Works by Yang, Shangxin

Results: 46

Endofungal Mycetohabitans rhizoxinica Bacteremia Associated with Rhizopus microsporus Respiratory Tract Infection.

Published in:

2022

By:

Shangxin Yang;
Anikst, Victoria;
Adamson, Paul C.;
Yang, Shangxin

Publication type:

journal article

Endogenous Endophthalmitis Caused by ST66-K2 Hypervirulent Klebsiella pneumoniae, United States.

Published in:

2021

By:

Kamau, Edwin;
Allyn, Paul R.;
Beaird, Omer E.;
Ward, Kevin W.;
Kwan, Nancy;
Garner, Omai B.;
Shangxin Yang;
Yang, Shangxin

Publication type:

journal article

Genomic Characterizations of Clade III Lineage of Candida auris, California, USA.

Published in:

2021

By:

Price, Travis K.;
Mirasol, Ruel;
Ward, Kevin W.;
Dayo, Ayrton J.;
Hilt, Evann E.;
Chandrasekaran, Sukantha;
Garner, Omai B.;
de St Maurice, Annabelle;
Shangxin Yang;
Yang, Shangxin

Publication type:

journal article

Selection of hyperproduction of AmpC and SME-1 in a carbapenem-resistant Serratia marcescens isolate during antibiotic therapy.

Published in:

2018

By:

Hemarajata, Peera;
Amick, Thomas;
Shangxin Yang;
Gregson, Aric;
Holzmeyer, Cameron;
Bush, Karen;
Humphries, Romney M.;
Yang, Shangxin

Publication type:

journal article

On variants and vaccines: The effectiveness of Covid-19 monoclonal antibody therapy during two distinct periods in the pandemic.

Published in:

PLoS ONE, 2022, v. 17, n. 12, p. 1, doi. 10.1371/journal.pone.0278394

By:

Srinivasan, Vinay;
Weinstein, Stacey E.;
Bhimani, Azra;
Clemons, Nathan C.;
Dinolfo, Melissa;
Shin, Christina S.;
Grier, Jacqueline;
Lopez, Antonio;
Braggs, Jamia;
Boucher, Joni;
Batiste, Quanna N.;
Garner, Omai B.;
Yang, Shangxin;
Vijayan, Tara

Publication type:

Article

Diversity of upper respiratory tract infections and prevalence of Streptococcus pneumoniae colonization among patients with fever and flu-like symptoms.

Published in:

2019

By:

Jialiang Tang;
Jinkun Chen;
Tingting He;
Zhuojing Jiang;
Jiale Zhou;
Bin Hu;
Shangxin Yang

Publication type:

journal article

Elucidating the Clinical Interpretation and Impact of a Positive Plasma Cell-Free DNA Metagenomics Test Result—A Single Center Retrospective Study.

Published in:

Journal of Applied Laboratory Medicine, 2024, v. 9, n. 1, p. 14, doi. 10.1093/jalm/jfad083

By:

Vinh Dong, Huan;
Saleh, Tawny;
Kaur, Ishminder;
Yang, Shangxin

Publication type:

Article

Editorial: Integration of NGS in clinical and public health microbiology workflows: applications, compliance, quality considerations.

Published in:

Frontiers in Public Health, 2024, p. 1, doi. 10.3389/fpubh.2024.1357098

By:

Shangxin Yang;
Kozyreva, Varvara K.;
Timme, Ruth E.;
Hemarajata, Peera

Publication type:

Article

Deceiving Phenotypic Susceptibility Results on a Klebsiella pneumoniae Blood Isolate Carrying Plasmid-Mediated AmpC Gene bla DHA-1.

Published in:

Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fcimb.2021.561880

By:

Realegeno, Susan;
Ward, Kevin;
Garner, Omai B.;
Yang, Shangxin

Publication type:

Article

Multi-Year Analysis of Respiratory Viral Dynamics Reveals Significance of Rhinovirus in Young Children with Severe Respiratory Illness.

Published in:

Infectious Disease Reports, 2025, v. 17, n. 2, p. 29, doi. 10.3390/idr17020029

By:

Caldera, Juan Raphael;
Saleh, Tawny;
Fuller, Trevon;
Yang, Shangxin;
Nielsen-Saines, Karin

Publication type:

Article

Discovery of a Novel Hypervirulent Acinetobacter baumannii Strain in a Case of Community-Acquired Pneumonia.

Published in:

Infection & Drug Resistance, 2020, v. 13, p. 1147, doi. 10.2147/IDR.S244044

By:

Zhou, Hua;
Larkin, Paige MK;
Huang, Jinwei;
Yao, Yake;
Zhu, Bingquan;
Yang, Qing;
Hua, Xiaoting;
Zhou, Jianying;
Yang, Shangxin;
Yu, Yunsong

Publication type:

Article

Clinical Impact of Metagenomic Next-Generation Sequencing of Plasma Cell-Free DNA for the Diagnosis of Infectious Diseases: A Multicenter Retrospective Cohort Study.

Published in:

Clinical Infectious Diseases, 2021, v. 72, n. 2, p. 239, doi. 10.1093/cid/ciaa035

By:

Hogan, Catherine A;
Yang, Shangxin;
Garner, Omai B;
Green, Daniel A;
Gomez, Carlos A;
Bard, Jennifer Dien;
Pinsky, Benjamin A;
Banaei, Niaz

Publication type:

Article

Fungal Whole-Genome Sequencing for Species Identification: From Test Development to Clinical Utilization.

Published in:

Journal of Fungi, 2023, v. 9, n. 2, p. 183, doi. 10.3390/jof9020183

By:

Salem-Bango, Zackary;
Price, Travis K;
Chan, June L;
Chandrasekaran, Sukantha;
Garner, Omai B;
Yang, Shangxin

Publication type:

Article

A Collaborative Tale of Diagnosing and Treating Chronic Pulmonary Aspergillosis, from the Perspectives of Clinical Microbiologists, Surgical Pathologists, and Infectious Disease Clinicians.

Published in:

Journal of Fungi, 2020, v. 6, n. 3, p. 1, doi. 10.3390/jof6030106

By:

Larkin, Paige M. K.;
Multani, Ashrit;
Beaird, Omer E.;
Dayo, Ayrton J.;
Fishbein, Gregory A.;
Shangxin Yang

Publication type:

Article

Epidemiology and SARS-CoV-2 Infection Patterns among Youth Followed at a Large Los Angeles Health Network during 2020–2022: Clinical Presentation, Prevalent Strains, and Correlates of Disease Severity.

Published in:

Vaccines, 2023, v. 11, n. 6, p. 1024, doi. 10.3390/vaccines11061024

By:

Saleh, Tawny;
Fuller, Trevon;
Cambou, Mary C.;
Segura, Eddy R.;
Kamau, Edwin;
Yang, Shangxin;
Garner, Omai B.;
Nielsen-Saines, Karin

Publication type:

Article

Case Report: Disseminated Edwardsiella tarda infection in an immunocompromised patient.

Published in:

Frontiers in Cellular & Infection Microbiology, 2023, p. 1, doi. 10.3389/fcimb.2023.1292768

By:

An, Lucia;
Chan, June L.;
Nguyen, Margaret;
Shangxin Yang;
Deville, Jaime G.

Publication type:

Article

Genomic epidemiology of the Los Angeles COVID-19 outbreak and the early history of the B.1.43 strain in the USA.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08488-7

By:

Guo, Longhua;
Boocock, James;
Hilt, Evann E.;
Chandrasekaran, Sukantha;
Zhang, Yi;
Munugala, Chetan;
Sathe, Laila;
Alexander, Noah;
Arboleda, Valerie A.;
Flint, Jonathan;
Eskin, Eleazar;
Luo, Chongyuan;
Yang, Shangxin;
Garner, Omai B.;
Yin, Yi;
Bloom, Joshua S.;
Kruglyak, Leonid

Publication type:

Article

Research on the risks and opportunities of international railway projects based on FIDIC-EPC contract.

Published in:

PM World Journal, 2018, v. 7, n. 6, p. 1

By:

Shangxin Yang

Publication type:

Article

Disguised as Ovarian Tumor: A Rare Case of Uterine Abscess Due to Hypervirulent Klebsiella pneumoniae Infection.

Published in:

2022

By:

Kamau, Edwin;
Ranson, Elizabeth L;
Zakhour, Mae;
Mayo, Mark S;
Sakona, Ashlyn N;
Allyn, Paul R;
Yang, Shangxin

Publication type:

Case Study

Carbapenem Resistant Aeromonas hydrophila Carrying bla cphA 7 Isolated From Two Solid Organ Transplant Patients.

Published in:

Frontiers in Cellular & Infection Microbiology, 2020, v. 10, p. N.PAG, doi. 10.3389/fcimb.2020.563482

By:

Hilt, Evann E.;
Fitzwater, Sean Patrick;
Ward, Kevin;
de St. Maurice, Annabelle;
Chandrasekaran, Sukantha;
Garner, Omai B.;
Yang, Shangxin

Publication type:

Article

Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography.

Published in:

Clinical Infectious Diseases, 2017, v. 64, n. 7, p. 894, doi. 10.1093/cid/ciw876

By:

Yang, Shangxin;
Hemarajata, Peera;
Hindler, Janet;
Li, Fan;
Adisetiyo, Helty;
Aldrovandi, Grace;
Sebra, Robert;
Kasarskis, Andrew;
MacCannell, Duncan;
Didelot, Xavier;
Russell, Dana;
Rubin, Zachary;
Humphries, Romney

Publication type:

Article

Aeromonas nosocomial cluster: Investigation review of possible modes of transmission.

Published in:

2024

By:

Bisht, Anjali;
Gray, Hannah;
Caldera, JR;
Yang, Shangxin;
Uslan, Dan

Publication type:

Abstract

Aeromonas nosocomial cluster: Investigation review of possible modes of transmission.

Published in:

2023

By:

Bisht, Anjali;
Gray, Hannah;
Caldera, JR;
Yang, Shangxin;
Uslan, Dan

Publication type:

Abstract

Mycoplasma hominis infections in solid organ transplant recipients: Clinical characteristics, treatment outcomes, and comparison of phenotypic and genotypic susceptibility profiles.

Published in:

Transplant Infectious Disease, 2022, v. 24, n. 3, p. 1, doi. 10.1111/tid.13822

By:

Chang, Sandy Y.;
Price, Travis K.;
Beaird, Omer E.;
Gaynor, Pryce T.;
Schaenman, Joanna M.;
Carlson, Margrit E.;
Kubak, Bernard M.;
Yang, Shangxin;
Multani, Ashrit

Publication type:

Article

Prediction of BK viremia by urine viral load in renal transplant patients: An analysis of BK viral load results in paired urine and plasma samples.

Published in:

Transplant Infectious Disease, 2018, v. 20, n. 5, p. N.PAG, doi. 10.1111/tid.12952

By:

Madden, Kathleen;
Yang, Shangxin;
Janitell, Charles;
Sower, Daniel

Publication type:

Article

Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Central Nervous System Infections: Advances and Challenges.

Published in:

Molecular Diagnosis & Therapy, 2024, v. 28, n. 5, p. 513, doi. 10.1007/s40291-024-00727-9

By:

Su, LingHui David;
Chiu, Charles Y.;
Gaston, David;
Hogan, Catherine A.;
Miller, Steve;
Simon, Dennis W.;
Thakur, Kiran T.;
Yang, Shangxin;
Piantadosi, Anne

Publication type:

Article

The Economics of Cell-Free DNA Metagenomic Next-Generation Sequencing for Pathogen Detection.

Published in:

Clinical Chemistry, 2025, v. 71, n. 5, p. 532, doi. 10.1093/clinchem/hvaf027

By:

Yang, Shangxin

Publication type:

Article

Real-time Utilization of Metagenomic Sequencing in the Diagnosis and Treatment Monitoring of an Invasive Adenovirus B55 Infection and Subsequent Herpes Simplex Virus Encephalitis in an Immunocompetent Young Adult.

Published in:

Open Forum Infectious Diseases, 2018, v. 5, n. 6, p. N.PAG, doi. 10.1093/ofid/ofy114

By:

Fang, Xueling;
Xu, Mi;
Fang, Qiang;
Tan, Haiqin;
Zhou, Jiale;
Li, Ziqin;
Li, Fan;
Yang, Shangxin

Publication type:

Article

Case Report: Symptomatic Herpes Simplex Virus Type 2 and Monkeypox Coinfection in an Adult Male.

Published in:

American Journal of Tropical Medicine & Hygiene, 2022, v. 107, n. 6, p. 1258, doi. 10.4269/ajtmh.22-0499

By:

Prabaker, Kavitha K.;
de St. Maurice, Annabelle;
Uslan, Daniel Z.;
Yen, Gorge C.;
Manavi, Shadi;
Gray, Hannah K.;
Caldera, Juan R.;
Chan, June L.;
Garner, Omai B.;
Shangxin Yang

Publication type:

Article

Clinical and genomic characterization of hypervirulent Klebsiella pneumoniae (hvKp) infections via passive surveillance in Southern California, 2020-2022.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 01, doi. 10.3389/fmicb.2022.1001169

By:

Kamau, Edwin;
Ranson, Elizabeth L.;
Tsan, Allison T.;
Bergmann-Leitner, Elke S.;
Garner, Omai B.;
Shangxin Yang

Publication type:

Article

Bartonella quintana Endocarditis and Pauci-Immune Glomerulonephritis in Patient Without Known Risk Factors, USA, 2024.

Published in:

Emerging Infectious Diseases, 2025, v. 31, n. 4, p. 791, doi. 10.3201/eid3104.241812

By:

Weibo Yu;
Tymchuk, Christopher N.;
Ran Zhuo;
Stefanko, Daniel P.;
Forsyth, Cody;
Matysiak Match, Colette J.;
Chandrasekaran, Sukantha;
Fishbein, Gregory A.;
Shangxin Yang

Publication type:

Article

Domestically Acquired NDM-1-Producing Pseudomonas aeruginosa, Southern California, USA, 2023.

Published in:

Emerging Infectious Diseases, 2023, v. 29, n. 11, p. 2382, doi. 10.3201/eid2911.230646

By:

Gray, Hannah K.;
Beaird, Omer E.;
Smith, Ethan A.;
Schaenman, Joanna M.;
Shangxin Yang

Publication type:

Article

Extensively Drug-Resistant Shigella flexneri 2a, California, USA, 2022.

Published in:

Emerging Infectious Diseases, 2023, v. 29, n. 7, p. 1473, doi. 10.3201/eid2907.230465

By:

Caldera, J. R.;
Shangxin Yang;
Uslan, Daniel Z.

Publication type:

Article

Catheter-Related Bloodstream Infection Caused by Mycolicibacterium iranicum, California, USA.

Published in:

Emerging Infectious Diseases, 2023, v. 29, n. 1, p. 217, doi. 10.3201/eid2901.220851

By:

Ranson, Elizabeth L.;
Tsevat, Rebecca K.;
von Bredow, Benjamin;
Kamau, Edwin;
Shangxin Yang;
Prabaker, Kavitha K.

Publication type:

Article

Seawater-Associated Highly Pathogenic Francisella hispaniensis Infections Causing Multiple Organ Failure.

Published in:

2020

By:

Hua Zhou;
Qing Yang;
Lisha Shen;
Yake Yao;
Jun Xu;
Junhui Ye;
Xiaomai Wu;
Yunsong Yu;
Ziqin Li;
Jianying Zhou;
Shangxin Yang;
Zhou, Hua;
Yang, Qing;
Shen, Lisha;
Yao, Yake;
Xu, Jun;
Ye, Junhui;
Wu, Xiaomai;
Yu, Yunsong;
Li, Ziqin

Publication type:

journal article

Application of CRISPR-Based Human and Bacterial Ribosomal RNA Depletion for SARS-CoV-2 Shotgun Metagenomic Sequencing.

Published in:

American Journal of Clinical Pathology, 2023, v. 159, n. 2, p. 111, doi. 10.1093/ajcp/aqac135

By:

Cerón, Stacey;
Clemons, Nathan C;
Bredow, Benjamin von;
Yang, Shangxin

Publication type:

Article

Investigation of SARS-CoV-2 Epsilon Variant and Hospitalization Status by Genomic Surveillance in a Single Large Health System During the 2020-2021 Winter Surge in Southern California.

Published in:

2022

By:

Yang, Shangxin;
Hemarajata, Peera;
Hilt, Evann E;
Price, Travis K;
Garner, Omai B;
Green, Nicole M

Publication type:

Journal Article

Case Report and Genomic Analysis of Cefiderocol-Resistant Escherichia coli Clinical Isolates.

Published in:

American Journal of Clinical Pathology, 2022, v. 157, n. 2, p. 257, doi. 10.1093/ajcp/aqab115

By:

Price, Travis K;
Davar, Kusha;
Contreras, Deisy;
Ward, Kevin W;
Garner, Omai B;
Simner, Patricia J;
Yang, Shangxin;
Chandrasekaran, Sukantha

Publication type:

Article

Clinical and Epidemiologic Evaluation of Inconclusive COVID-19 PCR Results Using a Quantitative Algorithm.

Published in:

2021

By:

Yang, Shangxin;
Stanzione, Nicholas;
Uslan, Daniel Z;
Garner, Omai B;
Maurice, Annabelle de St;
de St Maurice, Annabelle

Publication type:

journal article

Clinical Whole-Genome Sequencing Assay for Rapid Mycobacterium tuberculosis Complex First-Line Drug Susceptibility Testing and Phylogenetic Relatedness Analysis.

Published in:

Microorganisms, 2023, v. 11, n. 10, p. 2538, doi. 10.3390/microorganisms11102538

By:

Shaw, Bennett;
von Bredow, Benjamin;
Tsan, Allison;
Garner, Omai;
Yang, Shangxin

Publication type:

Article

Transient SARS-CoV-2 RNA-Dependent RNA Polymerase Mutations after Remdesivir Treatment for Chronic COVID-19 in Two Transplant Recipients: Case Report and Intra-Host Viral Genomic Investigation.

Published in:

Microorganisms, 2023, v. 11, n. 8, p. 2096, doi. 10.3390/microorganisms11082096

By:

Yang, Shangxin;
Multani, Ashrit;
Garrigues, Jacob M.;
Oh, Michael S.;
Hemarajata, Peera;
Burleson, Taylor;
Green, Nicole M.;
Oliai, Caspian;
Gaynor, Pryce T.;
Beaird, Omer E.;
Winston, Drew J.;
Seet, Christopher S.;
Schaenman, Joanna M.

Publication type:

Article

Clinical and Genomic Characterization of Carbapenem-Resistant Klebsiella pneumoniae with Concurrent Production of NDM and OXA-48-like Carbapenemases in Southern California, 2016–2022.

Published in:

Microorganisms, 2023, v. 11, n. 7, p. 1717, doi. 10.3390/microorganisms11071717

By:

Cerón, Stacey;
Salem-Bango, Zackary;
Contreras, Deisy A.;
Ranson, Elizabeth L.;
Yang, Shangxin

Publication type:

Article

Metagenomic Sequencing of Positive Blood Culture Fluid for Accurate Bacterial and Fungal Species Identification: A Pilot Study.

Published in:

Microorganisms, 2023, v. 11, n. 5, p. 1259, doi. 10.3390/microorganisms11051259

By:

Kamau, Edwin;
Yang, Shangxin

Publication type:

Article

Uncomplicated pharyngitis due to family transmission of hypervirulent Klebsiella pneumoniae.

Published in:

2025

By:

Gray, Hannah K.;
Malhotra, Sanchi;
Gonzalez-Ferrer, Shekina;
Whitehill, Gregory D.;
Chalmers, Alisa C.;
Yang, Shangxin

Publication type:

Case Study

Carbapenem resistant Campylobacter jejuni bacteremia in a Bruton's X-linked agammaglobulinemia patient.

Published in:

2024

By:

Zhuo, Ran;
Younes, Ramee L.;
Ward, Kevin;
Yang, Shangxin

Publication type:

Case Study

Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome.

Published in:

JAMA Pediatrics, 2017, v. 171, n. 7, p. 647, doi. 10.1001/jamapediatrics.2017.0378

By:

Pannaraj, Pia S.;
Fan Li;
Cerini, Chiara;
Bender, Jeffrey M.;
Shangxin Yang;
Rollie, Adrienne;
Adisetiyo, Helty;
Zabih, Sara;
Lincez, Pamela J.;
Bittinger, Kyle;
Bailey, Aubrey;
Bushman, Frederic D.;
Sleasman, John W.;
Aldrovandi, Grace M.

Publication type:

Article