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Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Toward a Cell Atlas of the Human Airway.
- Published in:
- 2020
- By:
- Publication type:
- Editorial
Single-Cell Transcriptional Archetypes of Airway Inflammation in Cystic Fibrosis.
- Published in:
- 2020
- By:
- Publication type:
- journal article
A Network of Sputum MicroRNAs Is Associated with Neutrophilic Airway Inflammation in Asthma.
- Published in:
- 2020
- By:
- Publication type:
- journal article
Modeling RNA degradation for RNA-Seq with applications.
- Published in:
- Biostatistics, 2012, v. 13, n. 4, p. 734, doi. 10.1093/biostatistics/kxs001
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- Publication type:
- Article
A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1727-4
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- Publication type:
- Article
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27716-4
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- Publication type:
- Article
Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma.
- Published in:
- 2021
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- Publication type:
- journal article
Openness weighted association studies: leveraging personal genome information to prioritize non-coding variants.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4737, doi. 10.1093/bioinformatics/btab514
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- Publication type:
- Article
Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity.
- Published in:
- PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003645
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- Publication type:
- Article
Effects of Goserellin on Serum VEGF, Anti-Endometrial Antibody and Sex Hormone Levels in Patients with Endometriosis.
- Published in:
- Pakistan Journal of Zoology, 2024, v. 56, n. 5, p. 2033, doi. 10.17582/journal.pjz/20220730050711
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- Publication type:
- Article
Somatic Mutations: The Next Frontier in Demystifying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis?
- Published in:
- American Journal of Respiratory & Critical Care Medicine, 2023, v. 208, n. 11, p. 1150, doi. 10.1164/rccm.202310-1774ed
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- Publication type:
- Article
Lung Microenvironments and Disease Progression in Fibrotic Hypersensitivity Pneumonitis.
- Published in:
- 2022
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- Publication type:
- journal article
Supplementary material Lung microenvironments and disease progression in fibrotic hypersensitivity pneumonitis.
- Published in:
- American Journal of Respiratory & Critical Care Medicine, 2022, v. 205, n. 1, p. E1, doi. 10.1164/rccm.202103-0569oc
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- Publication type:
- Article
Non-invasive Analysis of the Sputum Transcriptome Discriminates Clinical Phenotypes of Asthma.
- Published in:
- American Journal of Respiratory & Critical Care Medicine, 2015, v. 191, n. 10, p. E1, doi. 10.1164/rccm.201408-1440oc
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- Publication type:
- Article
Noninvasive Analysis of the Sputum Transcriptome Discriminates Clinical Phenotypes of Asthma.
- Published in:
- American Journal of Respiratory & Critical Care Medicine, 2015, v. 191, n. 10, p. 1116, doi. 10.1164/rccm.201408-1440OC
- By:
- Publication type:
- Article
Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
- Published in:
- 2023
- By:
- Publication type:
- Correction Notice
iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05432-8
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- Publication type:
- Article
Progressive recruitment of Runx2 to genomic targets despite decreasing expression during osteoblast differentiation.
- Published in:
- Journal of Cellular Biochemistry, 2008, v. 105, n. 4, p. 965, doi. 10.1002/jcb.21900
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- Publication type:
- Article
Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival.
- Published in:
- Cancers, 2020, v. 12, n. 8, p. 2230, doi. 10.3390/cancers12082230
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- Publication type:
- Article
Testing gene set enrichment for subset of genes: Sub-GSE.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-362
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- Publication type:
- Article
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 453, doi. 10.1186/1471-2105-8-452
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- Publication type:
- Article
Application of Synthetic DINCAE–BME Spatiotemporal Interpolation Framework to Reconstruct Chlorophyll–a from Satellite Observations in the Arabian Sea.
- Published in:
- Journal of Marine Science & Engineering, 2023, v. 11, n. 4, p. 743, doi. 10.3390/jmse11040743
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- Publication type:
- Article
Biomarkers and molecular endotypes of sarcoidosis: lessons from omics and non-omics studies.
- Published in:
- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2023.1342429
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- Publication type:
- Article
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac616
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- Publication type:
- Article
Genomic Comparison Among Global Isolates of <italic>L. interrogans</italic> Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2018, v. 8, p. N.PAG, doi. 10.3389/fcimb.2018.00193
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- Publication type:
- Article
G2S3: A gene graph-based imputation method for single-cell RNA sequencing data.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1009029
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- Publication type:
- Article
Plasmacytoid Dendritic Cells, Interferon Signaling, and FcγR Contribute to Pathogenesis and Therapeutic Response in Childhood Immune Thrombocytopenia.
- Published in:
- Science Translational Medicine, 2013, v. 5, n. 193, p. 1, doi. 10.1126/scitranslmed.3006277
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- Publication type:
- Article
MARD: a new method to detect differential gene expression in treatment-control time courses.
- Published in:
- Bioinformatics, 2006, v. 22, n. 21, p. 2650, doi. 10.1093/bioinformatics/btl451
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- Publication type:
- Article
SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03416-2
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- Publication type:
- Article
Large-scale risk prediction applied to Genetic Analysis Workshop 17 mini-exome sequence data.
- Published in:
- BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S46
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- Publication type:
- Article
Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data.
- Published in:
- BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S37
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- Publication type:
- Article
Detecting functional rare variants by collapsing and incorporating functional annotation in Genetic Analysis Workshop 17 mini-exome data.
- Published in:
- BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S27
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- Publication type:
- Article
Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data.
- Published in:
- BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S117
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- Publication type:
- Article
Sputum alarmins delineate distinct T2 cytokine pathways and unique subtypes of patients with asthma.
- Published in:
- Allergy, 2023, v. 78, n. 12, p. 3274, doi. 10.1111/all.15915
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- Publication type:
- Article
Nonlinear cooperation of p53-ING1-induced bax expression and protein S-nitrosylation in GSNO-induced thymocyte apoptosis: a quantitative approach with cross-platform validation.
- Published in:
- Apoptosis, 2009, v. 14, n. 2, p. 236, doi. 10.1007/s10495-008-0288-4
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- Publication type:
- Article
Sputum Gene Expression of IL-13 Receptor α2 Chain Correlates with Airflow Obstruction and Helper T-Cell Type 2 Inflammation in Asthma.
- Published in:
- 2016
- By:
- Publication type:
- journal article
Noninvasive Analysis of the Sputum Transcriptome Discriminates Clinical Phenotypes of Asthma.
- Published in:
- 2016
- By:
- Publication type:
- journal article
Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02033-z
- By:
- Publication type:
- Article
Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02033-z
- By:
- Publication type:
- Article
Dealing with high dimensionality for the identification of common and rare variants as main effects and for gene-environment interaction.
- Published in:
- Genetic Epidemiology, 2011, v. 35, p. S35, doi. 10.1002/gepi.20647
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- Publication type:
- Article
On optimal pooling designs to identify rare variants through massive resequencing.
- Published in:
- Genetic Epidemiology, 2011, v. 35, n. 3, p. 139, doi. 10.1002/gepi.20561
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- Publication type:
- Article
Noninvasive determinants of pulmonary hypertension in interstitial lung disease.
- Published in:
- Pulmonary Circulation, 2023, v. 13, n. 1, p. 1, doi. 10.1002/pul2.12197
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- Publication type:
- Article
Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03785-y
- By:
- Publication type:
- Article