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Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-12326-x
By:
- Barchenger, Derek W.;
- Hsu, Yu-ming;
- Ou, Jheng-yang;
- Lin, Ya-ping;
- Lin, Yao-cheng;
- Balendres, Mark Angelo O.;
- Hsu, Yun-che;
- Schafleitner, Roland;
- Hanson, Peter
Publication type:
Article
Transgene‐free CRISPR/Cas9‐mediated gene editing through protoplast‐to‐plant regeneration enhances active compounds in Salvia miltiorrhiza.
Published in:
Plant Biotechnology Journal, 2024, v. 22, n. 6, p. 1549, doi. 10.1111/pbi.14285
By:
- Hsu, Chen‐Tran;
- Chiu, Chi‐Chou;
- Hsiao, Pao‐Yuan;
- Lin, Chih‐Yu;
- Cheng, Sychyi;
- Lin, Yao‐Cheng;
- Yang, Yu‐Liang;
- Wu, Fu‐Hui;
- Harn, Horng‐Jyh;
- Lin, Shinn‐Zong;
- Lin, Choun‐Sea
Publication type:
Article
Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.
Published in:
Journal of Experimental Botany, 2015, v. 66, n. 17, p. 5257, doi. 10.1093/jxb/erv346
By:
- Ghorbani, Sarieh;
- Yao-Cheng Lin;
- Parizot, Boris;
- Fernandez, Ana;
- Njo, Maria Fransiska;
- de Peer, Yves Van;
- Beeckman, Tom;
- Hilson, Pierre
Publication type:
Article
Genome sequence of the recombinant protein production host Pichia pastoris.
Published in:
Nature Biotechnology, 2009, v. 27, n. 6, p. 561, doi. 10.1038/nbt.1544
By:
- De Schutter, Kristof;
- Yao-Cheng Lin;
- Tiels, Petra;
- Hecke, Annelies Van;
- Glinka, Sascha;
- Weber-Lehmann, Jacqueline;
- Rouzé, Pierre;
- De Peer, Yves Van;
- Callewaert, Nico
Publication type:
Article
Toward automatic plant phenotyping: starting from leaf counting.
Published in:
Multimedia Tools & Applications, 2022, v. 81, n. 9, p. 11865, doi. 10.1007/s11042-021-11886-w
By:
- Tu, Yi-Lin;
- Lin, Wei-Yang;
- Lin, Yao-Cheng
Publication type:
Article
Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp. citri.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.731711
By:
- Huang, Chien-Jui;
- Wu, Ting-Li;
- Zheng, Po-Xing;
- Ou, Jheng-Yang;
- Ni, Hui-Fang;
- Lin, Yao-Cheng
Publication type:
Article
Systems genetics reveals a transcriptional network associated with susceptibility in the maize-grey leaf spot pathosystem.
Published in:
Plant Journal, 2017, v. 89, n. 4, p. 746, doi. 10.1111/tpj.13419
By:
- Christie, Nanette;
- Myburg, Alexander A.;
- Joubert, Fourie;
- Murray, Shane L.;
- Carstens, Maryke;
- Lin, Yao‐Cheng;
- Meyer, Jacqueline;
- Crampton, Bridget G.;
- Christensen, Shawn A.;
- Ntuli, Jean F.;
- Wighard, Sara S.;
- Van de Peer, Yves;
- Berger, Dave K.
Publication type:
Article
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0139080
By:
- Delhomme, Nicolas;
- Sundström, Görel;
- Zamani, Neda;
- Lantz, Henrik;
- Lin, Yao-Cheng;
- Hvidsten, Torgeir R.;
- Höppner, Marc P.;
- Jern, Patric;
- Van de Peer, Yves;
- Lundeberg, Joakim;
- Grabherr, Manfred G.;
- Street, Nathaniel R.
Publication type:
Article
Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera.
Published in:
BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12870-014-0220-8
By:
- Ranade, Sonali Sachin;
- Yao-Cheng Lin;
- Zuccolo, Andrea;
- Van de Peer, Yves;
- del Rosario García-Gil, María
Publication type:
Article
Candida bombicola as a platform organism for the production of tailor-made biomolecules.
Published in:
Biotechnology & Bioengineering, 2013, v. 110, n. 9, p. 2494, doi. 10.1002/bit.24895
By:
- Roelants, Sophie L.K.W.;
- Saerens, Karen M.J.;
- Derycke, Thibaut;
- Li, Bing;
- Lin, Yao‐Cheng;
- Van de Peer, Yves;
- De Maeseneire, Sofie L.;
- Van Bogaert, Inge N.A.;
- Soetaert, Wim
Publication type:
Article
The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola.
Published in:
Molecular Microbiology, 2013, v. 88, n. 3, p. 501, doi. 10.1111/mmi.12200
By:
- Van Bogaert, Inge N. A.;
- Holvoet, Kevin;
- Roelants, Sophie L. K. W.;
- Li, Bing;
- Lin, Yao‐Cheng;
- Van de Peer, Yves;
- Soetaert, Wim
Publication type:
Article
A rice phenomics studyâphenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population.
Published in:
Plant Molecular Biology, 2007, v. 65, n. 4, p. 427, doi. 10.1007/s11103-007-9218-z
By:
- Chyr-Guan Chern;
- Su-May Yu;
- Ai-Ling Hour;
- Po-Chang Lu;
- Yao-Cheng Lin;
- Fu-Jin Wei;
- Sheng-Chung Huang;
- Shu Chen;
- Ming-Hsing Lai;
- Ching-Shan Tseng;
- Hsing-Mu Yen;
- Woei-Shyuan Jwo;
- Chen-Chia Wu;
- Tung-Lung Yang;
- Lung-Sheng Li;
- Yih-Cheng Kuo;
- Su-Mien Li;
- Charng-Pei Li;
- Chiu-Kai Wey;
- Arunee Trisiriroj
Publication type:
Article
A rice gene activation/knockout mutant resource for high throughput functional genomics.
Published in:
Plant Molecular Biology, 2007, v. 63, n. 3, p. 351, doi. 10.1007/s11103-006-9093-z
By:
- Yue-Ie Hsing;
- Chyr-Guan Chern;
- Ming-Jen Fan;
- Po-Chang Lu;
- Ku-Ting Chen;
- Peng-Kai Sun;
- Shin-Lon Ho;
- Kuo-Wei Lee;
- Yi-Chieh Wang;
- Wen-Lii Huang;
- Swee-Suak Ko;
- Shu Chen;
- Jyh-Long Chen;
- Chun-I Chung;
- Yao-Cheng Lin;
- Ai-Ling Hour;
- Yet-Walt Wang;
- Ya-Chi Chang;
- Min-Wei Tsai;
- Yi-Show Lin
Publication type:
Article
Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47789-y
By:
- Rodrigues, Andreia S.;
- Chaves, Inês;
- Costa, Bruno Vasques;
- Lin, Yao-Cheng;
- Lopes, Susana;
- Milhinhos, Ana;
- Van de Peer, Yves;
- Miguel, Célia M.
Publication type:
Article
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips.
Published in:
IMA Fungus, 2017, v. 8, n. 2, p. 385, doi. 10.5598/imafungus.2017.08.02.10
By:
- Wingfield, Brenda D.;
- Berger, Dave K.;
- Steenkamp, Emma T.;
- Hye-Jin Lim;
- Duong, Tuan A.;
- Bluhm, Burton H.;
- De Beer, Z. Wilhelm;
- De Vos, Lieschen;
- Fourie, G.;
- Naidoo, Kershney;
- Olivier, Nicky;
- Yao-Cheng Lin;
- Van De Peer, Yves;
- Joubert, Fourie;
- Crampton, Bridget G.;
- Swart, Velushka;
- Soal, Nicole;
- Tatham, Catherine;
- Van Der Nest, Magriet A.;
- Van Der Merwe, Nicolaas A.
Publication type:
Article
Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine Pinus taeda).
Published in:
BMC Genetics, 2015, v. 16, p. 1, doi. 10.1186/s12863-015-0304-y
By:
- Ranade, Sonali Sachin;
- Yao-Cheng Lin;
- Van de Peer, Yves;
- García-Gil, María Rosario
Publication type:
Article
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.
Published in:
Nature Communications, 2014, v. 5, n. 9, p. 4767, doi. 10.1038/ncomms5767
By:
- Lin, Yao-Cheng;
- Boone, Morgane;
- Meuris, Leander;
- Lemmens, Irma;
- Van Roy, Nadine;
- Soete, Arne;
- Reumers, Joke;
- Moisse, Matthieu;
- Plaisance, Stéphane;
- Drmanac, Radoje;
- Chen, Jason;
- Speleman, Frank;
- Lambrechts, Diether;
- Van de Peer, Yves;
- Tavernier, Jan;
- Callewaert, Nico
Publication type:
Article
Genome-Wide Analysis Reveals Diverged Patterns of Codon Bias, Gene Expression, and Rates of Sequence Evolution in Picea Gene Families.
Published in:
Genome Biology & Evolution, 2015, v. 7, n. 4, p. 1002, doi. 10.1093/gbe/evv044
By:
- De La Torre, Amanda R.;
- Yao-Cheng Lin;
- Van de Peer, Yves;
- Ingvarsson, Pär K.
Publication type:
Article
Pan genome of the phytoplankton Emiliania underpins its global distribution.
Published in:
Nature, 2013, v. 499, n. 7457, p. 209, doi. 10.1038/nature12221
By:
- Read, Betsy A.;
- Kegel, Jessica;
- Klute, Mary J.;
- Kuo, Alan;
- Lefebvre, Stephane C.;
- Maumus, Florian;
- Mayer, Christoph;
- Miller, John;
- Monier, Adam;
- Salamov, Asaf;
- Young, Jeremy;
- Aguilar, Maria;
- Claverie, Jean-Michel;
- Frickenhaus, Stephan;
- Gonzalez, Karina;
- Herman, Emily K.;
- Lin, Yao-Cheng;
- Napier, Johnathan;
- Ogata, Hiroyuki;
- Sarno, Analissa F.
Publication type:
Article
The Norway spruce genome sequence and conifer genome evolution.
Published in:
Nature, 2013, v. 497, n. 7451, p. 579, doi. 10.1038/nature12211
By:
- Nystedt, Björn;
- Street, Nathaniel R.;
- Wetterbom, Anna;
- Zuccolo, Andrea;
- Lin, Yao-Cheng;
- Scofield, Douglas G.;
- Vezzi, Francesco;
- Delhomme, Nicolas;
- Giacomello, Stefania;
- Alexeyenko, Andrey;
- Vicedomini, Riccardo;
- Sahlin, Kristoffer;
- Sherwood, Ellen;
- Elfstrand, Malin;
- Gramzow, Lydia;
- Holmberg, Kristina;
- Hällman, Jimmie;
- Keech, Olivier;
- Klasson, Lisa;
- Koriabine, Maxim
Publication type:
Article
DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration.
Published in:
Plant Physiology, 2022, v. 188, n. 4, p. 1917, doi. 10.1093/plphys/kiac022
By:
- Choun-Sea Lin;
- Chen-Tran Hsu;
- Yu-Hsuan Yuan;
- Po-Xing Zheng;
- Fu-Hui Wu;
- Qiao-Wei Cheng;
- Yu-Lin Wu;
- Ting-Li Wu;
- Lin, Steven;
- Jin-Jun Yue;
- Ying-Huey Cheng;
- Shu-I Lin;
- Ming-Che Shih;
- Jen Sheen;
- Yao-Cheng Lin
Publication type:
Article
miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns.
Published in:
Tree Genetics & Genomes, 2014, v. 10, n. 3, p. 721, doi. 10.1007/s11295-014-0717-1
By:
- Chaves, Inês;
- Lin, Yao-Cheng;
- Pinto-Ricardo, C.;
- Van de Peer, Yves;
- Miguel, Célia
Publication type:
Article
Reference genome and comparative genome analysis for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5909-5
By:
- Borgers, Katlyn;
- Ou, Jheng-Yang;
- Zheng, Po-Xing;
- Tiels, Petra;
- Van Hecke, Annelies;
- Plets, Evelyn;
- Michielsen, Gitte;
- Festjens, Nele;
- Callewaert, Nico;
- Lin, Yao-Cheng
Publication type:
Article
The Plant Genome Integrative Explorer Resource: PlantGen IE.org.
Published in:
New Phytologist, 2015, v. 208, n. 4, p. 1149, doi. 10.1111/nph.13557
By:
- Sundell, David;
- Mannapperuma, Chanaka;
- Netotea, Sergiu;
- Delhomme, Nicolas;
- Lin, Yao‐Cheng;
- Sjödin, Andreas;
- Van de Peer, Yves;
- Jansson, Stefan;
- Hvidsten, Torgeir R.;
- Street, Nathaniel R.
Publication type:
Article
Development and implementation of a highlymultiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 368, doi. 10.1186/1471-2164-12-368
By:
- Chancerel, Emilie;
- Lepoittevin, Camille;
- Le Provost, Grégoire;
- Yao-Cheng Lin;
- Jaramillo-Correa, Juan Pablo;
- Eckert, Andrew J.;
- Wegrzyn, Jill L.;
- Zelenika, Diana;
- Boland, Anne;
- Frigerio, Jean-Marc;
- Chaumeil, Philippe;
- Garnier-Géré, Pauline;
- Boury, Christophe;
- Grivet, Delphine;
- González-Martínez, Santiago C.;
- Rouzé, Pierre;
- Van de Peer, Yves;
- Neale, David B.;
- Cervera, Maria T.;
- Kremer, Antoine
Publication type:
Article

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