimization of C-to-G base editors with sequence context preference predictable by machine learning methods.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25217-y

By:

Yuan, Tanglong;
Yan, Nana;
Fei, Tianyi;
Zheng, Jitan;
Meng, Juan;
Li, Nana;
Liu, Jing;
Zhang, Haihang;
Xie, Long;
Ying, Wenqin;
Li, Di;
Shi, Lei;
Sun, Yongsen;
Li, Yongyao;
Li, Yixue;
Sun, Yidi;
Zuo, Erwei

Publication type:

Article

CRISPR/Cas9-mediated targeted chromosome elimination.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1354-4

By:

Erwei Zuo;
Xiaona Huo;
Xuan Yao;
Xinde Hu;
Yidi Sun;
Jianhang Yin;
Bingbing He;
Xing Wang;
Linyu Shi;
Jie Ping;
Yu Wei;
Wenqin Ying;
Wei Wei;
Wenjia Liu;
Cheng Tang;
Yixue Li;
Jiazhi Hu;
Hui Yang

Publication type:

Article

A novel strategy for deciphering dynamic conservation of gene expression relationship.

Published in:

Journal of Molecular Cell Biology, 2012, v. 4, n. 3, p. 177, doi. 10.1093/jmcb/mjs014

By:

Yuan, Liyun;
Ding, Guohui;
Chen, Y. Eugene;
Chen, Zhe;
Li, Yixue

Publication type:

Article

Different developmental potential of pluripotent stem cells generated by different reprogramming strategies.

Published in:

Journal of Molecular Cell Biology, 2011, v. 3, n. 3, p. 197, doi. 10.1093/jmcb/mjr012

By:

Jiang, Jing;
Ding, Guohui;
Lin, Jiangwei;
Zhang, Man;
Shi, Linyu;
Lv, Wenjian;
Yang, Hui;
Xiao, Huasheng;
Pei, Gang;
Li, Yixue;
Wu, Jiarui;
Li, Jinsong

Publication type:

Article

Prioritising risk pathways of complex human diseases based on functional profiling.

Published in:

European Journal of Human Genetics, 2013, v. 21, n. 6, p. 666, doi. 10.1038/ejhg.2012.218

By:

Li, Yan;
Huang, Teng;
Xiao, Yun;
Ning, Shangwei;
Wang, Peng;
Wang, Qianghu;
Chen, Xin;
Chaohan, Xu;
Sun, Donglin;
Li, Xia;
Li, Yixue

Publication type:

Article

Exploration of gene–gene interaction effects using entropy-based methods.

Published in:

European Journal of Human Genetics, 2008, v. 16, n. 2, p. 229, doi. 10.1038/sj.ejhg.5201921

By:

Dong, Changzheng;
Chu, Xun;
Wang, Ying;
Wang, Yi;
Jin, Li;
Shi, Tieliu;
Huang, Wei;
Li, Yixue

Publication type:

Article

Using GeneReg to construct time delay gene regulatory networks.

Published in:

BMC Research Notes, 2010, v. 3, p. 142, doi. 10.1186/1756-0500-3-142

By:

Tao Huang;
Lei Liu;
Ziliang Qian;
Kang Tu;
Yixue Li;
Lu Xie

Publication type:

Article

Dissipative particle dynamics simulations of the viscosities of molten TNT and molten TNT suspensions containing nanoparticles.

Published in:

Journal of Molecular Modeling, 2016, v. 22, n. 9, p. 1, doi. 10.1007/s00894-016-3059-0

By:

Zhou, Yang;
Li, Yixue;
Qian, Wen;
He, Bi

Publication type:

Article

Rapid evolution of a retro-transposable hotspot of ovine genome underlies the alteration of BMP2 expression and development of fat tails.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5620-6

By:

Pan, Zhangyuan;
Li, Shengdi;
Liu, Qiuyue;
Wang, Zhen;
Zhou, Zhengkui;
Di, Ran;
An, Xuejiao;
Miao, Benpeng;
Wang, Xiangyu;
Hu, Wenping;
Guo, Xiaofei;
Lv, Shenjin;
Li, Fukuan;
Ding, Guohui;
Chu, Mingxing;
Li, Yixue

Publication type:

Article

Fast and accurate identification of semi-tryptic peptides in shotgun proteomics.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 102, doi. 10.1093/bioinformatics/btm545

By:

Pedro Alves;
Randy J. Arnold;
David E. Clemmer;
Yixue Li;
James P. Reilly;
Quanhu Sheng;
Haixu Tang;
Zhiyin Xun;
Rong Zeng;
Predrag Radivojac

Publication type:

Article

An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.

Published in:

Bioinformatics, 2007, v. 23, n. 18, p. 2449, doi. 10.1093/bioinformatics/btm348

By:

Ziliang Qian;
Lingyi Lu;
XiaoJun Liu;
Yu-Dong Cai;
Yixue Li

Publication type:

Article

Review of Predicting Synergistic Drug Combinations.

Published in:

Life (2075-1729), 2023, v. 13, n. 9, p. 1878, doi. 10.3390/life13091878

By:

Pan, Yichen;
Ren, Haotian;
Lan, Liang;
Li, Yixue;
Huang, Tao

Publication type:

Article

Considering Dependencies Amongst Genes Helps to Adjust the Significance Rank of DEGs.

Published in:

Chinese Journal of Chemistry, 2010, v. 28, n. 7, p. 1284, doi. 10.1002/cjoc.201090222

By:

Liu, Qi;
Ding, Guohui;
Huang, Tao;
Tan, Yejun;
Dai, Hongyue;
Xie, Lu;
Li, Yixue

Publication type:

Article

Comparative Transcriptomic Analysis of Primary Duck Hepatocytes Provides Insight into Differential Susceptibility to DHBV Infection.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149702

By:

Yan, Liang;
Qu, Su;
Liu, Gang;
Liu, Lei;
Yu, Yao;
Ding, Guohui;
Zhao, Yanfeng;
Li, Yixue;
Xie, Youhua;
Zhang, Junqi;
Qu, Di

Publication type:

Article

Identification of DNA methylation characteristics associated with metastasis and prognosis in colorectal cancer.

Published in:

BMC Medical Genomics, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s12920-024-01898-4

By:

Qian, Fang;
Li, Qiang;
Chang, Huidan;
Wei, Kai;
Chen, Xiaoyi;
Huang, Tao;
Li, Yixue

Publication type:

Article