Found: 13

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  • The clear cell sarcoma functional genomic landscape.

    Published in:
    2021
    By:
    • Panza, Emanuele;
    • Ozenberger, Benjamin B.;
    • Straessler, Krystal M.;
    • Barrott, Jared J.;
    • Li Li;
    • Yanliang Wang;
    • Mingchao Xie;
    • Boulet, Anne;
    • Titen, Simon W. A.;
    • Mason, Clinton C.;
    • Lazar, Alexander J.;
    • Li Ding;
    • Capecchi, Mario R.;
    • Jones, Kevin B.;
    • Li, Li;
    • Wang, Yanliang;
    • Xie, Mingchao;
    • Ding, Li;
    • Titen, Simon Wa
    Publication type:
    journal article

  • Age-related mutations associated with clonal hematopoietic expansion and malignancies.

    Published in:
    Nature Medicine, 2014, v. 20, n. 12, p. 1472, doi. 10.1038/nm.3733
    By:
    • Xie, Mingchao;
    • Lu, Charles;
    • Wang, Jiayin;
    • McLellan, Michael D;
    • Johnson, Kimberly J;
    • Wendl, Michael C;
    • McMichael, Joshua F;
    • Schmidt, Heather K;
    • Yellapantula, Venkata;
    • Miller, Christopher A;
    • Ozenberger, Bradley A;
    • Welch, John S;
    • Link, Daniel C;
    • Walter, Matthew J;
    • Mardis, Elaine R;
    • Dipersio, John F;
    • Chen, Feng;
    • Wilson, Richard K;
    • Ley, Timothy J;
    • Ding, Li
    Publication type:
    Article

  • DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.

    Published in:
    Nature Genetics, 2013, v. 45, n. 7, p. 836, doi. 10.1038/ng.2649
    By:
    • Xie, Mingchao;
    • Hong, Chibo;
    • Zhang, Bo;
    • Lowdon, Rebecca F;
    • Xing, Xiaoyun;
    • Li, Daofeng;
    • Zhou, Xin;
    • Lee, Hyung Joo;
    • Maire, Cecile L;
    • Ligon, Keith L;
    • Gascard, Philippe;
    • Sigaroudinia, Mahvash;
    • Tlsty, Thea D;
    • Kadlecek, Theresa;
    • Weiss, Arthur;
    • O'Geen, Henriette;
    • Farnham, Peggy J;
    • Madden, Pamela A F;
    • Mungall, Andrew J;
    • Tam, Angela
    Publication type:
    Article

  • The Human Epigenome Browser at Washington University.

    Published in:
    Nature Methods, 2011, v. 8, n. 12, p. 989, doi. 10.1038/nmeth.1772
    By:
    • Zhou, Xin;
    • Maricque, Brett;
    • Xie, Mingchao;
    • Li, Daofeng;
    • Sundaram, Vasavi;
    • Martin, Eric A;
    • Koebbe, Brian C;
    • Nielsen, Cydney;
    • Hirst, Martin;
    • Farnham, Peggy;
    • Kuhn, Robert M;
    • Zhu, Jingchun;
    • Smirnov, Ivan;
    • Kent, W James;
    • Haussler, David;
    • Madden, Pamela A F;
    • Costello, Joseph F;
    • Wang, Ting
    Publication type:
    Article

  • Divergent viral presentation among human tumors and adjacent normal tissues.

    Published in:
    Scientific Reports, 2016, p. 28294, doi. 10.1038/srep28294
    By:
    • Cao, Song;
    • Wendl, Michael C.;
    • Wyczalkowski, Matthew A.;
    • Wylie, Kristine;
    • Ye, Kai;
    • Jayasinghe, Reyka;
    • Xie, Mingchao;
    • Wu, Song;
    • Niu, Beifang;
    • Grubb, Robert;
    • Johnson, Kimberly J.;
    • Gay, Hiram;
    • Chen, Ken;
    • Rader, Janet S.;
    • Dipersio, John F.;
    • Chen, Feng;
    • Ding, Li
    Publication type:
    Article

  • Landscape of homologous recombination deficiencies in solid tumours: analyses of two independent genomic datasets.

    Published in:
    2022
    By:
    • Lai, Zhongwu;
    • Brosnan, Matthew;
    • Sokol, Ethan S.;
    • Xie, Mingchao;
    • Dry, Jonathan R.;
    • Harrington, Elizabeth A.;
    • Barrett, J. Carl;
    • Hodgson, Darren
    Publication type:
    journal article

  • Patterns and functional implications of rare germline variants across 12 cancer types.

    Published in:
    Nature Communications, 2015, v. 6, n. 12, p. 10086, doi. 10.1038/ncomms10086
    By:
    • Lu, Charles;
    • Xie, Mingchao;
    • Wendl, Michael C.;
    • Wang, Jiayin;
    • McLellan, Michael D.;
    • Leiserson, Mark D. M.;
    • Huang, Kuan-lin;
    • Wyczalkowski, Matthew A.;
    • Jayasinghe, Reyka;
    • Banerjee, Tapahsama;
    • Ning, Jie;
    • Tripathi, Piyush;
    • Zhang, Qunyuan;
    • Niu, Beifang;
    • Ye, Kai;
    • Schmidt, Heather K.;
    • Fulton, Robert S.;
    • McMichael, Joshua F.;
    • Batra, Prag;
    • Kandoth, Cyriac
    Publication type:
    Article

  • Integrated analysis of germline and somatic variants in ovarian cancer.

    Published in:
    Nature Communications, 2014, v. 5, n. 1, p. 3156, doi. 10.1038/ncomms4156
    By:
    • Kanchi, Krishna L.;
    • Johnson, Kimberly J.;
    • Lu, Charles;
    • McLellan, Michael D.;
    • Leiserson, Mark D. M.;
    • Wendl, Michael C.;
    • Zhang, Qunyuan;
    • Koboldt, Daniel C.;
    • Xie, Mingchao;
    • Kandoth, Cyriac;
    • McMichael, Joshua F.;
    • Wyczalkowski, Matthew A.;
    • Larson, David E.;
    • Schmidt, Heather K.;
    • Miller, Christopher A.;
    • Fulton, Robert S.;
    • Spellman, Paul T.;
    • Mardis, Elaine R.;
    • Druley, Todd E.;
    • Graubert, Timothy A.
    Publication type:
    Article

  • Molecular classification and biomarkers of outcome with immunotherapy in extensive-stage small-cell lung cancer: analyses of the CASPIAN phase 3 study.

    Published in:
    Molecular Cancer, 2024, v. 23, p. 1, doi. 10.1186/s12943-024-02014-x
    By:
    • Xie, Mingchao;
    • Vuko, Miljenka;
    • Rodriguez-Canales, Jaime;
    • Zimmermann, Johannes;
    • Schick, Markus;
    • O'Brien, Cathy;
    • Paz-Ares, Luis;
    • Goldman, Jonathan W.;
    • Garassino, Marina Chiara;
    • Gay, Carl M.;
    • Heymach, John V.;
    • Jiang, Haiyi;
    • Barrett, J. Carl;
    • Stewart, Ross A.;
    • Lai, Zhongwu;
    • Byers, Lauren A.;
    • Rudin, Charles M.;
    • Shrestha, Yashaswi
    Publication type:
    Article

  • Mutational landscape and significance across 12 major cancer types.

    Published in:
    Nature, 2013, v. 502, n. 7471, p. 333, doi. 10.1038/nature12634
    By:
    • Kandoth, Cyriac;
    • McLellan, Michael D.;
    • Vandin, Fabio;
    • Ye, Kai;
    • Niu, Beifang;
    • Lu, Charles;
    • Xie, Mingchao;
    • Zhang, Qunyuan;
    • McMichael, Joshua F.;
    • Wyczalkowski, Matthew A.;
    • Leiserson, Mark D. M.;
    • Miller, Christopher A.;
    • Welch, John S.;
    • Walter, Matthew J.;
    • Wendl, Michael C.;
    • Ley, Timothy J.;
    • Wilson, Richard K.;
    • Raphael, Benjamin J.;
    • Ding, Li
    Publication type:
    Article

  • High Frequency Strand Slippage Mutations in CTCF in MSI-Positive Endometrial Cancers.

    Published in:
    Human Mutation, 2014, v. 35, n. 1, p. 63, doi. 10.1002/humu.22463
    By:
    • Zighelboim, Israel;
    • Mutch, David G.;
    • Knapp, Amy;
    • Ding, Li;
    • Xie, Mingchao;
    • Cohn, David E.;
    • Goodfellow, Paul J.
    Publication type:
    Article

  • MIRMMR: binary classification of microsatellite instability using methylation and mutations.

    Published in:
    Bioinformatics, 2017, v. 33, n. 23, p. 3799, doi. 10.1093/bioinformatics/btx507
    By:
    • Foltz, Steven M.;
    • Wen-Wei Liang;
    • Mingchao Xie;
    • Li Ding
    Publication type:
    Article

  • MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

    Published in:
    Bioinformatics, 2014, v. 30, n. 7, p. 1015, doi. 10.1093/bioinformatics/btt755
    By:
    • Niu, Beifang;
    • Ye, Kai;
    • Zhang, Qunyuan;
    • Lu, Charles;
    • Xie, Mingchao;
    • McLellan, Michael D.;
    • Wendl, Michael C.;
    • Ding, Li
    Publication type:
    Article