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GPSFun: geometry-aware protein sequence function predictions with language models.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W248, doi. 10.1093/nar/gkae381
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- Publication type:
- Article
A variational expectation-maximization framework for balanced multi-scale learning of protein and drug interactions.
- Published in:
- Nature Communications, 2024, p. 1, doi. 10.1038/s41467-024-48801-4
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- Publication type:
- Article
Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae163
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- Publication type:
- Article
Development of Chitosan-Based Films Incorporated with Chestnut Flower Essential Oil That Possess Good Anti-Ultraviolet Radiation and Antibacterial Effects for Banana Storage.
- Published in:
- Coatings (2079-6412), 2024, v. 14, n. 5, p. 548, doi. 10.3390/coatings14050548
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- Publication type:
- Article
Study on the Antifungal Activity of Gallic Acid and Its Azole Derivatives against Fusarium graminearum.
- Published in:
- Molecules, 2024, v. 29, n. 9, p. 1996, doi. 10.3390/molecules29091996
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- Publication type:
- Article
Genome-scale annotation of protein binding sites via language model and geometric deep learning.
- Published in:
- eLife, 2024, p. 1, doi. 10.7554/eLife.93695
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- Publication type:
- Article
Predicting the effects of mutations on protein solubility using graph convolution network and protein language model representation.
- Published in:
- Journal of Computational Chemistry, 2024, v. 45, n. 8, p. 436, doi. 10.1002/jcc.27249
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- Publication type:
- Article
An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome.
- Published in:
- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05716-7
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- Publication type:
- Article
EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D98, doi. 10.1093/nar/gkad1057
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- Publication type:
- Article
From intuition to AI: evolution of small molecule representations in drug discovery.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1093/bib/bbad422
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- Publication type:
- Article
Subgraph extraction and graph representation learning for single cell Hi-C imputation and clustering.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1093/bib/bbad379
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- Publication type:
- Article
Genome-wide association and Mendelian randomization analysis provide insights into the shared genetic architecture between high-dimensional electrocardiographic features and ischemic heart disease.
- Published in:
- Human Genetics, 2024, v. 143, n. 1, p. 49, doi. 10.1007/s00439-023-02614-5
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- Publication type:
- Article
Tri©DB: an integrated platform of knowledgebase and reporting system for cancer precision medicine.
- Published in:
- Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04773-5
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- Publication type:
- Article
Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 6, p. 1, doi. 10.1093/bib/bbad360
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- Publication type:
- Article
Effect of Chestnut (Castanea Mollissima Blume) Bur Polyphenol Extract on Shigella dysenteriae : Antibacterial Activity and the Mechanism.
- Published in:
- Molecules, 2023, v. 28, n. 19, p. 6990, doi. 10.3390/molecules28196990
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- Publication type:
- Article
Transcriptome analysis of differential sugar accumulation in the developing embryo of contrasting two Castanea mollissima cultivars.
- Published in:
- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1206585
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- Publication type:
- Article
Fast and accurate protein intrinsic disorder prediction by using a pretrained language model.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 4, p. 1, doi. 10.1093/bib/bbad173
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- Publication type:
- Article
Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad117
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- Publication type:
- Article
Identifying spatial domain by adapting transcriptomics with histology through contrastive learning.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad048
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- Publication type:
- Article
EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac583
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- Publication type:
- Article
Pyrus ussuriensis Maxim 70% ethanol eluted fraction ameliorates inflammation and oxidative stress in LPS‐induced inflammation in vitro and in vivo.
- Published in:
- Food Science & Nutrition, 2023, v. 11, n. 1, p. 458, doi. 10.1002/fsn3.3077
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- Publication type:
- Article
Mendelian randomization suggests a potential causal effect of eosinophil count on influenza vaccination responsiveness.
- Published in:
- Journal of Medical Virology, 2023, v. 95, n. 1, p. 1, doi. 10.1002/jmv.28394
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- Publication type:
- Article
Fuc-S—A New Ultrasonic Degraded Sulfated α-l-Fucooligosaccharide—Alleviates DSS-Inflicted Colitis through Reshaping Gut Microbiota and Modulating Host–Microbe Tryptophan Metabolism.
- Published in:
- Marine Drugs, 2023, v. 21, n. 1, p. 16, doi. 10.3390/md21010016
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- Publication type:
- Article
Effect of Ultrasonic Irradiation on the Physicochemical and Structural Properties of Laminaria japonica Polysaccharides and Their Performance in Biological Activities.
- Published in:
- Molecules, 2023, v. 28, n. 1, p. 8, doi. 10.3390/molecules28010008
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- Publication type:
- Article
A narrative review on conformational structure characterization of natural polysaccharides.
- Published in:
- Food Frontiers, 2022, v. 3, n. 4, p. 631, doi. 10.1002/fft2.150
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- Publication type:
- Article
Identification of Putative Causal Relationships Between Type 2 Diabetes and Blood-Based Biomarkers in East Asians by Mendelian Randomization.
- Published in:
- American Journal of Epidemiology, 2022, v. 191, n. 11, p. 1867, doi. 10.1093/aje/kwac118
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- Publication type:
- Article
A Potential Role of Plant/Macrofungi/Algae-Derived Non-Starch Polysaccharide in Colitis Curing: Review of Possible Mechanisms of Action.
- Published in:
- Molecules, 2022, v. 27, n. 19, p. 6467, doi. 10.3390/molecules27196467
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- Publication type:
- Article
parameter-free deep embedded clustering method for single-cell RNA-seq data.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac172
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- Publication type:
- Article
Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac297
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- Publication type:
- Article
Genetic evidence for a causal relationship between type 2 diabetes and peripheral artery disease in both Europeans and East Asians.
- Published in:
- BMC Medicine, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12916-022-02476-0
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- Publication type:
- Article
Related Factors of Cerebral Hemorrhage after Cerebral Infarction and the Effect of Atorvastatin Combined with Intensive Nursing Care.
- Published in:
- Computational & Mathematical Methods in Medicine, 2022, p. 1, doi. 10.1155/2022/9546006
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- Publication type:
- Article
Structure, Physicochemical Property, and Functional Activity of Dietary Fiber Obtained from Pear Fruit Pomace (Pyrus ussuriensis Maxim) via Different Extraction Methods.
- Published in:
- Foods, 2022, v. 11, n. 14, p. 2161, doi. 10.3390/foods11142161
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- Publication type:
- Article
Deep learning driven biosynthetic pathways navigation for natural products with BioNavi-NP.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30970-9
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- Publication type:
- Article
Optimization Extraction and Antioxidant Activity of Crude Polysaccharide from Chestnut Mushroom (Agrocybe aegerita) by Accelerated Solvent Extraction Combined with Response Surface Methodology (ASE-RSM).
- Published in:
- Molecules, 2022, v. 27, n. 8, p. N.PAG, doi. 10.3390/molecules27082380
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- Publication type:
- Article
Capturing large genomic contexts for accurately predicting enhancer-promoter interactions.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab577
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- Publication type:
- Article
AlphaFold2-aware protein–DNA binding site prediction using graph transformer.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab564
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- Publication type:
- Article
robust and scalable graph neural network for accurate single-cell classification.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab570
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- Publication type:
- Article
A coarse‐refine segmentation network for COVID‐19 CT images.
- Published in:
- IET Image Processing (Wiley-Blackwell), 2022, v. 16, n. 2, p. 333, doi. 10.1049/ipr2.12278
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- Publication type:
- Article
Structure-aware protein–protein interaction site prediction using deep graph convolutional network.
- Published in:
- Bioinformatics, 2022, v. 38, n. 1, p. 125, doi. 10.1093/bioinformatics/btab643
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- Publication type:
- Article
Mendelian randomization study reveals a population-specific putative causal effect of type 2 diabetes in risk of cataract.
- Published in:
- 2021
- By:
- Publication type:
- journal article
Deep scaffold hopping with multimodal transformer neural networks.
- Published in:
- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00565-5
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- Publication type:
- Article
scAdapt: virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab281
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- Publication type:
- Article
An Insight into Anti-Inflammatory Activities and Inflammation Related Diseases of Anthocyanins: A Review of Both In Vivo and In Vitro Investigations.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 20, p. 11076, doi. 10.3390/ijms222011076
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- Publication type:
- Article
An Adaptive Transfer-Learning-Based Deep Cox Neural Network for Hepatocellular Carcinoma Prognosis Prediction.
- Published in:
- Frontiers in Oncology, 2021, v. 11, p. 1, doi. 10.3389/fonc.2021.692774
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- Publication type:
- Article
PharmKG: a dedicated knowledge graph benchmark for bomedical data mining.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa344
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- Publication type:
- Article
Accurately Discriminating COVID-19 from Viral and Bacterial Pneumonia According to CT Images Via Deep Learning.
- Published in:
- Interdisciplinary Sciences: Computational Life Sciences, 2021, v. 13, n. 2, p. 273, doi. 10.1007/s12539-021-00420-z
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- Publication type:
- Article
Systematic analysis to identify transcriptome-wide dysregulation of Alzheimer's disease in genes and isoforms.
- Published in:
- Human Genetics, 2021, v. 140, n. 4, p. 609, doi. 10.1007/s00439-020-02230-7
- By:
- Publication type:
- Article
Prioritization of schizophrenia risk genes from GWAS results by integrating multi-omics data.
- Published in:
- Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01294-x
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- Publication type:
- Article
Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map.
- Published in:
- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00488-1
- By:
- Publication type:
- Article
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D86, doi. 10.1093/nar/gkaa1076
- By:
- Publication type:
- Article