Works by Yamashita, Akifumi

Results: 18

Two different dengue virus strains in the Japanese epidemics of 2014.
Published in:
Virus Genes, 2016, v. 52, n. 5, p. 722, doi. 10.1007/s11262-016-1356-4
By:
- Nakayama, Eri;
- Kotaki, Akira;
- Tajima, Shigeru;
- Kawada, Miki;
- Miura, Kuniharu;
- Gemma, Aki;
- Adachi, Takuya;
- Sekizuka, Tsuyoshi;
- Kato, Kengo;
- Yamashita, Akifumi;
- Moi, Meng;
- Ikeda, Makiko;
- Yagasaki, Kazumi;
- Shibasaki, Kenichi;
- Saijo, Masayuki;
- Kuroda, Makoto;
- Takasaki, Tomohiko
Publication type:
Article
Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.
Published in:
PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0212798
By:
- Iwamoto, Tomotada;
- Murase, Yoshiro;
- Yoshida, Shiomi;
- Aono, Akio;
- Kuroda, Makoto;
- Sekizuka, Tsuyoshi;
- Yamashita, Akifumi;
- Kato, Kengo;
- Takii, Takemasa;
- Arikawa, Kentaro;
- Kato, Seiya;
- Mitarai, Satoshi
Publication type:
Article
Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49219-5
By:
- Takii, Takemasa;
- Seki, Kouhei;
- Wakabayashi, Yasutaka;
- Morishige, Yuta;
- Sekizuka, Tsuyoshi;
- Yamashita, Akifumi;
- Kato, Kengo;
- Uchimura, Kazuhiro;
- Ohkado, Akihiro;
- Keicho, Naoto;
- Mitarai, Satoshi;
- Kuroda, Makoto;
- Kato, Seiya
Publication type:
Article
Human Monoclonal Antibodies Broadly Neutralizing against Influenza B Virus.
Published in:
PLoS Pathogens, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.ppat.1003150
By:
- Yasugi, Mayo;
- Kubota-Koketsu, Ritsuko;
- Yamashita, Akifumi;
- Kawashita, Norihito;
- Du, Anariwa;
- Sasaki, Tadahiro;
- Nishimura, Mitsuhiro;
- Misaki, Ryo;
- Kuhara, Motoki;
- Boonsathorn, Naphatsawan;
- Fujiyama, Kazuhito;
- Okuno, Yoshinobu;
- Nakaya, Takaaki;
- Ikuta, Kazuyoshi
Publication type:
Article
TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142951
By:
- Sekizuka, Tsuyoshi;
- Yamashita, Akifumi;
- Murase, Yoshiro;
- Iwamoto, Tomotada;
- Mitarai, Satoshi;
- Kato, Seiya;
- Kuroda, Makoto
Publication type:
Article
DGV: Dengue Genographic Viewer.
Published in:
Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00875
By:
- Akifumi Yamashita;
- Tetsuya Sakamoto;
- Tsuyoshi Sekizuka;
- Kengo Kato;
- Tomohiko Takasaki;
- Makoto Kuroda
Publication type:
Article
VirusTAP: Viral Genome-Targeted Assembly Pipeline.
Published in:
Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00032
By:
- Akifumi Yamashita;
- Tsuyoshi Sekizuka;
- Makoto Kuroda;
- Schürch, Anita;
- Yoshinori Ito;
- Zagordi, Osvaldo
Publication type:
Article
Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis.
Published in:
Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00824
By:
- Akiko Kinumaki;
- Tsuyoshi Sekizuka;
- Hiromichi Hamada;
- Kengo Kato;
- Akifumi Yamashita;
- Makoto Kuroda;
- Yildirim, Suleyman;
- Allen, Michael S.
Publication type:
Article
The habu genome reveals accelerated evolution of venom protein genes.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-28749-4
By:
- Shibata, Hiroki;
- Chijiwa, Takahito;
- Oda-Ueda, Naoko;
- Nakamura, Hitomi;
- Yamaguchi, Kazuaki;
- Hattori, Shousaku;
- Matsubara, Kazumi;
- Matsuda, Yoichi;
- Yamashita, Akifumi;
- Isomoto, Akiko;
- Mori, Kazuki;
- Tashiro, Kosuke;
- Kuhara, Satoru;
- Yamasaki, Shinichi;
- Fujie, Manabu;
- Goto, Hiroki;
- Koyanagi, Ryo;
- Takeuchi, Takeshi;
- Fukumaki, Yasuyuki;
- Ohno, Motonori
Publication type:
Article
Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02399
By:
- Takumi Motoya;
- Koo Nagasawa;
- Yuki Matsushima;
- Noriko Nagata;
- Akihide Ryo;
- Tsuyoshi Sekizuka;
- Akifumi Yamashita;
- Makoto Kuroda;
- Yukio Morita;
- Yoshiyuki Suzuki;
- Nobuya Sasaki;
- Kazuhiko Katayama;
- Hirokazu Kimura
Publication type:
Article
A Highly Conserved Region Between Amino Acids 221 and 266 of Dengue Virus Non-Structural Protein 1 Is a Major Epitope Region in Infected Patients.
Published in:
American Journal of Tropical Medicine & Hygiene, 2014, v. 91, n. 1, p. 146, doi. 10.4269/ajtmh.13-0624
By:
- Magot Diata Omokoko;
- Sabar Pambudi;
- Supranee Phanthanawiboon;
- Promsin Masrinoul;
- Chayanee Setthapramote;
- Tadahiro Sasaki;
- Motoki Kuhara;
- Pongrama Ramasoota;
- Akifumi Yamashita;
- Itaru Hirai;
- Kazuyoshi Ikuta;
- Takeshi Kurosu
Publication type:
Article
Analysis of genes causing hypertension and stroke in spontaneously hypertensive rats: Gene expression profiles in the brain.
Published in:
International Journal of Molecular Medicine, 2014, v. 33, n. 4, p. 887, doi. 10.3892/ijmm.2014.1631
By:
- MOMOKO YOSHIDA;
- YUKO WATANABE;
- KYOSUKE YAMANISHI;
- AKIFUMI YAMASHITA;
- HIDEYUKI YAMAMOTO;
- DAISUKE OKUZAKI;
- KAZUNORI SHIMADA;
- HIROSHI NOJIMA;
- TERUO YASUNAGA;
- HARUKI OKAMURA;
- HISATO MATSUNAGA;
- HIROMICHI YAMANISHI
Publication type:
Article
Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria.
Published in:
Gut Microbes, 2019, v. 10, n. 1, p. 77, doi. 10.1080/19490976.2018.1491265
By:
- Ito, Tamaki;
- Sekizuka, Tsuyoshi;
- Kishi, Norimi;
- Yamashita, Akifumi;
- Kuroda, Makoto
Publication type:
Article
Limited cross-reactivity of mouse monoclonal antibodies against Dengue virus capsid protein among four serotypes.
Published in:
Biologics: Targets & Therapy, 2012, v. 6, p. 409, doi. 10.2147/BTT.S37792
By:
- Noda, Megumi;
- Masrinoul, Promsin;
- Punkum, Chaweewan;
- Pipattanaboon, Chonlatip;
- Ramasoota, Pongrama;
- Setthapramote, Chayanee;
- Sasaki, Tadahiro;
- Sasayama, Mikiko;
- Yamashita, Akifumi;
- Kurosu, Takeshi;
- Ikuta, Kazuyoshi;
- Okabayashi, Tamaki
Publication type:
Article
Low Levels of Antibody-Dependent Enhancement in Vitro Using Viruses and Plasma from Dengue Patients.
Published in:
PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092173
By:
- Chaichana, Panjaporn;
- Okabayashi, Tamaki;
- Puiprom, Orapim;
- Sasayama, Mikiko;
- Sasaki, Tadahiro;
- Yamashita, Akifumi;
- Ramasoota, Pongrama;
- Kurosu, Takeshi;
- Ikuta, Kazuyoshi
Publication type:
Article
Emerging Antigenic Variants at the Antigenic Site Sb in Pandemic A(H1N1)2009 Influenza Virus in Japan Detected by a Human Monoclonal Antibody.
Published in:
PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077892
By:
- Yasugi, Mayo;
- Kubota-Koketsu, Ritsuko;
- Yamashita, Akifumi;
- Kawashita, Norihito;
- Du, Anariwa;
- Misaki, Ryo;
- Kuhara, Motoki;
- Boonsathorn, Naphatsawan;
- Fujiyama, Kazuhito;
- Okuno, Yoshinobu;
- Nakaya, Takaaki;
- Ikuta, Kazuyoshi
Publication type:
Article
Molecular Evolution of HIV-1 CRF01AE Env in Thai Patients.
Published in:
PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027098
By:
- Boonchawalit, Samatchaya;
- Jullaksorn, Duangrat;
- Uttiyoung, Jiraporn;
- Yowang, Amara;
- Krathong, Nongkran;
- Chautrakul, Sununta;
- Yamashita, Akifumi;
- Ikuta, Kazuyoshi;
- Roobsoong, Amornsak;
- Kanitvittaya, Sangkom;
- Sawanpanyalert, Pathom;
- Kameoka, Masanori
Publication type:
Article
Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High- Throughput Sequencing Approach.
Published in:
PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004219
By:
- Nakamura, Shota;
- Cheng-Song Yang;
- Sakon, Naomi;
- Ueda, Mayo;
- Tougan, Takahiro;
- Yamashita, Akifumi;
- Goto, Naohisa;
- Takahashi, Kazuo;
- Yasunaga, Teruo;
- Ikuta, Kazuyoshi;
- Mizutani, Tetsuya;
- Okamoto, Yoshiko;
- Tagami, Michihira;
- Morita, Ryoji;
- Maeda, Norihiro;
- Kawai, Jun;
- Hayashizaki, Yoshihide;
- Nagai, Yoshiyuki;
- Horii, Toshihiro;
- Iida, Tetsuya
Publication type:
Article