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Coordinated demethylation of H3K9 and H3K27 is required for rapid inflammatory responses of endothelial cells.
Published in:
EMBO Journal, 2020, v. 39, n. 7, p. 1, doi. 10.15252/embj.2019103949
By:
- Higashijima, Yoshiki;
- Matsui, Yusuke;
- Shimamura, Teppei;
- Nakaki, Ryo;
- Nagai, Nao;
- Tsutsumi, Shuichi;
- Abe, Yohei;
- Link, Verena M;
- Osaka, Mizuko;
- Yoshida, Masayuki;
- Watanabe, Ryo;
- Tanaka, Toshihiro;
- Taguchi, Akashi;
- Miura, Mai;
- Ruan, Xiaoan;
- Li, Guoliang;
- Inoue, Tsuyoshi;
- Nangaku, Masaomi;
- Kimura, Hiroshi;
- Furukawa, Tetsushi
Publication type:
Article
The draft genome of sweet orange (Citrus sinensis).
Published in:
Nature Genetics, 2013, v. 45, n. 1, p. 59, doi. 10.1038/ng.2472
By:
- Xu, Qiang;
- Chen, Ling-Ling;
- Ruan, Xiaoan;
- Chen, Dijun;
- Zhu, Andan;
- Chen, Chunli;
- Bertrand, Denis;
- Jiao, Wen-Biao;
- Hao, Bao-Hai;
- Lyon, Matthew P;
- Chen, Jiongjiong;
- Gao, Song;
- Xing, Feng;
- Lan, Hong;
- Chang, Ji-Wei;
- Ge, Xianhong;
- Lei, Yang;
- Hu, Qun;
- Miao, Yin;
- Wang, Lun
Publication type:
Article
The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres.
Published in:
Scientific Reports, 2015, v. 5, n. 1, p. 17662, doi. 10.1038/srep17662
By:
- Yuan, Daojun;
- Tang, Zhonghui;
- Wang, Maojun;
- Gao, Wenhui;
- Tu, Lili;
- Jin, Xin;
- Chen, Lingling;
- He, Yonghui;
- Zhang, Lin;
- Zhu, Longfu;
- Li, Yang;
- Liang, Qiqi;
- Lin, Zhongxu;
- Yang, Xiyan;
- Liu, Nian;
- Jin, Shuangxia;
- Lei, Yang;
- Ding, Yuanhao;
- Li, Guoliang;
- Ruan, Xiaoan
Publication type:
Article
Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0137526
By:
- Buisine, Nicolas;
- Ruan, Xiaoan;
- Bilesimo, Patrice;
- Grimaldi, Alexis;
- Alfama, Gladys;
- Ariyaratne, Pramila;
- Mulawadi, Fabianus;
- Chen, Jieqi;
- Sung, Wing-Kin;
- Liu, Edison T.;
- Demeneix, Barbara A.;
- Ruan, Yijun;
- Sachs, Laurent M.
Publication type:
Article
Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons.
Published in:
PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0046152
By:
- Fei Yao;
- Ariyaratne, Pramila N.;
- Hillmer, Axel M.;
- Wah Heng Lee;
- Guoliang Li;
- Teo, Audrey S. M.;
- Xing Yi Woo;
- Zhenshui Zhang;
- Jieqi P. Chen;
- Wan Ting Poh;
- Zawack, Kelson F. B.;
- Chee Seng Chan;
- See Ting Leong;
- Say Chuan Neo;
- Poh Sum D. Cho;
- Song Gao;
- Nagarajan, Niranjan;
- Thoreau, Hervé;
- Shahab, Atif;
- Ruan, Xiaoan
Publication type:
Article
VDR-mediated gene expression patterns in resting human coronary artery smooth muscle cells.
Published in:
Journal of Cellular Biochemistry, 2007, v. 100, n. 6, p. 1395, doi. 10.1002/jcb.21133
By:
- Wu-Wong, J. Ruth;
- Nakane, Masaki;
- Ma, Junli;
- Ruan, Xiaoan;
- Kroeger, Paul E.
Publication type:
Article
TNF? signals through specialized factories where responsive coding and miRNA genes are transcribed.
Published in:
EMBO Journal, 2012, v. 31, n. 23, p. 4404, doi. 10.1038/emboj.2012.288
By:
- Papantonis, Argyris;
- Kohro, Takahide;
- Baboo, Sabyasachi;
- Larkin, Joshua D;
- Deng, Binwei;
- Short, Patrick;
- Tsutsumi, Shuichi;
- Taylor, Stephen;
- Kanki, Yasuharu;
- Kobayashi, Mika;
- Li, Guoliang;
- Poh, Huay-Mei;
- Ruan, Xiaoan;
- Aburatani, Hiroyuki;
- Ruan, Yijun;
- Kodama, Tatsuhiko;
- Wada, Youichiro;
- Cook, Peter R
Publication type:
Article
siRNA-mediated off-target gene silencing triggered by a 7 nt complementation.
Published in:
Nucleic Acids Research, 2005, v. 33, n. 14, p. 4527, doi. 10.1093/nar/gki762
By:
- Lin, Xiaoyu;
- Ruan, Xiaoan;
- Anderson, Mark G.;
- McDowell, Jeffrey A.;
- Kroeger, Paul E.;
- Fesik, Stephen W.;
- Shen, Yu
Publication type:
Article
The Genome of C57BL/6J "Eve", the Mother of the Laboratory Mouse Genome Reference Strain.
Published in:
G3: Genes | Genomes | Genetics, 2019, v. 9, n. 6, p. 1795, doi. 10.1534/g3.119.400071
By:
- Sarsani, Vishal Kumar;
- Raghupathy, Narayanan;
- Fiddes, Ian T.;
- Armstrong, Joel;
- Thibaud-Nissen, Francoise;
- Zinder, Oraya;
- Bolisetty, Mohan;
- Howe, Kerstin;
- Hinerfeld, Doug;
- Xiaoan Ruan;
- Rowe, Lucy;
- Barter, Mary;
- Ananda, Guruprasad;
- Paten, Benedict;
- Weinstock, George M.;
- Churchill, Gary A.;
- Wiles, Michael V.;
- Schneider, Valerie A.;
- Srivastava, Anuj;
- Reinholdt, Laura G.
Publication type:
Article
Cross-enhancement of ANGPTL4 transcription by HIF1 alpha and PPAR beta/delta is the result of the conformational proximity of two response elements.
Published in:
Genome Biology, 2014, v. 15, n. 4, p. 1, doi. 10.1186/gb-2014-15-4-r63
By:
- Tsuyoshi Inoue;
- Takahide Kohro;
- Toshiya Tanaka;
- Yasuharu Kanki;
- Guoliang Li;
- Huay-Mei Poh;
- Imari Mimura;
- Mika Kobayashi;
- Akashi Taguchi;
- Takashi Maejima;
- Jun-ichi Suehiro;
- Akira Sugiyama;
- Kiyomi Kaneki;
- Hirofumi Aruga;
- Shoulian Dong;
- Stevens, Junko F.;
- Shogo Yamamoto;
- Shuichi Tsutsumi;
- Toshiro Fujita;
- Xiaoan Ruan
Publication type:
Article
Sequencing of E. coli strain UTI89 on multiple sequencing platforms.
Published in:
BMC Research Notes, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13104-020-05335-4
By:
- Fenlon, Shannon N.;
- Chee, Yuemin Celina;
- Chee, Jacqueline Lai Yuen;
- Choy, Yeen Hui;
- Khng, Alexis Jiaying;
- Liow, Lu Ting;
- Mehershahi, Kurosh S.;
- Ruan, Xiaoan;
- Turner, Stephen W.;
- Yao, Fei;
- Chen, Swaine L.
Publication type:
Article
Expression of VDR and CYP24A1 mRNA in human tumors.
Published in:
Cancer Chemotherapy & Pharmacology, 2006, v. 57, n. 2, p. 234, doi. 10.1007/s00280-005-0059-7
By:
- Anderson, Mark;
- Nakane, Masaki;
- Xiaoan Ruan;
- Kroeger, Paul E.;
- Wu-Wong, J. Ruth
Publication type:
Article
Expression of VDR and CYP24A1 mRNA in human tumors.
Published in:
2006
By:
- Anderson, Mark G;
- Nakane, Masaki;
- Ruan, Xiaoan;
- Kroeger, Paul E;
- Wu-Wong, J Ruth
Publication type:
journal article
In situ Chromatin Interaction Analysis Using Paired-End Tag Sequencing.
Published in:
Current Protocols, 2021, v. 1, n. 8, p. 1, doi. 10.1002/cpz1.174
By:
- Ping Wang;
- Yuliang Feng;
- Kun Zhu;
- Haoxi Chai;
- Ya-ting Chang;
- Xiaofei Yang;
- Xiyuan Liu;
- Chen Shen;
- Gega, Eva;
- Byoungkoo Lee;
- Minji Kim;
- Xiaoan Ruan;
- Yijun Ruan
Publication type:
Article
Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02030-2
By:
- Wang, Ping;
- Tang, Zhonghui;
- Lee, Byoungkoo;
- Zhu, Jacqueline Jufen;
- Cai, Liuyang;
- Szalaj, Przemyslaw;
- Tian, Simon Zhongyuan;
- Zheng, Meizhen;
- Plewczynski, Dariusz;
- Ruan, Xiaoan;
- Liu, Edison T.;
- Wei, Chia-Lin;
- Ruan, Yijun
Publication type:
Article
Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-4
By:
- Suying Cao;
- Jianyong Han;
- Jun Wu;
- Qiuyan Li;
- Shichao Liu;
- Wei Zhang;
- Yangli Pei;
- Xiaoan Ruan;
- Zhonghua Liu;
- Xumin Wang;
- Bing Lim;
- Ning Li
Publication type:
Article

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