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Multiscale Persistent Functions for Biomolecular Structure Characterization.
- Published in:
- Bulletin of Mathematical Biology, 2018, v. 80, n. 1, p. 1, doi. 10.1007/s11538-017-0362-6
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- Article
Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis.
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- PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0191899
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- Article
Preface.
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- Foundations of Data Science, 2024, v. 6, n. 2, p. N.PAG, doi. 10.3934/fods.2024015
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Computing hypergraph homology.
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- Foundations of Data Science, 2024, v. 6, n. 2, p. 1, doi. 10.3934/fods.2024007
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- Article
ASPECTS OF TOPOLOGICAL APPROACHES FOR DATA SCIENCE.
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- Foundations of Data Science, 2022, v. 4, n. 2, p. 165, doi. 10.3934/fods.2022002
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- Article
Dowker complex based machine learning (DCML) models for protein-ligand binding affinity prediction.
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- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1009943
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- Article
Topological feature engineering for machine learning based halide perovskite materials design.
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- NPJ Computational Materials, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41524-022-00883-8
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- Article
Persistent Tor-algebra for protein–protein interaction analysis.
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- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad046
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- Article
Multiphysical graph neural network (MP-GNN) for COVID-19 drug design.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac231
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- Article
Persistent spectral simplicial complex-based machine learning for chromosomal structural analysis in cellular differentiation.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac168
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- Article
Persistent spectral based ensemble learning (PerSpect-EL) for protein–protein binding affinity prediction.
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- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbac024
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- Article
Molecular persistent spectral image (Mol-PSI) representation for machine learning models in drug design.
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- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab527
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- Article
Forman persistent Ricci curvature (FPRC)-based machine learning models for protein–ligand binding affinity prediction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab136
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- Article
Hypergraph-based persistent cohomology (HPC) for molecular representations in drug design.
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- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbaa411
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- Article
Weighted persistent homology for osmolyte molecular aggregation and hydrogen-bonding network analysis.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66710-6
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- Article
Weighted persistent homology for biomolecular data analysis.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-55660-3
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- Article
Determining Optimal Coarse‐Grained Representation for Biomolecules Using Internal Cluster Validation Indexes.
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- Journal of Computational Chemistry, 2020, v. 41, n. 1, p. 14, doi. 10.1002/jcc.26070
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- Article
Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis.
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- Journal of Computational Chemistry, 2016, v. 37, n. 14, p. 1283, doi. 10.1002/jcc.24320
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- Article
Multidimensional persistence in biomolecular data.
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- Journal of Computational Chemistry, 2015, v. 36, n. 20, p. 1502, doi. 10.1002/jcc.23953
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- Article
Persistent Homology for the Quantitative Prediction of Fullerene Stability.
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- Journal of Computational Chemistry, 2015, v. 36, n. 6, p. 408, doi. 10.1002/jcc.23816
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- Article
Multiscale geometric modeling of macromolecules II: Lagrangian representation.
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- Journal of Computational Chemistry, 2013, v. 34, n. 24, p. 2100, doi. 10.1002/jcc.23364
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- Article
Persistent-homology-based machine learning: a survey and a comparative study.
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- Artificial Intelligence Review, 2022, v. 55, n. 7, p. 5169, doi. 10.1007/s10462-022-10146-z
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- Article
Weighted-persistent-homology-based machine learning for RNA flexibility analysis.
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- PLoS ONE, 2020, v. 15, n. 8, p. 1, doi. 10.1371/journal.pone.0237747
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- Article
Understanding Changes in the Topology and Geometry of Financial Market Correlations during a Market Crash.
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- Entropy, 2021, v. 23, n. 9, p. 1211, doi. 10.3390/e23091211
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- Article
Persistent topology for cryo-EM data analysis.
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- International Journal for Numerical Methods in Biomedical Engineering, 2015, v. 31, n. 8, p. n/a, doi. 10.1002/cnm.2719
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Persistent homology analysis of protein structure, flexibility, and folding.
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- International Journal for Numerical Methods in Biomedical Engineering, 2014, v. 30, n. 8, p. 814, doi. 10.1002/cnm.2655
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Geometric modeling of subcellular structures, organelles, and multiprotein complexes.
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- International Journal for Numerical Methods in Biomedical Engineering, 2012, v. 28, n. 12, p. 1198, doi. 10.1002/cnm.2532
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Persistent Dirac for molecular representation.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-37853-z
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- Article
Weighted Fundamental Group.
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- Bulletin of the Malaysian Mathematical Sciences Society, 2020, v. 43, n. 6, p. 4065, doi. 10.1007/s40840-020-00904-z
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Hodge theory-based biomolecular data analysis.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-12877-z
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- Article
Laplacian Spectra of Persistent Structures in Taiwan, Singapore, and US Stock Markets.
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- Entropy, 2023, v. 25, n. 6, p. 846, doi. 10.3390/e25060846
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- Article