Works by Yao, Qiuming

Results: 42

MicroRNA-22-3p as a novel regulator and therapeutic target for autoimmune diseases.

Published in:

International Reviews of Immunology, 2017, v. 36, n. 3, p. 176, doi. 10.1080/08830185.2017.1281272

By:

Wang, Bin;
Yao, Qiuming;
Xu, Donghua;
Zhang, Jin-an

Publication type:

Article

P³DB: an integrated database for plant protein phosphorylation.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00206

By:

Qiuming Yao;
Bollinger, Curtis;
Jianjiong Gao;
Dong Xu;
Thelen, Jay J.

Publication type:

Article

Predicting and analyzing protein phosphorylation sites in plants using Musite.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00186

By:

Qiuming Yao;
Jianjiong Gao;
Bollinger, Curtis;
Thelen, Jay J.;
Dong Xu

Publication type:

Article

P3DB: An Integrated Database for Plant Protein Phosphorylation.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00206

By:

Qiuming Yao;
Jianjiong Gao;
Dong Xu;
Thelen, Jay J.

Publication type:

Article

Predicting and analyzing protein phosphorylation sites in plants using Musite.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00186

By:

Qiuming Yao;
Jianjiong Gao;
Bollinger, Curtis;
Thelen, Jay;
Dong Xu

Publication type:

Article

IRF7 Gene Variations Confer Susceptibility to Autoimmune Thyroid Diseases and Graves' Ophthalmopathy.

Published in:

International Journal of Endocrinology, 2019, p. 1, doi. 10.1155/2019/7429187

By:

Yao, Qiuming;
An, Xiaofei;
Zhang, Jing;
Mu, Kaida;
Li, Ling;
Song, Ronghua;
Sun, Peilong;
Zhang, Jin-an

Publication type:

Article

Motif-Raptor: a cell type-specific and transcription factor centric approach for post-GWAS prioritization of causal regulators.

Published in:

Bioinformatics, 2021, v. 37, n. 15, p. 2103, doi. 10.1093/bioinformatics/btab072

By:

Yao, Qiuming;
Ferragina, Paolo;
Reshef, Yakir;
Lettre, Guillaume;
Bauer, Daniel E;
Pinello, Luca

Publication type:

Article

CellMarkerPipe: cell marker identification and evaluation pipeline in single cell transcriptomes.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63492-z

By:

Jia, Yinglu;
Ma, Pengchong;
Yao, Qiuming

Publication type:

Article

Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02706

By:

Li, Zhou;
Yao, Qiuming;
Guo, Xuan;
Crits-Christoph, Alexander;
Mayes, Melanie A.;
IV, William Judson Hervey;
Lebeis, Sarah L.;
Banfield, Jillian F.;
Hurst, Gregory B.;
Hettich, Robert L.;
Pan, Chongle

Publication type:

Article

CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1563-5

By:

Schoonenberg, Vivien A. C.;
Cole, Mitchel A.;
Qiuming Yao;
Macias-Treviño, Claudio;
Sher, Falak;
Schupp, Patrick G.;
Canver, Matthew C.;
Takahiro Maeda;
Pinello, Luca;
Bauer, Daniel E.

Publication type:

Article

Genetic Variants in TMEM39A Gene Are Associated with Autoimmune Thyroid Diseases.

Published in:

DNA & Cell Biology, 2019, v. 38, n. 11, p. 1249, doi. 10.1089/dna.2019.4872

By:

Yao, Qiuming;
Wang, Bin;
Qin, Qiu;
Jia, Xi;
Li, Ling;
Zhang, Jin-an

Publication type:

Article

Aberrant Expressions of Co-stimulatory and Co-inhibitory Molecules in Autoimmune Diseases.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00261

By:

He, Weiwei;
Wang, Bin;
Li, Qian;
Yao, Qiuming;
Jia, Xi;
Song, Ronghua;
Li, Sheli;
Zhang, Jin-an

Publication type:

Article

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1041, doi. 10.1111/1462-2920.13605

By:

Li, Zhou;
Yao, Qiuming;
Dearth, Stephen P.;
Entler, Matthew R.;
Castro Gonzalez, Hector F.;
Uehling, Jessie K.;
Vilgalys, Rytas J.;
Hurst, Gregory B.;
Campagna, Shawn R.;
Labbé, Jessy L.;
Pan, Chongle

Publication type:

Article

Circulating microRNA-144-3p and miR-762 are novel biomarkers of Graves' disease.

Published in:

Endocrine (1355008X), 2019, v. 65, n. 1, p. 102, doi. 10.1007/s12020-019-01884-2

By:

Yao, Qiuming;
Wang, Xuan;
He, Weiwei;
Song, Zhenyu;
Wang, Bin;
Zhang, Jinan;
Qin, Qiu

Publication type:

Article

Diabetes self-management education reduces risk of all-cause mortality in type 2 diabetes patients: a systematic review and meta-analysis.

Published in:

Endocrine (1355008X), 2017, v. 55, n. 3, p. 712, doi. 10.1007/s12020-016-1168-2

By:

He, Xiaoqin;
Li, Jie;
Wang, Bin;
Yao, Qiuming;
Li, Ling;
Song, Ronghua;
Shi, Xiaohong;
Zhang, Jin-an

Publication type:

Article

Sipros Ensemble improves database searching and filtering for complex metaproteomics.

Published in:

Bioinformatics, 2018, v. 34, n. 5, p. 795, doi. 10.1093/bioinformatics/btx601

By:

Guo, Xuan;
Li, Zhou;
Yao, Qiuming;
Mueller, Ryan S;
Eng, Jimmy K;
Tabb, David L;
Hervey, William Judson;
Pan, Chongle

Publication type:

Article

Decoding Arabidopsis thaliana CPK/SnRK Superfamily Kinase Client Signaling Networks Using Peptide Library and Mass Spectrometry.

Published in:

Plants (2223-7747), 2024, v. 13, n. 11, p. 1481, doi. 10.3390/plants13111481

By:

Ahsan, Nagib;
Kataya, Amr R. A.;
Rao, R. Shyama Prasad;
Swatek, Kirby N.;
Wilson, Rashaun S.;
Meyer, Louis J.;
Tovar-Mendez, Alejandro;
Stevenson, Severin;
Maszkowska, Justyna;
Dobrowolska, Grazyna;
Yao, Qiuming;
Xu, Dong;
Thelen, Jay J.

Publication type:

Article

HLA-DRA Gene Polymorphisms Are Associated with Graves' Disease as an Autoimmune Thyroid Disease.

Published in:

BioMed Research International, 2022, p. 1, doi. 10.1155/2022/6839634

By:

Du, Peng;
Zhu, Jiaoli;
Yao, Qiuming;
Cai, Tiantian;
Xu, Jianbin;
Fang, Yudie;
Wu, Yuqing;
Zhang, Wen;
Zhang, Jin-an

Publication type:

Article

Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52599-3

By:

Song, Li;
Chen, Wei;
Yao, Qiuming;
Guo, Binhui;
Valliyodan, Babu;
Wang, Zhiyong;
Nguyen, Henry T.

Publication type:

Article

Profiling a Community-Specific Function Landscape for Bacterial Peptides Through Protein-Level Meta-Assembly and Machine Learning.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.935351

By:

Vajjala, Mitra;
Johnson, Brady;
Kasparek, Lauren;
Leuze, Michael;
Qiuming Yao

Publication type:

Article

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S15

By:

Joshi, Trupti;
Patil, Kapil;
Fitzpatrick, Michael R.;
Franklin, Levi D.;
Yao, Qiuming;
Cook, Jeffrey R.;
Wang, Zheng;
Libault, Marc;
Brechenmacher, Laurent;
Valliyodan, Babu;
Wu, Xiaolei;
Cheng, Jianlin;
Stacey, Gary;
Nguyen, Henry T.;
Xu, Dong

Publication type:

Article

Increased interleukin-9 and Th9 cells in patients with refractory Graves' disease and interleukin-9 polymorphisms are associated with autoimmune thyroid diseases.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1341749

By:

Qiuming Yao;
Zhenyu Song;
Bin Wang;
Peng Du;
Qiu Qin;
Jing Zhao;
Jin-an Zhang

Publication type:

Article

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community.

Published in:

Nature Communications, 2014, v. 5, n. 7, p. 4405, doi. 10.1038/ncomms5405

By:

Li, Zhou;
Wang, Yingfeng;
Yao, Qiuming;
Justice, Nicholas B.;
Ahn, Tae-Hyuk;
Xu, Dong;
Hettich, Robert L.;
Banfield, Jillian F.;
Pan, Chongle

Publication type:

Article

U-shaped relationship between iodine status and thyroid autoimmunity risk in adults.

Published in:

European Journal of Endocrinology, 2019, v. 181, n. 3, p. 255, doi. 10.1530/EJE-19-0212

By:

Bin Wang;
Weiwei He;
Qian Li;
Xi Jia;
Qiuming Yao;
Ronghua Song;
Qiu Qin;
Jin-an Zhang

Publication type:

Article

Association between dietary patterns and chronic kidney disease in elderly patients with type 2 diabetes: a community-based cross-sectional study.

Published in:

Nutrition Journal, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12937-024-01070-9

By:

Cao, Ling;
Yu, Peng;
Zhang, Lei;
Yao, Qiuming;
Zhou, Fang;
Li, Xiaoying;
Li, Xiaomu

Publication type:

Article

Systemic Proteomic Analysis Reveals Distinct Exosomal Protein Profiles in Rheumatoid Arthritis.

Published in:

2021

By:

Qin, Qiu;
Song, Ronghua;
Du, Peng;
Gao, Chaoqun;
Yao, Qiuming;
Zhang, Jin-an

Publication type:

journal article

P3DB 3.0: From plant phosphorylation sites to protein networks.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D1206, doi. 10.1093/nar/gkt1135

By:

Yao, Qiuming;
Ge, Huangyi;
Wu, Shangquan;
Zhang, Ning;
Chen, Wei;
Xu, Chunhui;
Gao, Jianjiong;
Thelen, Jay J.;
Xu, Dong

Publication type:

Article

Decreased number and impaired function of type 1 regulatory T cells in autoimmune diseases.

Published in:

Journal of Cellular Physiology, 2019, v. 234, n. 8, p. 12442, doi. 10.1002/jcp.28092

By:

Jia, Xi;
Zhai, Tianyu;
Wang, Bing;
Yao, Qiuming;
Li, Qian;
Mu, Kaida;
Zhang, Jin‐an

Publication type:

Article

Bioinformatics and biomedical informatics with ChatGPT: Year one review.

Published in:

Quantitative Biology, 2024, v. 12, n. 4, p. 345, doi. 10.1002/qub2.67

By:

Wang, Jinge;
Cheng, Zien;
Yao, Qiuming;
Liu, Li;
Xu, Dong;
Hu, Gangqing

Publication type:

Article

Increased Human Interleukin-32 Expression Is Related to Disease Activity of Graves' Disease.

Published in:

Frontiers in Endocrinology, 2019, p. N.PAG, doi. 10.3389/fendo.2019.00613

By:

Yao, Qiuming;
Wang, Bin;
Jia, Xi;
Li, Qian;
Yao, Wei;
Zhang, Jin-an

Publication type:

Article

Variations in CD14 Gene Are Associated With Autoimmune Thyroid Diseases in the Chinese Population.

Published in:

Frontiers in Endocrinology, 2019, p. N.PAG, doi. 10.3389/fendo.2018.00811

By:

Jia, Xi;
Wang, Bing;
Yao, Qiuming;
Li, Qian;
Zhang, Jinan

Publication type:

Article

CRISPR-Cas9 Screen Identifies XPO7 as a Novel Therapeutic Target for TP53-Mutated AML.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. S224, doi. 10.1016/j.clml.2019.07.102

By:

Semba, Yuchiro;
Yamauchi, Takuji;
Nakao, Fumihiko;
Nogami, Junpei;
Yao, Qiuming;
Canver, Matthew;
Pinello, Luca;
Bauer, Daniel;
Akashi, Koichi;
Takahiro, Maeda

Publication type:

Article

Genome-Wide CRISPR Screen Identifies PAICS, An Enzyme Involved in De Novo Purine Synthesis, As a Potential Target for AML Therapy.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. S216, doi. 10.1016/j.clml.2019.07.088

By:

Yamauchi, Takuji;
Miyawaki, Kohta;
Semba, Yuichiro;
Nakao, Fumihiko;
Sugio, Takeshi;
Sasaki, Kensuke;
Nogami, Junpei;
Schoonenberg, Vivien A.C.;
Cole, Mitchel A.;
Macias-Trevino, Claudio;
Yao, Qiuming;
Canver, Matthew C.;
Osborne, Simon;
Pinello, Luca;
Taylor, Debbie;
Bauer, Daniel E.;
Akashi, Koichi;
Takahiro, Maeda

Publication type:

Article

Polymorphisms of IKZF3 Gene and Autoimmune Thyroid Diseases: Associated with Graves’ Disease but Not with Hashimoto’s Thyroiditis.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2018, v. 45, n. 5, p. 1787, doi. 10.1159/000487870

By:

Li, Ling;
Ding, Xiaolian;
Wang, Xuan;
Yao, Qiuming;
Shao, Xiaoqing;
An, Xiaofei;
Yan, Ni;
Jiang, Yanfei;
Wang, Wen;
Shi, Liangfeng;
Qin, Qiu;
Song, Ronghua;
Zhang, Jin-an;
Sun, Peilong

Publication type:

Article

Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq.

Published in:

Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.01044

By:

Wei Chen;
Qiuming Yao;
Patil, Gunvant B.;
Agarwal, Gaurav;
Deshmukh, Rupesh K.;
Li Lin;
Biao Wang;
Yongqin Wang;
Prince, Silvas J.;
Li Song;
Dong Xu;
An, Yongqiang C.;
Valliyodan, Babu;
Varshney, Rajeev K.;
Nguyen, Henry T.

Publication type:

Article

Identifying Key Genes and Functionally Enriched Pathways in Sjögren's Syndrome by Weighted Gene Co-Expression Network Analysis.

Published in:

Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01142

By:

Yao, Qiuming;
Song, Zhenyu;
Wang, Bin;
Qin, Qiu;
Zhang, Jin-an

Publication type:

Article

Sex Differences in the Associations of Obesity With Hypothyroidism and Thyroid Autoimmunity Among Chinese Adults.

Published in:

Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.01397

By:

Wang, Bin;
Song, Ronghua;
He, Weiwei;
Yao, Qiuming;
Li, Qian;
Jia, Xi;
Zhang, Jin-an

Publication type:

Article

Relationship between Hypothyroidism and Non-Alcoholic Fatty Liver Disease: A Systematic Review and Meta-analysis.

Published in:

Frontiers in Endocrinology, 2017, p. 1, doi. 10.3389/fendo.2017.00335

By:

Weiwei He;
Xiaofei An;
Ling Li;
Xiaoqing Shao;
Qian Li;
Qiuming Yao;
Jin-an Zhang

Publication type:

Article

Antibiotic Exposure in Early Life Increases Risk of Childhood Obesity: A Systematic Review and Meta-Analysis.

Published in:

Frontiers in Endocrinology, 2017, p. 1, doi. 10.3389/fendo.2017.00170

By:

Xiaoqing Shao;
Xiaolian Ding;
Bin Wang;
Ling Li;
Xiaofei An;
Qiuming Yao;
Ronghua Song;
Jin-an Zhang

Publication type:

Article

Deletion of murine Rhoh leads to de-repression of Bcl-6 via decreased KAISO levels and accelerates a malignancy phenotype in a murine model of lymphoma.

Published in:

Small GTPases, 2022, v. 13, n. 1, p. 267, doi. 10.1080/21541248.2021.2019503

By:

Horiguchi, Hiroto;
Xu, Haiming;
Duvert, Beatrice;
Ciuculescu, Felicia;
Yao, Qiuming;
Sinha, Amit;
McGuinness, Meaghan;
Harris, Chad;
Brendel, Christian;
Troeger, Anja;
Chiarle, Roberto;
Williams, David A.

Publication type:

Article

Letter to the Editor: Patients With Autoimmune Thyroiditis Show Diminished Levels and Defective Suppressive Function of Tr1 Regulatory Lymphocytes.

Published in:

2019

By:

Jia, Xi;
Zhai, Tianyu;
Yao, Qiuming;
Zhang, Jin-An

Publication type:

Letter

A case--control study of selenoprotein genes polymorphisms and autoimmune thyroid diseases in a Chinese population.

Published in:

BMC Medical Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12881-017-0415-6

By:

Ling Xiao;
Jianghong Yuan;
Qiuming Yao;
Ni Yan;
Ronghua Song;
Wenjuan Jiang;
Danfeng Li;
Liangfeng Shi;
Jin-an Zhang

Publication type:

Article