Works by Yamauchi, Yoshio

Results: 40

An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e140, doi. 10.1093/nar/gkp732

By:

Taoka, Masato;
Yamauchi, Yoshio;
Nobe, Yuko;
Masaki, Shunpei;
Nakayama, Hiroshi;
Ishikawa, Hideaki;
Takahashi, Nobuhiro;
Isobe, Toshiaki

Publication type:

Article

Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 6, p. e47, doi. 10.1093/nar/gkp099

By:

Nakayama, Hiroshi;
Akiyama, Misaki;
Taoka, Masato;
Yamauchi, Yoshio;
Nobe, Yuko;
Ishikawa, Hideaki;
Takahashi, Nobuhiro;
Isobe, Toshiaki

Publication type:

Article

Essential Roles of Gangliosides in the Formation and Maintenance of Membrane Microdomains in Brain Tissues.

Published in:

Neurochemical Research, 2012, v. 37, n. 6, p. 1185, doi. 10.1007/s11064-012-0764-7

By:

Ohmi, Yuhsuke;
Ohkawa, Yuki;
Yamauchi, Yoshio;
Tajima, Orie;
Furukawa, Keiko;
Furukawa, Koichi

Publication type:

Article

Toll-like receptor 8 senses degradation products of single-stranded RNA.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 2, p. 109, doi. 10.1038/nsmb.2943

By:

Tanji, Hiromi;
Ohto, Umeharu;
Shibata, Takuma;
Taoka, Masato;
Yamauchi, Yoshio;
Isobe, Toshiaki;
Miyake, Kensuke;
Shimizu, Toshiyuki

Publication type:

Article

Transcriptome analysis reveals selectively high expression of beige adipocyte marker genes in mouse perinephric fat.

Published in:

Bioscience, Biotechnology & Biochemistry, 2024, v. 88, n. 12, p. 1449, doi. 10.1093/bbb/zbae143

By:

Misawa, Yoshinori;
Takahashi, Yu;
Sasaki, Takashi;
Sato, Ryuichiro;
Yamauchi, Yoshio

Publication type:

Article

Comparison of gene expression and activation of transcription factors in organoid-derived monolayer intestinal epithelial cells and organoids.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 10, p. 2137, doi. 10.1093/bbb/zbab136

By:

Takahashi, Yu;
Inoue, Yu;
Kuze, Keitaro;
Sato, Shintaro;
Shimizu, Makoto;
Kiyono, Hiroshi;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

Orange peel extract reduces the inflammatory state of skeletal muscle after downhill running via an increase in IL-1RA.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 6, p. 1506, doi. 10.1093/bbb/zbab049

By:

Suzuki, Toshihide;
Shimizu, Makoto;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

Polymethoxyflavones in orange peel extract prevent skeletal muscle damage induced by eccentric exercise in rats.

Published in:

Bioscience, Biotechnology & Biochemistry, 2021, v. 85, n. 2, p. 440, doi. 10.1093/bbb/zbaa036

By:

Suzuki, Toshihide;
Shimizu, Makoto;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

BTB protein, dKLHL18/CG3571, serves as an adaptor subunit for a dCul3 ubiquitin ligase complex.

Published in:

Genes to Cells, 2009, v. 14, n. 8, p. 965, doi. 10.1111/j.1365-2443.2009.01323.x

By:

Fujiyama-Nakamura, Sally;
Ito, Saya;
Sawatsubashi, Shun;
Yamauchi, Yoshio;
Suzuki, Eriko;
Tanabe, Masahiko;
Kimura, Shuhei;
Murata, Takuya;
Isobe, Toshiaki;
ichi Takeyama, Ken;
Kato, Shigeaki

Publication type:

Article

Human colon organoid differentiation from induced pluripotent stem cells using an improved method.

Published in:

FEBS Letters, 2025, v. 599, n. 6, p. 912, doi. 10.1002/1873-3468.15082

By:

Lee, I‐Ting;
Takahashi, Yu;
Sasaki, Takashi;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

Increased expression levels of ppGalNAc-T13 in lung cancers: Significance in the prognostic diagnosis.

Published in:

International Journal of Oncology, 2016, v. 49, n. 4, p. 1369, doi. 10.3892/ijo.2016.3638

By:

KENICHI NOGIMORI;
TOMOKO HORI;
KOJI KAWAGUCHI;
TAKAYUKI FUKUI;
SHINJI MII;
HIROSHI NAKADA;
YASUYUKI MATSUMOTO;
YOSHIO YAMAUCHI;
MASAHIDE TAKAHASHI;
KEIKO FURUKAWA;
OKAJIMA TETSUYA;
KOHEI YOKOI;
YOSHINORI HASEGAWA;
KOICHI FURUKAWA

Publication type:

Article

Sterol Metabolism and Transport in Atherosclerosis and Cancer.

Published in:

Frontiers in Endocrinology, 2018, p. N.PAG, doi. 10.3389/fendo.2018.00509

By:

Yamauchi, Yoshio;
Rogers, Maximillian A.

Publication type:

Article

cDNA and deduced amino acid sequences of apolipophorin-IIIs from Bombyx mori and Bombyx mandarina.

Published in:

Archives of Insect Biochemistry & Physiology, 2000, v. 43, n. 1, p. 16, doi. 10.1002/(SICI)1520-6327(200001)43:1<16::AID-ARCH3>3.0.CO;2-W

By:

Yamauchi, Yoshio;
Hoeffer, Charles;
Yamamoto, Alvin;
Takeda, Hajime;
Ishihara, Ren;
Maekawa, Hideaki;
Sato, Ryouichi;
Su-Il, Seong;
Sumida, Motoyuki;
Wells, Michael A.;
Tsuchida, Kozo

Publication type:

Article

Establishment of a cell culture platform for human liver organoids and its application for lipid metabolism research.

Published in:

Biotechnology Journal, 2024, v. 19, n. 1, p. 1, doi. 10.1002/biot.202300365

By:

Kuboyama‐Sasaki, Ayane;
Takahashi, Yu;
Xia, Chen;
Hiro, Kahori;
Kobayashi, Tsuyoshi;
Ohdan, Hideki;
Shimizu, Makoto;
Yamauchi, Yoshio;
Kiyono, Hiroshi;
Sato, Ryuichiro

Publication type:

Article

GM1 / GD1b / GA1 synthase expression results in the reduced cancer phenotypes with modulation of composition and raft-localization of gangliosides in a melanoma cell line.

Published in:

Cancer Science, 2010, v. 101, n. 9, p. 2039, doi. 10.1111/j.1349-7006.2010.01613.x

By:

Dong, Yu;
Ikeda, Kazutaka;
Hamamura, Kazunori;
Zhang, Qing;
Kondo, Yuji;
Matsumoto, Yasuyuki;
Ohmi, Yuhsuke;
Yamauchi, Yoshio;
Furukawa, Keiko;
Taguchi, Ryo;
Furukawa, Koichi

Publication type:

Article

Truncated forms of U2 snRNA (U2-tfs) are shunted toward a novel uridylylation pathway that differs from the degradation pathway for U1-tfs.

Published in:

RNA Biology, 2018, v. 15, n. 2, p. 261, doi. 10.1080/15476286.2017.1408766

By:

Ishikawa, Hideaki;
Nobe, Yuko;
Izumikawa, Keiichi;
Taoka, Masato;
Yamauchi, Yoshio;
Nakayama, Hiroshi;
Simpson, Richard J;
Isobe, Toshiaki;
Takahash, Nobuhiro

Publication type:

Article

Fine tuning of cell signals by glycosylation.

Published in:

Journal of Biochemistry, 2012, v. 151, n. 6, p. 573, doi. 10.1093/jb/mvs043

By:

Furukawa, Koichi;
Ohkawa, Yuki;
Yamauchi, Yoshio;
Hamamura, Kazunori;
Ohmi, Yuhsuke;
Furukawa, Keiko

Publication type:

Article

Damage sensing mediated by serine proteases Hayan and Persephone for Toll pathway activation in apoptosis-deficient flies.

Published in:

PLoS Genetics, 2023, v. 19, n. 6, p. 1, doi. 10.1371/journal.pgen.1010761

By:

Nakano, Shotaro;
Kashio, Soshiro;
Nishimura, Kei;
Takeishi, Asuka;
Kosakamoto, Hina;
Obata, Fumiaki;
Kuranaga, Erina;
Chihara, Takahiro;
Yamauchi, Yoshio;
Isobe, Toshiaki;
Miura, Masayuki

Publication type:

Article

Large-scale identification of proteins expressed in mouse embryonic stem cells.

Published in:

Proteomics, 2005, v. 5, n. 5, p. 1346, doi. 10.1002/pmic.200400990

By:

Kohji Nagano;
Masato Taoka;
Yoshio Yamauchi;
Chiharu Itagaki;
Takashi Shinkawa;
Kazuto Nunomura;
Nobuko Okamura;
Nobuhiro Takahashi;
Tomonori Izumi;
Toshiaki Isobe

Publication type:

Article

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11750, doi. 10.1093/nar/gkaa893

By:

Matzov, Donna;
Taoka, Masato;
Nobe, Yuko;
Yamauchi, Yoshio;
Halfon, Yehuda;
Asis, Nofar;
Zimermann, Ella;
Rozenberg, Haim;
Bashan, Anat;
Bhushan, Shashi;
Isobe, Toshiaki;
Gray, Michael W;
Yonath, Ada;
Shalev-Benami, Moran

Publication type:

Article

TDP-43 regulates site-specific 2′- O -methylation of U1 and U2 snRNAs via controlling the Cajal body localization of a subset of C/D scaRNAs.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 5, p. 2487, doi. 10.1093/nar/gkz086

By:

Izumikawa, Keiichi;
Nobe, Yuko;
Ishikawa, Hideaki;
Yamauchi, Yoshio;
Taoka, Masato;
Sato, Ko;
Nakayama, Hiroshi;
Simpson, Richard J;
Isobe, Toshiaki;
Takahashi, Nobuhiro

Publication type:

Article

Landscape of the complete RNA chemical modifications in the human 80S ribosome.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 18, p. 9289, doi. 10.1093/nar/gky811

By:

Taoka, Masato;
Nobe, Yuko;
Yamaki, Yuka;
Sato, Ko;
Ishikawa, Hideaki;
Izumikawa, Keiichi;
Yamauchi, Yoshio;
Hirota, Kouji;
Nakayama, Hiroshi;
Takahashi, Nobuhiro

Publication type:

Article

Poly(A)-specific ribonuclease regulates the processing of small-subunit rRNAs in human cells.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 6, p. 3437, doi. 10.1093/nar/gkw1047

By:

Hideaki Ishikawa;
Harunori Yoshikawa;
Keiichi Izumikawa;
Yutaka Miura;
Masato Taoka;
Yuko Nobe;
Yoshio Yamauchi;
Hiroshi Nakayama;
Simpson, Richard J.;
Toshiaki Isobe;
Nobuhiro Takahashi

Publication type:

Article

Chtop (Chromatin target of Prmt1) auto-regulates its expression level via intron retention and nonsense-mediated decay of its own mRNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 20, p. 9847, doi. 10.1093/nar/gkw831

By:

Keiichi Izumikawa;
Harunori Yoshikawa;
Hideaki Ishikawa;
Yuko Nobe;
Yoshio Yamauchi;
Philipsen, Sjaak;
Simpson, Richard J.;
Toshiaki Isobe;
Nobuhiro Takahashi

Publication type:

Article

The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8951, doi. 10.1093/nar/gkw564

By:

Masato Taoka;
Yuko Nobe;
Yuka Yamaki;
Yoshio Yamauchi;
Hideaki Ishikawa;
Nobuhiro Takahashi;
Hiroshi Nakayama;
Toshiaki Isobe

Publication type:

Article

A mass spectrometry-based method for direct determination of pseudouridine in RNA.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 6, p. 1, doi. 10.1093/nar/gkv1462

By:

Yoshio Yamauchi;
Yuko Nobe;
Keiichi Izumikawa;
Daisuke Higo;
Yoko Yamagishi;
Nobuhiro Takahashi;
Hiroshi Nakayama;
Toshiaki Isobe;
Masato Taoka

Publication type:

Article

A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure of Schizosaccharomyces pombe ribosomal RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv560

By:

Masato Taoka;
Yuko Nobe;
Masayuki Hori;
Aiko Takeuchi;
Shunpei Masaki;
Yoshio Yamauchi;
Hiroshi Nakayama;
Nobuhiro Takahashi;
Toshiaki Isobe

Publication type:

Article

Identification of truncated forms of U1 snRNA reveals a novel RNA degradation pathway during snRNP biogenesis.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 4, p. 2708, doi. 10.1093/nar/gkt1271

By:

Ishikawa, Hideaki;
Nobe, Yuko;
Izumikawa, Keiichi;
Yoshikawa, Harunori;
Miyazawa, Naoki;
Terukina, Goro;
Kurokawa, Natsuki;
Taoka, Masato;
Yamauchi, Yoshio;
Nakayama, Hiroshi;
Isobe, Toshiaki;
Takahashi, Nobuhiro

Publication type:

Article

Low-fluence blue light-induced phosphorylation of Zmphot1 mediates the first positive phototropism.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 20, p. 5929, doi. 10.1093/jxb/erz344

By:

Suzuki, Hiromi;
Koshiba, Tomokazu;
Fujita, Chiharu;
Yamauchi, Yoshio;
Kimura, Taro;
Isobe, Toshiaki;
Sakai, Tatsuya;
Taoka, Masato;
Okamoto, Takashi

Publication type:

Article

Nobiletin enhances plasma Interleukin‐6 and C‐X‐C motif chemokine ligand 1 levels that are increased by treadmill running.

Published in:

Food Science & Nutrition, 2022, v. 10, n. 7, p. 2360, doi. 10.1002/fsn3.2844

By:

Suzuki, Toshihide;
Shimizu, Makoto;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

Expression of B4GALNT1, an essential glycosyltransferase for the synthesis of complex gangliosides, suppresses BACE1 degradation and modulates APP processing.

Published in:

Scientific Reports, 2016, p. 34505, doi. 10.1038/srep34505

By:

Yamaguchi, Tokiaki;
Yamauchi, Yoshio;
Furukawa, Keiko;
Ohmi, Yuhsuke;
Ohkawa, Yuki;
Zhang, Qing;
Okajima, Tetsuya;
Furukawa, Koichi

Publication type:

Article

RNA Cytidine Acetyltransferase of Small-Subunit Ribosomal RNA: Identification of Acetylation Sites and the Responsible Acetyltransferase in Fission Yeast, Schizosaccharomyces pombe.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112156

By:

Taoka, Masato;
Ishikawa, Daisuke;
Nobe, Yuko;
Ishikawa, Hideaki;
Yamauchi, Yoshio;
Terukina, Goro;
Nakayama, Hiroshi;
Hirota, Kouji;
Takahashi, Nobuhiro;
Isobe, Toshiaki

Publication type:

Article

Multiplicity of 5′ Cap Structures Present on Short RNAs.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102895

By:

Abdelhamid, Rehab F.;
Plessy, Charles;
Yamauchi, Yoshio;
Taoka, Masato;
de Hoon, Michiel;
Gingeras, Thomas R.;
Isobe, Toshiaki;
Carninci, Piero

Publication type:

Article

Identification of Proteins Enriched in Rice Egg or Sperm Cells by Single-Cell Proteomics.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0069578

By:

Abiko, Mafumi;
Furuta, Kensyo;
Yamauchi, Yoshio;
Fujita, Chiharu;
Taoka, Masato;
Isobe, Toshiaki;
Okamoto, Takashi

Publication type:

Article

Drug cytotoxicity screening using human intestinal organoids propagated with extensive cost-reduction strategies.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32438-2

By:

Takahashi, Yu;
Inoue, Yu;
Sato, Shintaro;
Okabe, Takayoshi;
Kojima, Hirotatsu;
Kiyono, Hiroshi;
Shimizu, Makoto;
Yamauchi, Yoshio;
Sato, Ryuichiro

Publication type:

Article

Promotive Effect of Lysozyme on the Ciliary Activity of the Human Nasal Mucosa.

Published in:

Acta Oto-Laryngologica, 1986, v. 101, n. 3/4, p. 290, doi. 10.3109/00016488609132840

By:

Hisamatsu, Ken-Ichi;
Yamauchi, Yoshio;
Uchida, Minoru;
Murakami, Yoshihiko

Publication type:

Article

Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

Published in:

Nature Biotechnology, 2003, v. 21, n. 6, p. 667, doi. 10.1038/nbt829

By:

Kaji, Hiroyuki;
Saito, Haruna;
Yamauchi, Yoshio;
Shinkawa, Takashi;
Taoka, Masato;
Hirabayashi, Jun;
Kasai, Ken-ichi;
Takahashi, Nobuhiro;
Isobe, Toshiaki

Publication type:

Article

Expression analysis of 0-series gangliosides in human cancer cell lines with monoclonal antibodies generated using knockout mice of ganglioside synthase genes.

Published in:

Glycobiology, 2016, v. 26, n. 9, p. 984, doi. 10.1093/glycob/cww049

By:

Robiul Hasan Bhuiyan;
Yuji Kondo;
Tokiaki Yamaguchi;
Noriyo Tokuda;
Yuki Ohkawa;
Noboru Hashimoto;
Yuhsuke Ohmi;
Yoshio Yamauchi;
Keiko Furukawa;
Tetsuya Okajima;
Koichi Furukawa

Publication type:

Article

Identification of protein markers for skeletal muscle‐derived extracellular vesicles (SkM‐EVs) by quantitative proteomics reveals how SkM‐EVs function in vivo.

Published in:

FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R3309

By:

Watanabe, Sho;
Sudo, Yuri;
Sakurai, Hidetoshi;
Sato, Ryuichiro;
Yamauchi, Yoshio

Publication type:

Article

Gangliosides are essential in the protection of inflammation and neurodegeneration via maintenance of lipid rafts: elucidation by a series of ganglioside-deficient mutant mice.

Published in:

Journal of Neurochemistry, 2011, v. 116, n. 5, p. 926, doi. 10.1111/j.1471-4159.2010.07067.x

By:

Ohmi, Yuhsuke;
Tajima, Orie;
Ohkawa, Yuki;
Yamauchi, Yoshio;
Sugiura, Yasuo;
Furukawa, Keiko;
Furukawa, Koichi

Publication type:

Article