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Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits.
- Published in:
- Molecular Biology & Evolution, 2022, v. 39, n. 8, p. 1, doi. 10.1093/molbev/msac163
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- Article
Rituximab‐to‐vaccine interval on SARS‐CoV‐2 immunogenicity in children: The potential role of prior natural infection.
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- Pediatric Allergy & Immunology, 2024, v. 35, n. 5, p. 1, doi. 10.1111/pai.14161
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- Article
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
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- PLoS Pathogens, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.ppat.1006895
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- Article
Hepatitis C treatment program in Maputo, Mozambique, the challenge of genotypes and key populations: A 5‐year retrospective analysis of routine programmatic data.
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- Health Science Reports, 2023, v. 6, n. 4, p. 1, doi. 10.1002/hsr2.1165
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- Article
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.28721
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- Article
Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19198-7
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- Article
Long-Term Trends of HIV Type 1 Drug Resistance Prevalence among Antiretroviral Treatment-Experienced Patients in Switzerland.
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- Clinical Infectious Diseases, 2009, v. 48, n. 7, p. 979, doi. 10.1086/597352
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- Article
Minority Quasispecies of Drug-Resistant HIV-1 That Lead to Early Therapy Failure in Treatment-Naive and -Adherent Patients.
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- Clinical Infectious Diseases, 2009, v. 48, n. 2, p. 239, doi. 10.1086/595703
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- Article
Factors Associated with the Emergence of K65R in Patients with HIV-1 Infection Treated with Combination Antiretroviral Therapy Containing Tenofovir.
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- Clinical Infectious Diseases, 2008, v. 46, n. 8, p. 1299, doi. 10.1086/528863
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- Article
A Randomized Trial of Simplified Maintenance Therapy with Abacavir, Lamivudine, and Zidovudine in Human Immunodeficiency Virus Infection.
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- Journal of Infectious Diseases, 2002, v. 185, n. 9, p. 1251
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- Article
Nosocomial Outbreak of Multiple Bloodborne Viral Infections.
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- Journal of Infectious Diseases, 2001, v. 184, n. 3, p. 369, doi. 10.1086/322036
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- Article
Codon 215 Mutations in Human Immunodeficiency Virus-Infected Pregnant Women.
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- Journal of Infectious Diseases, 1999, v. 179, n. 3, p. 705
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- Article
Virus Burden in Lymph Nodes and Blood of Subjects with Primary Human Immunodeficiency Virus Type 1 Infection on Bitherapy.
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- Journal of Infectious Diseases, 1998, v. 177, n. 6, p. 1497, doi. 10.1086/515303
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- Article
Prognostic Value of Viremia in Patients with Long-Standing Human Immunodeficiency Virus Infection.
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- Journal of Infectious Diseases, 1996, v. 173, n. 6, p. 1388, doi. 10.1093/infdis/173.6.1388
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- Article
Absence of Chronic Human Immunodeficiency Virus Infection without Seroconversion in Intravenous Drug Users: A Prospective and Retrospective Study.
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- Journal of Infectious Diseases, 1991, v. 164, n. 5, p. 965, doi. 10.1093/infdis/164.5.965
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- Article
Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL'HIV trial.
- Published in:
- 2020
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- Publication type:
- journal article
Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.
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- Journal of Antimicrobial Chemotherapy (JAC), 2023, v. 78, n. 3, p. 656, doi. 10.1093/jac/dkac430
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- Article
Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland.
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- 2019
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- journal article
Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland.
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- Journal of Antimicrobial Chemotherapy (JAC), 2019, v. 74, p. 468, doi. 10.1093/jac/dky436
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- Article
SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing.
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- Microorganisms, 2021, v. 9, n. 4, p. 677, doi. 10.3390/microorganisms9040677
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- Article
Detecting Selection in the HIV-1 Genome during Sexual Transmission Events.
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- Viruses (1999-4915), 2022, v. 14, n. 2, p. 406, doi. 10.3390/v14020406
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- Article
HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection.
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- Viruses (1999-4915), 2020, v. 12, n. 11, p. 1241, doi. 10.3390/v12111241
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- Article
Unusual primary HIV infection with colonic ulcer complicated by hemorrhagic shock: a case report.
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- 2010
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- Publication type:
- journal article
Higher Risk of Incident Hepatitis C Virus Coinfection Among Men Who Have Sex With Men, in Whom the HIV Genetic Bottleneck at Transmission Was Wide.
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- Journal of Infectious Diseases, 2014, v. 210, n. 10, p. 1555, doi. 10.1093/infdis/jiu315
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- Article
Origin of Minority Drug-Resistant HIV-1 Variants in Primary HIV-1 Infection.
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- Journal of Infectious Diseases, 2013, v. 208, n. 7, p. 1102, doi. 10.1093/infdis/jit310
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- Article
The Role of Migration and Domestic Transmission in the Spread of HIV-1 Non-B Subtypes in Switzerland.
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- Journal of Infectious Diseases, 2011, v. 204, n. 7, p. 1095, doi. 10.1093/infdis/jir491
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- Article
Predictors for the emergence of the 2 multi-nucleoside/nucleotide resistance mutations 69 insertion and Q151M and their impact on clinical outcome in the Swiss HIV cohort study.
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- 2011
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- journal article
Predictors for the Emergence of the 2 Multi-nucleoside/nucleotide Resistance Mutations 69 Insertion and Q151M and their Impact on Clinical Outcome in the Swiss HIV Cohort Study.
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- Journal of Infectious Diseases, 2011, v. 203, n. 6, p. 791
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- Publication type:
- Article
Molecular Epidemiology Reveals Long-Term Changes in HIV Type 1 Subtype B Transmission in Switzerland.
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- Journal of Infectious Diseases, 2010, v. 201, n. 10, p. 1488, doi. 10.1086/651951
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- Article
Epidemiological and Biological Evidence for a Compensatory Effect of Connection Domain Mutation N348I on M184V in HIV-1 Reverse Transcriptase.
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- Journal of Infectious Diseases, 2010, v. 201, n. 7, p. 1054, doi. 10.1086/651168
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- Article
Lower Respiratory Viral Illnesses.
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- American Journal of Respiratory & Critical Care Medicine, 2004, v. 170, n. 11, p. 1197, doi. 10.1164/rccm.200406-781OC
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- Article
Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals--the Swiss HIV Cohort Study.
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- 2011
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- Publication type:
- journal article
Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals - the Swiss HIV Cohort Study.
- Published in:
- Journal of Translational Medicine, 2011, v. 9, n. 1, p. 1, doi. 10.1186/1479-5876-9-14
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- Article
Persistence of Transmitted HIV-1 Drug Resistance Mutations Associated with Fitness Costs and Viral Genetic Backgrounds.
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- PLoS Pathogens, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.ppat.1004722
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- Article
Assessing Predicted HIV-1 Replicative Capacity in a Clinical Setting.
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- PLoS Pathogens, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.ppat.1002321
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- Article
The Individualized Genetic Barrier Predicts Treatment Response in a Large Cohort of HIV-1 Infected Patients.
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- PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003203
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- Article
Inferring Epidemic Contact Structure from Phylogenetic Trees.
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- PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002413
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- Article
Large-scale inference of conjunctive Bayesian networks.
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- Bioinformatics, 2016, v. 32, n. 17, p. i727, doi. 10.1093/bioinformatics/btw459
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- Article
Identification of immunodominant linear epitopes from SARS-CoV-2 patient plasma.
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- PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0238089
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- Article
Increased Incidence of Sexually Transmitted Infections in Geneva, Switzerland.
- Published in:
- Dermatology (10188665), 2006, v. 212, n. 1, p. 41, doi. 10.1159/000089021
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- Article
Antiretroviral-treated HIV-1 patients can harbour resistant viruses in CSF despite an undetectable viral load in plasma.
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- 2017
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- Publication type:
- journal article
Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study.
- Published in:
- 2015
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- Publication type:
- journal article
Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study.
- Published in:
- Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 12, p. 3323, doi. 10.1093/jac/dkv276
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- Publication type:
- Article
Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma.
- Published in:
- 2015
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- Publication type:
- Journal Article
Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL in 2009: a French nationwide study.
- Published in:
- 2013
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- Publication type:
- Journal Article
Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL in 2009: a French nationwide study.
- Published in:
- Journal of Antimicrobial Chemotherapy (JAC), 2013, v. 68, n. 6, p. 1400
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- Publication type:
- Article
HIV-1-infected patients from the French National Observatory experiencing virological failure while receiving enfuvirtide.
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- Journal of Antimicrobial Chemotherapy (JAC), 2008, v. 62, n. 3, p. 451
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- Publication type:
- Article
SARS-CoV-2 m-RNA Vaccine Response in Immunocompromised Patients: A Monocentric Study Comparing Cancer, People Living with HIV, Hematopoietic Stem Cell Transplant Patients and Lung Transplant Recipients.
- Published in:
- Vaccines, 2023, v. 11, n. 8, p. 1284, doi. 10.3390/vaccines11081284
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- Article
Impact on HIV-1 RNA Levels and Antibody Responses Following SARS-CoV-2 Vaccination in HIV-Infected Individuals.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2021.820126
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- Article
Autoantibodies against apolipoprotein A‐1 after COVID‐19 predict symptoms persistence.
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- European Journal of Clinical Investigation, 2022, v. 52, n. 10, p. 1, doi. 10.1111/eci.13818
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- Article