Found: 22
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Hierarchical learning of gastric cancer molecular subtypes by integrating multi‐modal DNA‐level omics data and clinical stratification.
- Published in:
- Quantitative Biology, 2024, v. 12, n. 2, p. 182, doi. 10.1002/qub2.45
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- Article
Joint inference of clonal structure using single-cell genome and transcriptome sequencing data.
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- NAR Genomics & Bioinformatics, 2024, v. 6, n. 1, p. 1, doi. 10.1093/nargab/lqae017
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- Article
Joint Analysis of Microbial and Immune Cell Abundance in Liver Cancer Tissue Using a Gene Expression Profile Deconvolution Algorithm Combined With Foreign Read Remapping.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.853213
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- Article
Transcriptional Changes in CD16+ Monocytes May Contribute to the Pathogenesis of COVID-19.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.665773
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- Article
Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61643-6
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- Article
Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes.
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- Nucleic Acids Research, 2019, v. 47, n. 19, p. e115, doi. 10.1093/nar/gkz661
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- Article
Association network analysis identifies enzymatic components of gut microbiota that significantly differ between colorectal cancer patients and healthy controls.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.7315
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- Article
Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00826
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- Article
Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis.
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- BMC Genomics, 2019, v. 20, n. 2, p. N.PAG, doi. 10.1186/s12864-019-5469-8
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- Article
Constructing the Microbial Association Network from Large-Scale Time Series Data Using Granger Causality.
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- Genes, 2019, v. 10, n. 3, p. 216, doi. 10.3390/genes10030216
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- Article
Using Decision Tree Aggregation with Random Forest Model to Identify Gut Microbes Associated with Colorectal Cancer.
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- Genes, 2019, v. 10, n. 2, p. 112, doi. 10.3390/genes10020112
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- Article
CoreProbe: A Novel Algorithm for Estimating Relative Abundance Based on Metagenomic Reads.
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- Genes, 2018, v. 9, n. 6, p. 313, doi. 10.3390/genes9060313
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- Article
Identification of large rearrangements in cancer genomes with barcode linked reads.
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- Nucleic Acids Research, 2018, v. 46, n. 4, p. e19, doi. 10.1093/nar/gkx1193
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- Article
Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy.
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- Nucleic Acids Research, 2017, v. 45, n. 19, p. 1, doi. 10.1093/nar/gkx712
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- Article
CRISPR-Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis.
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- Nature Communications, 2017, v. 8, n. 2, p. 14291, doi. 10.1038/ncomms14291
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- Article
A genome-wide approach for detecting novel insertion-deletion variants of mid-range size.
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- Nucleic Acids Research, 2016, v. 44, n. 15, p. 1, doi. 10.1093/nar/gkw481
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- Article
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2573, doi. 10.1038/ismej.2015.76
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- Article
Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.
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- Scientific Reports, 2015, p. 16178, doi. 10.1038/srep16178
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- Article
Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0732-8
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- Article
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.
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- Bioinformatics, 2013, v. 29, n. 2, p. 230, doi. 10.1093/bioinformatics/bts668
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- Article
Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027992
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Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.
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- BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S15
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- Article