Works by Xuhua Xia

Results: 84

Phylogeographic Analysis for Understanding Origin, Speciation, and Biogeographic Expansion of Invasive Asian Hornet, Vespa velutina Lepeletier, 1836 (Hymenoptera, Vespidae).

Published in:

Life (2075-1729), 2024, v. 14, n. 10, p. 1293, doi. 10.3390/life14101293

By:

Xia, Xuhua

Publication type:

Article

Phylogeographic Reconstruction to Trace the Source Population of Asian Giant Hornet Caught in Nanaimo in Canada and Blaine in the USA.

Published in:

Life (2075-1729), 2024, v. 14, n. 3, p. 283, doi. 10.3390/life14030283

By:

Freeman, Alexa;
Xia, Xuhua

Publication type:

Article

Post-Alignment Adjustment and Its Automation.

Published in:

Genes, 2021, v. 12, n. 11, p. 1809, doi. 10.3390/genes12111809

By:

Xia, Xuhua

Publication type:

Article

Beyond Trees: Regulons and Regulatory Motif Characterization.

Published in:

Genes, 2020, v. 11, n. 9, p. 995, doi. 10.3390/genes11090995

By:

Xia, Xuhua

Publication type:

Article

AMADA: analysis of microarray data.

Published in:

Bioinformatics, 2001, v. 17, n. 6, p. 569, doi. 10.1093/bioinformatics/17.6.569

By:

Xuhua Xia;
Zheng Xie

Publication type:

Article

Horizontal Gene Transfer and Drug Resistance Involving Mycobacterium tuberculosis.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 9, p. 1367, doi. 10.3390/antibiotics12091367

By:

Xia, Xuhua

Publication type:

Article

Author Correction: Predicting mammalian species at risk of being infected by SARS-CoV-2 from an ACE2 perspective.

Published in:

2021

By:

Wei, Yulong;
Aris, Parisa;
Farookhi, Heba;
Xia, Xuhua

Publication type:

Correction Notice

A General Model of Codon Bias Due to GC Mutational Bias.

Published in:

PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013431

By:

Palidwor, Gareth A.;
Perkins, Theodore J.;
Xuhua Xia

Publication type:

Article

Defining Global Neuroendocrine Gene Expression Patterns Associated with Reproductive Seasonality in Fish.

Published in:

PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005816

By:

Dapeng Zhang;
Huiling Xiong;
Mennigen, Jan A.;
Popesku, Jason T.;
Marlatt, Vicki L.;
Martyniuk, Christopher J.;
Crump, Kate;
Cossins, Andrew R.;
Xuhua Xia;
Trudeau, Vance L.

Publication type:

Article

Strong Eukaryotic IRESs Have Weak Secondary Structure.

Published in:

PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004136

By:

Xuhua Xia;
Holcik, Martin

Publication type:

Article

Preservation of Genes Involved in Sterol Metabolism in Cholesterol Auxotrophs: Facts and Hypotheses.

Published in:

PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0002883

By:

Vinci, Giovanna;
Xuhua Xia;
Veitia, Reiner A.

Publication type:

Article

Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/683509

By:

Aris-Brosou, Stéephane;
Xuhua Xia

Publication type:

Article

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata.

Published in:

Systematic Biology, 2012, v. 61, n. 4, p. 675, doi. 10.1093/sysbio/sys025

By:

Vos, Rutger A.;
Balhoff, James P.;
Caravas, Jason A.;
Holder, Mark T.;
Lapp, Hilmar;
Maddison, Wayne P.;
Midford, Peter E.;
Priyam, Anurag;
Sukumaran, Jeet;
Xia, Xuhua;
Stoltzfus, Arlin

Publication type:

Article

18S Ribosomal RNA and Tetrapod Phylogeny.

Published in:

Systematic Biology, 2003, v. 52, n. 3, p. 283, doi. 10.1080/10635150390196948

By:

Xia, Xuhua;
Xie, Zheng;
Kjer, Karl M.

Publication type:

Article

Factors Affecting Splicing Strength of Yeast Genes.

Published in:

Comparative & Functional Genomics, 2011, p. 1, doi. 10.1155/2011/212146

By:

Pinchao Ma;
Xuhua Xia

Publication type:

Article

Mural granulosa cell gene expression associated with oocyte developmental competence.

Published in:

Journal of Ovarian Research, 2010, v. 3, n. 1, p. 1, doi. 10.1186/1757-2215-3-6

By:

Jin-Yi Jiang;
Huiling Xiong;
Mingju Cao;
Xuhua Xia;
Marc-Andre Sirard;
Tsang, Benjamin K.

Publication type:

Article

Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates.

Published in:

Evolutionary Bioinformatics, 2020, v. 16, p. N.PAG, doi. 10.1177/1176934320903735

By:

Noah, Katherine E;
Hao, Jiasheng;
Li, Luyan;
Sun, Xiaoyan;
Foley, Brian;
Yang, Qun;
Xia, Xuhua

Publication type:

Article

Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates.

Published in:

Evolutionary Bioinformatics, 2020, p. 1, doi. 10.1177/1176934320903735

By:

Noah, Katherine E;
Hao, Jiasheng;
Li, Luyan;
Sun, Xiaoyan;
Foley, Brian;
Yang, Qun;
Xia, Xuhua

Publication type:

Article

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution.

Published in:

Journal of Heredity, 2017, v. 108, n. 4, p. 431, doi. 10.1093/jhered/esx033

By:

Xuhua Xia

Publication type:

Article

The Role of +4U as an Extended Translation Termination Signal in Bacteria.

Published in:

Genetics, 2017, v. 205, n. 2, p. 539, doi. 10.1534/genetics.116.193961

By:

Yulong Wei;
Xuhua Xia

Publication type:

Article

A Major Controversy in Codon-Anticodon Adaptation Resolved by a New Codon Usage Index.

Published in:

Genetics, 2015, v. 199, n. 2, p. 573, doi. 10.1534/genetics.114.172106

By:

Xia, Xuhua

Publication type:

Article

The Effect of Mutation and Selection on Codon Adaptation in Escherichia coli Bacteriophage.

Published in:

Genetics, 2014, v. 197, n. 1, p. 301, doi. 10.1534/genetics.114.162842

By:

Chithambaram, Shivapriya;
Prabhakaran, Ramanandan;
Xuhua Xia

Publication type:

Article

Translation Initiation: A Regulatory Role for Poly(A) Tracts in Front of the AUG Codon in Saccharomyces cerevisiae.

Published in:

Genetics, 2011, v. 189, n. 2, p. 469, doi. 10.1534/genetics.111.132068

By:

Xia, Xuhua;
MacKay, Vivian;
Yao, Xiaoquan;
Wu, Jianhua;
Miura, Fumihito;
Ito, Takashi;
Morris, David R.

Publication type:

Article

Genomic Changes in Nucleotide and Dinucleotide Frequencies in Pasteurella multocida Cultured Under High Temperature.

Published in:

Genetics, 2002, v. 161, n. 4, p. 1385, doi. 10.1093/genetics/161.4.1385

By:

Xuhua Xia;
Ting Wei;
Zheng Xie;
Danchin, Antoine

Publication type:

Article

Selection preserves Ubiquitin Specific Protease 4 alternative exon skipping in therian mammals.

Published in:

Scientific Reports, 2016, p. 20039, doi. 10.1038/srep20039

By:

Vlasschaert, Caitlyn;
Xia, Xuhua;
Gray, Douglas A.

Publication type:

Article

The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium.

Published in:

Genome, 2014, v. 57, n. 9, p. 507, doi. 10.1139/gen-2014-0158

By:

Nikbakht, Hamid;
Xia, Xuhua;
Hickey, Donal A.;
Golding, B.

Publication type:

Article

Genetic Variation in Clones ofPseudomonas pseudoalcaligenesAfter Ten Months of Selection in Different Thermal Environments in the Laboratory.

Published in:

Current Microbiology, 2005, v. 50, n. 5, p. 238, doi. 10.1007/s00284-004-4449-6

By:

Bihong Shi;
Xuhua Xia

Publication type:

Article

Morphological Changes of Pseudomonas pseudoalcaligenes in Response to Temperature Selection.

Published in:

Current Microbiology, 2003, v. 46, n. 2, p. 0120, doi. 10.1007/s00284-002-3824-4

By:

Shi, Bihong;
Xia, Xuhua

Publication type:

Article

Imputing missing distances in molecular phylogenetics.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5321

By:

Xuhua Xia

Publication type:

Article

Position Weight Matrix, Gibbs Sampler, and the Associated Significance Tests in Motif Characterization and Prediction.

Published in:

Scientifica, 2012, p. 1, doi. 10.6064/2012/917540

By:

Xuhua Xia

Publication type:

Article

Predicting mammalian species at risk of being infected by SARS-CoV-2 from an ACE2 perspective.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80573-x

By:

Wei, Yulong;
Aris, Parisa;
Farookhi, Heba;
Xia, Xuhua

Publication type:

Article

PGT: Visualizing temporal and spatial biogeographic patterns.

Published in:

Global Ecology & Biogeography, 2019, v. 28, n. 8, p. 1195, doi. 10.1111/geb.12914

By:

Xia, Xuhua;
Hampe, Arndt

Publication type:

Article

In Silico Exploration of Microtubule Agent Griseofulvin and Its Derivatives Interactions with Different Human β-Tubulin Isotypes.

Published in:

Molecules, 2023, v. 28, n. 5, p. 2384, doi. 10.3390/molecules28052384

By:

Aris, Parisa;
Mohamadzadeh, Masoud;
Kruglikov, Alibek;
Askari Rad, Mahbubeh;
Xia, Xuhua

Publication type:

Article

Griseofulvin: An Updated Overview of Old and Current Knowledge.

Published in:

Molecules, 2022, v. 27, n. 20, p. 7034, doi. 10.3390/molecules27207034

By:

Aris, Parisa;
Wei, Yulong;
Mohamadzadeh, Masoud;
Xia, Xuhua

Publication type:

Article

Differential Selection for Translation Efficiency Shapes Translation Machineries in Bacterial Species.

Published in:

Microorganisms, 2024, v. 12, n. 4, p. 768, doi. 10.3390/microorganisms12040768

By:

Farookhi, Heba;
Xia, Xuhua

Publication type:

Article

Does Saccharomyces cerevisiae Require Specific Post-Translational Silencing against Leaky Translation of Hac1up?

Published in:

Microorganisms, 2021, v. 9, n. 3, p. 620, doi. 10.3390/microorganisms9030620

By:

Tehfe, Ali;
Roseshter, Talia;
Wei, Yulong;
Xia, Xuhua;
Yurimoto, Hiroya

Publication type:

Article

Identification of host receptors for viral entry and beyond: a perspective from the spike of SARS-CoV-2.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1188249

By:

Xuhua Xia

Publication type:

Article

Differential selection and mutation between dsDNA and ssDNA phages shape the evolution of their genomic AT percentage.

Published in:

BMC Genetics, 2005, v. 6, p. 20, doi. 10.1186/1471-2156-6-20

By:

Xuhua Xia;
Kwok Yung Yuen

Publication type:

Article

Improving Phylogenetic Signals of Mitochondrial Genes Using a New Method of Codon Degeneration.

Published in:

Life (2075-1729), 2020, v. 10, n. 9, p. 171, doi. 10.3390/life10090171

By:

Xia, Xuhua

Publication type:

Article

Rooting and Dating Large SARS-CoV-2 Trees by Modeling Evolutionary Rate as a Function of Time.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 3, p. 684, doi. 10.3390/v15030684

By:

Xia, Xuhua

Publication type:

Article

Dating the Common Ancestor from an NCBI Tree of 83688 High-Quality and Full-Length SARS-CoV-2 Genomes.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 9, p. 1790, doi. 10.3390/v13091790

By:

Xia, Xuhua

Publication type:

Article

Domains and Functions of Spike Protein in SARS-Cov-2 in the Context of Vaccine Design.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 1, p. 109, doi. 10.3390/v13010109

By:

Xia, Xuhua;
Lundstrom, Kenneth;
Aljabali, Alaa. A. A.

Publication type:

Article

Unique Shine–Dalgarno Sequences in Cyanobacteria and Chloroplasts Reveal Evolutionary Differences in Their Translation Initiation.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 11, p. 3194, doi. 10.1093/gbe/evz227

By:

Wei, Yulong;
Xia, Xuhua

Publication type:

Article

The Evolution and Functional Diversification of the Deubiquitinating Enzyme Superfamily.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 3, p. 558, doi. 10.1093/gbe/evx020

By:

Vlasschaert, Caitlyn;
Cook, David;
Xuhua Xia;
Gray, Douglas A.

Publication type:

Article

Phylogenetic Relationship Among Horseshoe Crab Species: Effect of Substitution Models on Phylogenetic Analyses

Published in:

Systematic Biology, 2000, v. 49, n. 1, p. 87, doi. 10.1080/10635150050207401

By:

Xia, Xuhua

Publication type:

Article

Clinical characteristics of hypercalcemic crises in a tertiary children's hospital.

Published in:

Endocrine (1355008X), 2023, v. 81, n. 1, p. 175, doi. 10.1007/s12020-023-03347-1

By:

Xia, Xuhua;
Cao, Jie;
Long, Chunli;
Chen, Xin;
Zheng, Jiajia

Publication type:

Article

Cytosine Usage Modulates the Correlation between CDS Length and CG Content in Prokaryotic Genomes.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 7, p. 1450, doi. 10.1093/molbev/msl012

By:

Xuhua Xia;
Huaichun Wang;
Zheng Xie;
Carullo, Malisa;
Huang Huang;
Hickey, Donal

Publication type:

Article

Protein Structure, Neighbor Effect, and a New Index of Amino Acid Dissimilarities.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 1, p. 58, doi. 10.1093/oxfordjournals.molbev.a003982

By:

Xia, Xuhua;
Xie, Zheng

Publication type:

Article

Detailed Dissection and Critical Evaluation of the Pfizer/BioNTech and Moderna mRNA Vaccines.

Published in:

Vaccines, 2021, v. 9, n. 7, p. 734, doi. 10.3390/vaccines9070734

By:

Xia, Xuhua

Publication type:

Article

How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and...

Published in:

Genetics, 1998, v. 149, n. 1, p. 37, doi. 10.1093/genetics/149.1.37

By:

Xia, Xuhua;
Clark, A.G.

Publication type:

Article