Works by Yanaka, Saeko

Results: 39

Characterization of New DNA Aptamers for Anti‐HIV‐1 Reverse Transcriptase.

Published in:

ChemBioChem, 2021, v. 22, n. 5, p. 915, doi. 10.1002/cbic.202000633

By:

Ratanabunyong, Siriluk;
Aeksiri, Niran;
Yanaka, Saeko;
Yagi‐Utsumi, Maho;
Kato, Koichi;
Choowongkomon, Kiattawee;
Hannongbua, Supa

Publication type:

Article

Conformational Analysis of a High-Mannose-Type Oligosaccharide Displaying Glucosyl Determinant Recognised by Molecular Chaperones Using NMR-Validated Molecular Dynamics Simulation.

Published in:

ChemBioChem, 2017, v. 18, n. 4, p. 396, doi. 10.1002/cbic.201600595

By:

Suzuki, Tatsuya;
Kajino, Megumi;
Yanaka, Saeko;
Zhu, Tong;
Yagi, Hirokazu;
Satoh, Tadashi;
Yamaguchi, Takumi;
Kato, Koichi

Publication type:

Article

Metal Complex Lipids for Fluid–Fluid Phase Separation in Coassembled Phospholipid Membranes.

Published in:

Angewandte Chemie, 2021, v. 133, n. 24, p. 13715, doi. 10.1002/ange.202102774

By:

Ohtani, Ryo;
Anegawa, Yuka;
Watanabe, Hikaru;
Tajima, Yutaro;
Kinoshita, Masanao;
Matsumori, Nobuaki;
Kawano, Kenichi;
Yanaka, Saeko;
Kato, Koichi;
Nakamura, Masaaki;
Ohba, Masaaki;
Hayami, Shinya

Publication type:

Article

Pseudo‐Membrane Jackets: Two‐Dimensional Coordination Polymers Achieving Visible Phase Separation in Cell Membrane.

Published in:

Angewandte Chemie, 2020, v. 132, n. 41, p. 18087, doi. 10.1002/ange.202006600

By:

Ohtani, Ryo;
Kawano, Kenichi;
Kinoshita, Masanao;
Yanaka, Saeko;
Watanabe, Hikaru;
Hirai, Kenji;
Futaki, Shiroh;
Matsumori, Nobuaki;
Uji‐i, Hiroshi;
Ohba, Masaaki;
Kato, Koichi;
Hayami, Shinya

Publication type:

Article

Glutamine-free mammalian expression of recombinant glycoproteins with uniform isotope labeling: an application for NMR analysis of pharmaceutically relevant Fc glycoforms of human immunoglobulin G1.

Published in:

Journal of Biomolecular NMR, 2022, v. 76, n. 1/2, p. 17, doi. 10.1007/s10858-021-00387-5

By:

Yanaka, Saeko;
Yagi, Hirokazu;
Yogo, Rina;
Onitsuka, Masayoshi;
Kato, Koichi

Publication type:

Article

Stable isotope labeling approaches for NMR characterization of glycoproteins using eukaryotic expression systems.

Published in:

Journal of Biomolecular NMR, 2018, v. 71, n. 3, p. 193, doi. 10.1007/s10858-018-0169-2

By:

Yanaka, Saeko;
Yagi, Hirokazu;
Yogo, Rina;
Yagi-Utsumi, Maho;
Kato, Koichi

Publication type:

Article

Identification of potential C1-binding sites in the immunoglobulin CL domains.

Published in:

International Immunology, 2024, v. 36, n. 8, p. 405, doi. 10.1093/intimm/dxae017

By:

Yanaka, Saeko;
Kodama, Atsuji;
Nishiguchi, Shigetaka;
Fujita, Rina;
Shen, Jiana;
Boonsri, Pornthip;
Sung, Duckyong;
Isono, Yukiko;
Yagi, Hirokazu;
Miyanoiri, Yohei;
Uchihashi, Takayuki;
Kato, Koichi

Publication type:

Article

Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6075, doi. 10.3390/ijms24076075

By:

Hiranyakorn, Methanee;
Yagi-Utsumi, Maho;
Yanaka, Saeko;
Ohtsuka, Naoya;
Momiyama, Norie;
Satoh, Tadashi;
Kato, Koichi

Publication type:

Article

Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of C H 1 Domain Deletion.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 4, p. 2090, doi. 10.3390/ijms23042090

By:

Yanaka, Saeko;
Nishiguchi, Shigetaka;
Yogo, Rina;
Watanabe, Hiroki;
Shen, Jiana;
Yagi, Hirokazu;
Uchihashi, Takayuki;
Kato, Koichi

Publication type:

Article

NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 15, p. 5351, doi. 10.3390/ijms21155351

By:

Hiranyakorn, Methanee;
Yanaka, Saeko;
Satoh, Tadashi;
Wilasri, Thunchanok;
Jityuti, Benchawan;
Yagi-Utsumi, Maho;
Kato, Koichi

Publication type:

Article

On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 1, p. 147, doi. 10.3390/ijms21010147

By:

Yanaka, Saeko;
Yogo, Rina;
Watanabe, Hiroki;
Taniguchi, Yuki;
Satoh, Tadashi;
Komura, Naoko;
Ando, Hiromune;
Yagi, Hirokazu;
Yuki, Nobuhiro;
Uchihashi, Takayuki;
Kato, Koichi

Publication type:

Article

Mutational and Combinatorial Control of Self-Assembling and Disassembling of Human Proteasome α Subunits.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 9, p. 2308, doi. 10.3390/ijms20092308

By:

Sekiguchi, Taichiro;
Satoh, Tadashi;
Kurimoto, Eiji;
Song, Chihong;
Kozai, Toshiya;
Watanabe, Hiroki;
Ishii, Kentaro;
Yagi, Hirokazu;
Yanaka, Saeko;
Uchiyama, Susumu;
Uchihashi, Takayuki;
Murata, Kazuyoshi;
Kato, Koichi

Publication type:

Article

Formation of the chaperonin complex studied by 2D NMR spectroscopy.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0187022

By:

Takenaka, Toshio;
Nakamura, Takashi;
Yanaka, Saeko;
Yagi-Utsumi, Maho;
Chandak, Mahesh S.;
Takahashi, Kazunobu;
Paul, Subhankar;
Makabe, Koki;
Arai, Munehito;
Kato, Koichi;
Kuwajima, Kunihiro

Publication type:

Article

Metal Complex Lipids for Fluid–Fluid Phase Separation in Coassembled Phospholipid Membranes.

Published in:

Angewandte Chemie International Edition, 2021, v. 60, n. 24, p. 13603, doi. 10.1002/anie.202102774

By:

Ohtani, Ryo;
Anegawa, Yuka;
Watanabe, Hikaru;
Tajima, Yutaro;
Kinoshita, Masanao;
Matsumori, Nobuaki;
Kawano, Kenichi;
Yanaka, Saeko;
Kato, Koichi;
Nakamura, Masaaki;
Ohba, Masaaki;
Hayami, Shinya

Publication type:

Article

Pseudo‐Membrane Jackets: Two‐Dimensional Coordination Polymers Achieving Visible Phase Separation in Cell Membrane.

Published in:

Angewandte Chemie International Edition, 2020, v. 59, n. 41, p. 17931, doi. 10.1002/anie.202006600

By:

Ohtani, Ryo;
Kawano, Kenichi;
Kinoshita, Masanao;
Yanaka, Saeko;
Watanabe, Hikaru;
Hirai, Kenji;
Futaki, Shiroh;
Matsumori, Nobuaki;
Uji‐i, Hiroshi;
Ohba, Masaaki;
Kato, Koichi;
Hayami, Shinya

Publication type:

Article

The B domain of protein A retains residual structures in 6 M guanidinium chloride as revealed by hydrogen/deuterium‐exchange NMR spectroscopy.

Published in:

Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 3, p. 1, doi. 10.1002/pro.4569

By:

Yanaka, Saeko;
Yagi‐Utsumi, Maho;
Kato, Koichi;
Kuwajima, Kunihiro

Publication type:

Article

動的構造解析によるヒト主要組織適合複合体の安定化機構の解明.

Published in:

Seibutsu Butsuri, 2015, v. 55, n. 2, p. 101, doi. 10.2142/biophys.55.101

By:

Yanaka Saeko

Publication type:

Article

Characterization of amyloid β fibril formation under microgravity conditions.

Published in:

NPJ Microgravity, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41526-020-0107-y

By:

Yagi-Utsumi, Maho;
Yanaka, Saeko;
Song, Chihong;
Satoh, Tadashi;
Yamazaki, Chiaki;
Kasahara, Haruo;
Shimazu, Toru;
Murata, Kazuyoshi;
Kato, Koichi

Publication type:

Article

Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50722-y

By:

Akiba, Hiroki;
Tamura, Hiroko;
Kiyoshi, Masato;
Yanaka, Saeko;
Sugase, Kenji;
Caaveiro, Jose M. M.;
Tsumoto, Kouhei

Publication type:

Article

Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS).

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48911-w

By:

Inoue, Rintaro;
Nakagawa, Tatsuo;
Morishima, Ken;
Sato, Nobuhiro;
Okuda, Aya;
Urade, Reiko;
Yogo, Rina;
Yanaka, Saeko;
Yagi-Utsumi, Maho;
Kato, Koichi;
Omoto, Kazuki;
Ito, Kazuki;
Sugiyama, Masaaki

Publication type:

Article

The Fab portion of immunoglobulin G contributes to its binding to Fcγ receptor III.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48323-w

By:

Yogo, Rina;
Yamaguchi, Yuki;
Watanabe, Hiroki;
Yagi, Hirokazu;
Satoh, Tadashi;
Nakanishi, Mahito;
Onitsuka, Masayoshi;
Omasa, Takeshi;
Shimada, Mari;
Maruno, Takahiro;
Torisu, Tetsuo;
Watanabe, Shio;
Higo, Daisuke;
Uchihashi, Takayuki;
Yanaka, Saeko;
Uchiyama, Susumu;
Kato, Koichi

Publication type:

Article

A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems.

Published in:

Journal of Biochemistry, 2021, v. 169, n. 6, p. 701, doi. 10.1093/jb/mvab012

By:

Sato, Nobuhiro;
Yogo, Rina;
Yanaka, Saeko;
Martel, Anne;
Porcar, Lionel;
Morishima, Ken;
Inoue, Rintaro;
Tominaga, Taiki;
Arimori, Takao;
Takagi, Junichi;
Sugiyama, Masaaki;
Kato, Koichi

Publication type:

Article

Silkworm Pupae Function as Efficient Producers of Recombinant Glycoproteins with Stable-Isotope Labeling.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 11, p. 1482, doi. 10.3390/biom10111482

By:

Yagi, Hirokazu;
Yanaka, Saeko;
Yogo, Rina;
Ikeda, Akari;
Onitsuka, Masayoshi;
Yamazaki, Toshio;
Kato, Tatsuya;
Park, Enoch Y.;
Yokoyama, Jun;
Kato, Koichi

Publication type:

Article

Hyperthin nanochains composed of self-polymerizing protein shackles.

Published in:

Nature Communications, 2013, v. 4, n. 7, p. 2211, doi. 10.1038/ncomms3211

By:

Matsunaga, Ryo;
Yanaka, Saeko;
Nagatoishi, Satoru;
Tsumoto, Kouhei

Publication type:

Article

Fungal β‐Mannosyloxymannitol Glycolipids and Their Analogues: Synthesis and Mincle‐Mediated Signaling Activity.

Published in:

European Journal of Organic Chemistry, 2022, v. 2022, n. 20, p. 1, doi. 10.1002/ejoc.202200109

By:

Matsumaru, Takanori;
Sakuratani, Kasumi;
Yanaka, Saeko;
Kato, Koichi;
Yamasaki, Sho;
Fujimoto, Yukari

Publication type:

Article

Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations.

Published in:

Antibodies (2073-4468), 2019, v. 8, n. 3, p. 39, doi. 10.3390/antib8030039

By:

Yanaka, Saeko;
Yogo, Rina;
Inoue, Rintaro;
Sugiyama, Masaaki;
Itoh, Satoru G.;
Okumura, Hisashi;
Miyanoiri, Yohei;
Yagi, Hirokazu;
Satoh, Tadashi;
Yamaguchi, Takumi;
Kato, Koichi

Publication type:

Article

Hyper-Assembly of Self-Assembled Glycoclusters Mediated by Specific Carbohydrate-Carbohydrate Interactions.

Published in:

Chemistry - An Asian Journal, 2017, v. 12, n. 9, p. 968, doi. 10.1002/asia.201700202

By:

Yan, Gengwei;
Yamaguchi, Takumi;
Suzuki, Tatsuya;
Yanaka, Saeko;
Sato, Sota;
Fujita, Makoto;
Kato, Koichi

Publication type:

Article

Exploration of the Conformational Dynamics of Major Histocompatibility Complex Molecules.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00632

By:

Saeko Yanaka;
Kenji Sugase

Publication type:

Article

Elucidating the Unique J-Shaped Protomer Structure of Amyloid-β(1-40) Fibril with Cryo-Electron Microscopy.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 3, p. 1179, doi. 10.3390/ijms26031179

By:

Burton-Smith, Raymond N.;
Yagi-Utsumi, Maho;
Yanaka, Saeko;
Song, Chihong;
Murata, Kazuyoshi;
Kato, Koichi

Publication type:

Article

Desiccation-induced fibrous condensation of CAHS protein from an anhydrobiotic tardigrade.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-00724-6

By:

Yagi-Utsumi, Maho;
Aoki, Kazuhiro;
Watanabe, Hiroki;
Song, Chihong;
Nishimura, Seiji;
Satoh, Tadashi;
Yanaka, Saeko;
Ganser, Christian;
Tanaka, Sae;
Schnapka, Vincent;
Goh, Ean Wai;
Furutani, Yuji;
Murata, Kazuyoshi;
Uchihashi, Takayuki;
Arakawa, Kazuharu;
Kato, Koichi

Publication type:

Article

Theoretical and Experimental Studies on Inclusion Complexes of Pinostrobin and β-Cyclodextrins.

Published in:

Scientia Pharmaceutica, 2018, v. 86, n. 1, p. 1, doi. 10.3390/scipharm86010005

By:

Kicuntod, Jintawee;
Sangpheak, Kanyani;
Mueller, Monika;
Wolschann, Peter;
Viernstein, Helmut;
Saeko Yanaka;
Koichi Kato;
Chavasiri, Warinthorn;
Pongsawasdi, Piamsook;
Kungwan, Nawee;
Rungrotmongkol, Thanyada

Publication type:

Article

Contribution of the flexible loop region to the function of staphylococcal enterotoxin B.

Published in:

PEDS: Protein Engineering, Design & Selection, 2010, v. 23, n. 5, p. 415, doi. 10.1093/protein/gzq006

By:

Yanaka, Saeko;
Kudou, Motonori;
Tanaka, Yoshikazu;
Sasaki, Takumi;
Takemoto, Sumiyo;
Sakata, Atsuko;
Hattori, Yukio;
Koshi, Tomoyuki;
Futaki, Shiro;
Tsumoto, Kouhei;
Nakashima, Toshihiro

Publication type:

Article

DMSO-Quenched H/D-Exchange 2D NMR Spectroscopy and Its Applications in Protein Science †.

Published in:

Molecules, 2022, v. 27, n. 12, p. 3748, doi. 10.3390/molecules27123748

By:

Kuwajima, Kunihiro;
Yagi-Utsumi, Maho;
Yanaka, Saeko;
Kato, Koichi

Publication type:

Article

Biophysical Characterization of Novel DNA Aptamers against K103N/Y181C Double Mutant HIV-1 Reverse Transcriptase.

Published in:

Molecules, 2022, v. 27, n. 1, p. 1, doi. 10.3390/molecules27010285

By:

Siriluk Ratanabunyong;
Supaphorn Seetaha;
Supa Hannongbua;
Saeko Yanaka;
Maho Yagi-Utsumi;
Koichi Kato;
Atchara Paemanee;
Kiattawee Choowongkomon

Publication type:

Article

NMR Detection of Semi-Specific Antibody Interactions in Serum Environments.

Published in:

Molecules, 2017, v. 22, n. 10, p. 1619, doi. 10.3390/molecules22101619

By:

Saeko Yanaka;
Toshio Yamazaki;
Rina Yogo;
Masanori Noda;
Susumu Uchiyama;
Hirokazu Yagi;
Koichi Kato

Publication type:

Article

Negative interference with antibody-dependent cellular cytotoxicity mediated by rituximab from its interactions with human serum proteins.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1090898

By:

Saeko Yanaka;
Rina Yogo;
Hirokazu Yagi;
Masayoshi Onitsuka;
Natsumi Wakaizumi;
Yuki Yamaguchi;
Susumu Uchiyama;
Koichi Kato

Publication type:

Article

The Fab portion of immunoglobulin G has sites in the CL domain that interact with Fc gamma receptor IIIa.

Published in:

2022

By:

Yamaguchi, Yuki;
Wakaizumi, Natsumi;
Irisa, Mine;
Maruno, Takahiro;
Shimada, Mari;
Shintani, Koya;
Nishiumi, Haruka;
Yogo, Rina;
Yanaka, Saeko;
Higo, Daisuke;
Torisu, Tetsuo;
Kato, Koichi;
Uchiyama, Susumu

Publication type:

Report

NMR assignments of the N-glycans of the Fc fragment of mouse immunoglobulin G2b glycoprotein.

Published in:

Biomolecular NMR Assignments, 2021, v. 15, n. 1, p. 187, doi. 10.1007/s12104-020-10004-5

By:

Yanaka, Saeko;
Yamaguchi, Yoshiki;
Takizawa, Takeshi;
Miyanoiri, Yohei;
Yogo, Rina;
Shimada, Ichio;
Kato, Koichi

Publication type:

Article

Backbone 1H, 13C, and 15N assignments of the extracellular region of human Fcγ receptor IIIb.

Published in:

Biomolecular NMR Assignments, 2018, v. 12, n. 1, p. 201, doi. 10.1007/s12104-018-9809-4

By:

Yogo, Rina;
Yanaka, Saeko;
Kato, Koichi

Publication type:

Article

Works by Yanaka, Saeko

Characterization of New DNA Aptamers for Anti‐HIV‐1 Reverse Transcriptase.

Conformational Analysis of a High-Mannose-Type Oligosaccharide Displaying Glucosyl Determinant Recognised by Molecular Chaperones Using NMR-Validated Molecular Dynamics Simulation.

Metal Complex Lipids for Fluid–Fluid Phase Separation in Coassembled Phospholipid Membranes.

Pseudo‐Membrane Jackets: Two‐Dimensional Coordination Polymers Achieving Visible Phase Separation in Cell Membrane.

Glutamine-free mammalian expression of recombinant glycoproteins with uniform isotope labeling: an application for NMR analysis of pharmaceutically relevant Fc glycoforms of human immunoglobulin G1.

Stable isotope labeling approaches for NMR characterization of glycoproteins using eukaryotic expression systems.

Identification of potential C1-binding sites in the immunoglobulin C<sub>L</sub> domains.

Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains.

Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of C H 1 Domain Deletion.

NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains.

On-Membrane Dynamic Interplay between Anti-GM1 IgG Antibodies and Complement Component C1q.

Mutational and Combinatorial Control of Self-Assembling and Disassembling of Human Proteasome α Subunits.

Formation of the chaperonin complex studied by 2D NMR spectroscopy.

Metal Complex Lipids for Fluid–Fluid Phase Separation in Coassembled Phospholipid Membranes.

Pseudo‐Membrane Jackets: Two‐Dimensional Coordination Polymers Achieving Visible Phase Separation in Cell Membrane.

The B domain of protein A retains residual structures in 6 M guanidinium chloride as revealed by hydrogen/deuterium‐exchange NMR spectroscopy.

動的構造解析によるヒト主要組織適合複合体の安定化機構の解明.

Characterization of amyloid β fibril formation under microgravity conditions.

Structural and thermodynamic basis for the recognition of the substrate-binding cleft on hen egg lysozyme by a single-domain antibody.

Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS).

The Fab portion of immunoglobulin G contributes to its binding to Fcγ receptor III.

A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems.

Silkworm Pupae Function as Efficient Producers of Recombinant Glycoproteins with Stable-Isotope Labeling.

Hyperthin nanochains composed of self-polymerizing protein shackles.

Fungal β‐Mannosyloxymannitol Glycolipids and Their Analogues: Synthesis and Mincle‐Mediated Signaling Activity.

Dynamic Views of the Fc Region of Immunoglobulin G Provided by Experimental and Computational Observations.

Hyper-Assembly of Self-Assembled Glycoclusters Mediated by Specific Carbohydrate-Carbohydrate Interactions.

Exploration of the Conformational Dynamics of Major Histocompatibility Complex Molecules.

Elucidating the Unique J-Shaped Protomer Structure of Amyloid-β(1-40) Fibril with Cryo-Electron Microscopy.

Desiccation-induced fibrous condensation of CAHS protein from an anhydrobiotic tardigrade.

Theoretical and Experimental Studies on Inclusion Complexes of Pinostrobin and β-Cyclodextrins.

Contribution of the flexible loop region to the function of staphylococcal enterotoxin B.

DMSO-Quenched H/D-Exchange 2D NMR Spectroscopy and Its Applications in Protein Science †.

Biophysical Characterization of Novel DNA Aptamers against K103N/Y181C Double Mutant HIV-1 Reverse Transcriptase.

NMR Detection of Semi-Specific Antibody Interactions in Serum Environments.

Negative interference with antibody-dependent cellular cytotoxicity mediated by rituximab from its interactions with human serum proteins.

The Fab portion of immunoglobulin G has sites in the CL domain that interact with Fc gamma receptor IIIa.

NMR assignments of the N-glycans of the Fc fragment of mouse immunoglobulin G2b glycoprotein.

Backbone <sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N assignments of the extracellular region of human Fcγ receptor IIIb.