Works by Yamashita, Akifumi

Results: 18

Two different dengue virus strains in the Japanese epidemics of 2014.

Published in:

Virus Genes, 2016, v. 52, n. 5, p. 722, doi. 10.1007/s11262-016-1356-4

By:

Nakayama, Eri;
Kotaki, Akira;
Tajima, Shigeru;
Kawada, Miki;
Miura, Kuniharu;
Gemma, Aki;
Adachi, Takuya;
Sekizuka, Tsuyoshi;
Kato, Kengo;
Yamashita, Akifumi;
Moi, Meng;
Ikeda, Makiko;
Yagasaki, Kazumi;
Shibasaki, Kenichi;
Saijo, Masayuki;
Kuroda, Makoto;
Takasaki, Tomohiko

Publication type:

Article

Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02399

By:

Takumi Motoya;
Koo Nagasawa;
Yuki Matsushima;
Noriko Nagata;
Akihide Ryo;
Tsuyoshi Sekizuka;
Akifumi Yamashita;
Makoto Kuroda;
Yukio Morita;
Yoshiyuki Suzuki;
Nobuya Sasaki;
Kazuhiko Katayama;
Hirokazu Kimura

Publication type:

Article

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria.

Published in:

Gut Microbes, 2019, v. 10, n. 1, p. 77, doi. 10.1080/19490976.2018.1491265

By:

Ito, Tamaki;
Sekizuka, Tsuyoshi;
Kishi, Norimi;
Yamashita, Akifumi;
Kuroda, Makoto

Publication type:

Article

Whole-genome sequencing-based epidemiological analysis of anti-tuberculosis drug resistance genes in Japan in 2007: Application of the Genome Research for Asian Tuberculosis (GReAT) database.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49219-5

By:

Takii, Takemasa;
Seki, Kouhei;
Wakabayashi, Yasutaka;
Morishige, Yuta;
Sekizuka, Tsuyoshi;
Yamashita, Akifumi;
Kato, Kengo;
Uchimura, Kazuhiro;
Ohkado, Akihiro;
Keicho, Naoto;
Mitarai, Satoshi;
Kuroda, Makoto;
Kato, Seiya

Publication type:

Article

DGV: Dengue Genographic Viewer.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00875

By:

Akifumi Yamashita;
Tetsuya Sakamoto;
Tsuyoshi Sekizuka;
Kengo Kato;
Tomohiko Takasaki;
Makoto Kuroda

Publication type:

Article

VirusTAP: Viral Genome-Targeted Assembly Pipeline.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00032

By:

Akifumi Yamashita;
Tsuyoshi Sekizuka;
Makoto Kuroda;
Schürch, Anita;
Yoshinori Ito;
Zagordi, Osvaldo

Publication type:

Article

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00824

By:

Akiko Kinumaki;
Tsuyoshi Sekizuka;
Hiromichi Hamada;
Kengo Kato;
Akifumi Yamashita;
Makoto Kuroda;
Yildirim, Suleyman;
Allen, Michael S.

Publication type:

Article

Human Monoclonal Antibodies Broadly Neutralizing against Influenza B Virus.

Published in:

PLoS Pathogens, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.ppat.1003150

By:

Yasugi, Mayo;
Kubota-Koketsu, Ritsuko;
Yamashita, Akifumi;
Kawashita, Norihito;
Du, Anariwa;
Sasaki, Tadahiro;
Nishimura, Mitsuhiro;
Misaki, Ryo;
Kuhara, Motoki;
Boonsathorn, Naphatsawan;
Fujiyama, Kazuhito;
Okuno, Yoshinobu;
Nakaya, Takaaki;
Ikuta, Kazuyoshi

Publication type:

Article

The habu genome reveals accelerated evolution of venom protein genes.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-28749-4

By:

Shibata, Hiroki;
Chijiwa, Takahito;
Oda-Ueda, Naoko;
Nakamura, Hitomi;
Yamaguchi, Kazuaki;
Hattori, Shousaku;
Matsubara, Kazumi;
Matsuda, Yoichi;
Yamashita, Akifumi;
Isomoto, Akiko;
Mori, Kazuki;
Tashiro, Kosuke;
Kuhara, Satoru;
Yamasaki, Shinichi;
Fujie, Manabu;
Goto, Hiroki;
Koyanagi, Ryo;
Takeuchi, Takeshi;
Fukumaki, Yasuyuki;
Ohno, Motonori

Publication type:

Article

Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0212798

By:

Iwamoto, Tomotada;
Murase, Yoshiro;
Yoshida, Shiomi;
Aono, Akio;
Kuroda, Makoto;
Sekizuka, Tsuyoshi;
Yamashita, Akifumi;
Kato, Kengo;
Takii, Takemasa;
Arikawa, Kentaro;
Kato, Seiya;
Mitarai, Satoshi

Publication type:

Article

Limited cross-reactivity of mouse monoclonal antibodies against Dengue virus capsid protein among four serotypes.

Published in:

Biologics: Targets & Therapy, 2012, v. 6, p. 409, doi. 10.2147/BTT.S37792

By:

Noda, Megumi;
Masrinoul, Promsin;
Punkum, Chaweewan;
Pipattanaboon, Chonlatip;
Ramasoota, Pongrama;
Setthapramote, Chayanee;
Sasaki, Tadahiro;
Sasayama, Mikiko;
Yamashita, Akifumi;
Kurosu, Takeshi;
Ikuta, Kazuyoshi;
Okabayashi, Tamaki

Publication type:

Article

A Highly Conserved Region Between Amino Acids 221 and 266 of Dengue Virus Non-Structural Protein 1 Is a Major Epitope Region in Infected Patients.

Published in:

American Journal of Tropical Medicine & Hygiene, 2014, v. 91, n. 1, p. 146, doi. 10.4269/ajtmh.13-0624

By:

Magot Diata Omokoko;
Sabar Pambudi;
Supranee Phanthanawiboon;
Promsin Masrinoul;
Chayanee Setthapramote;
Tadahiro Sasaki;
Motoki Kuhara;
Pongrama Ramasoota;
Akifumi Yamashita;
Itaru Hirai;
Kazuyoshi Ikuta;
Takeshi Kurosu

Publication type:

Article

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142951

By:

Sekizuka, Tsuyoshi;
Yamashita, Akifumi;
Murase, Yoshiro;
Iwamoto, Tomotada;
Mitarai, Satoshi;
Kato, Seiya;
Kuroda, Makoto

Publication type:

Article

Low Levels of Antibody-Dependent Enhancement in Vitro Using Viruses and Plasma from Dengue Patients.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092173

By:

Chaichana, Panjaporn;
Okabayashi, Tamaki;
Puiprom, Orapim;
Sasayama, Mikiko;
Sasaki, Tadahiro;
Yamashita, Akifumi;
Ramasoota, Pongrama;
Kurosu, Takeshi;
Ikuta, Kazuyoshi

Publication type:

Article

Emerging Antigenic Variants at the Antigenic Site Sb in Pandemic A(H1N1)2009 Influenza Virus in Japan Detected by a Human Monoclonal Antibody.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077892

By:

Yasugi, Mayo;
Kubota-Koketsu, Ritsuko;
Yamashita, Akifumi;
Kawashita, Norihito;
Du, Anariwa;
Misaki, Ryo;
Kuhara, Motoki;
Boonsathorn, Naphatsawan;
Fujiyama, Kazuhito;
Okuno, Yoshinobu;
Nakaya, Takaaki;
Ikuta, Kazuyoshi

Publication type:

Article

Molecular Evolution of HIV-1 CRF01AE Env in Thai Patients.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027098

By:

Boonchawalit, Samatchaya;
Jullaksorn, Duangrat;
Uttiyoung, Jiraporn;
Yowang, Amara;
Krathong, Nongkran;
Chautrakul, Sununta;
Yamashita, Akifumi;
Ikuta, Kazuyoshi;
Roobsoong, Amornsak;
Kanitvittaya, Sangkom;
Sawanpanyalert, Pathom;
Kameoka, Masanori

Publication type:

Article

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High- Throughput Sequencing Approach.

Published in:

PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004219

By:

Nakamura, Shota;
Cheng-Song Yang;
Sakon, Naomi;
Ueda, Mayo;
Tougan, Takahiro;
Yamashita, Akifumi;
Goto, Naohisa;
Takahashi, Kazuo;
Yasunaga, Teruo;
Ikuta, Kazuyoshi;
Mizutani, Tetsuya;
Okamoto, Yoshiko;
Tagami, Michihira;
Morita, Ryoji;
Maeda, Norihiro;
Kawai, Jun;
Hayashizaki, Yoshihide;
Nagai, Yoshiyuki;
Horii, Toshihiro;
Iida, Tetsuya

Publication type:

Article

Analysis of genes causing hypertension and stroke in spontaneously hypertensive rats: Gene expression profiles in the brain.

Published in:

International Journal of Molecular Medicine, 2014, v. 33, n. 4, p. 887, doi. 10.3892/ijmm.2014.1631

By:

MOMOKO YOSHIDA;
YUKO WATANABE;
KYOSUKE YAMANISHI;
AKIFUMI YAMASHITA;
HIDEYUKI YAMAMOTO;
DAISUKE OKUZAKI;
KAZUNORI SHIMADA;
HIROSHI NOJIMA;
TERUO YASUNAGA;
HARUKI OKAMURA;
HISATO MATSUNAGA;
HIROMICHI YAMANISHI

Publication type:

Article