Works matching AU Xia, Jianguo

Results: 101

Metabolomics investigation of dietary effects on flesh quality in grass carp (Ctenopharyngodon idellus).

Published in:

GigaScience, 2018, v. 7, n. 10, p. N.PAG, doi. 10.1093/gigascience/giy111

By:

Zhao, Honghao;
Chong, Jasmine;
Tang, Rong;
Li, Li;
Xia, Jianguo;
Li, Dapeng

Publication type:

Article

Intercellular transfer of messenger RNAs in multiorgan tumorigenesis by tumor cell-derived exosomes.

Published in:

Molecular Medicine Reports, 2015, v. 11, n. 6, p. 4657, doi. 10.3892/mmr.2015.3312

By:

HONG JIANG;
ZHENG LI;
XIAOHUA LI;
JIANGUO XIA

Publication type:

Article

Construction of a Territorial Space Classification System Based on Spatiotemporal Heterogeneity of Land Use and Its Superior Territorial Space Functions and Their Dynamic Coupling: Case Study on Qionglai City of Sichuan Province, China.

Published in:

International Journal of Environmental Research & Public Health, 2021, v. 18, n. 17, p. 9052, doi. 10.3390/ijerph18179052

By:

Ou, Dinghua;
Zhang, Qi;
Wu, Yijie;
Qin, Jing;
Xia, Jianguo;
Deng, Ouping;
Gao, Xuesong;
Bian, Jinhu;
Gong, Shangqi

Publication type:

Article

FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data.

Published in:

Bioinformatics, 2021, v. 37, n. 7, p. 1035, doi. 10.1093/bioinformatics/btaa700

By:

Ewald, Jessica;
Soufan, Othman;
Xia, Jianguo;
Basu, Niladri

Publication type:

Article

INMEX—a web-based tool for integrative meta-analysis of expression data.

Published in:

Nucleic Acids Research, 2013, v. 41, p. W63, doi. 10.1093/nar/gkt338

By:

Xia, Jianguo;
Fjell, Christopher D.;
Mayer, Matthew L.;
Pena, Olga M.;
Wishart, David S.;
Hancock, Robert E. W.

Publication type:

Article

HMDB 3.0--The Human Metabolome Database in 2013.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D801, doi. 10.1093/nar/gks1065

By:

Wishart, David S.;
Jewison, Timothy;
An Chi Guo;
Wilson, Michael;
Craig Knox;
Yifeng Liu;
Djoumbou, Yannick;
Mandal, Rupasri;
Aziat, Farid;
Edison Dong;
Bouatra, Souhaila;
Sinelnikov, Igor;
Arndt, David;
Jianguo Xia;
Philip Liu;
Yallou, Faizath;
Bjorndahl, Trent;
Perez-Pineiro, Rolando;
Eisner, Roman;
Allen, Felicity

Publication type:

Article

METAGENassist: a comprehensive web server for comparative metagenomics.

Published in:

Nucleic Acids Research, 2012, v. 40, p. W88, doi. 10.1093/nar/gks497

By:

Arndt, David;
Jianguo Xia;
Yifeng Liu;
You Zhou;
An Chi Guo;
Cruz, Joseph A.;
Sinelnikov, Igor;
Budwill, Karen;
Nesbø, Camilla L.;
Wishart, David S.

Publication type:

Article

MetaboAnalyst 2.0—a comprehensive server for metabolomic data analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, p. W127, doi. 10.1093/nar/gks374

By:

Jianguo Xia;
Mandal, Rupasri;
Sinelnikov, Igor V.;
Broadhurst, David;
Wishart, David S.

Publication type:

Article

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W71, doi. 10.1093/nar/gkq329

By:

Xia, Jianguo;
Wishart, David S.

Publication type:

Article

SMPDB: The Small Molecule Pathway Database.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D480, doi. 10.1093/nar/gkp1002

By:

Frolkis, Alex;
Knox, Craig;
Lim, Emilia;
Jewison, Timothy;
Law, Vivian;
Hau, David D.;
Liu, Phillip;
Gautam, Bijaya;
Son Ly;
An Chi Guo;
Jianguo Xia;
Yongjie Liang;
Shrivastava, Savita;
Wishart, David S.

Publication type:

Article

MetaboAnalyst: a web server for metabolomic data analysis and interpretation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W652, doi. 10.1093/nar/gkp356

By:

Xia, Jianguo;
Psychogios, Nick;
Young, Nelson;
Wishart, David S.

Publication type:

Article

HMDB: a knowledgebase for the human metabolome.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D603, doi. 10.1093/nar/gkn810

By:

Wishart, David S.;
Knox, Craig;
Guo, An Chi;
Eisner, Roman;
Young, Nelson;
Gautam, Bijaya;
Hau, David D.;
Psychogios, Nick;
Dong, Edison;
Bouatra, Souhaila;
Mandal, Rupasri;
Sinelnikov, Igor;
Xia, Jianguo;
Jia, Leslie;
Cruz, Joseph A.;
Lim, Emilia;
Sobsey, Constance A.;
Shrivastava, Savita;
Huang, Paul;
Liu, Philip

Publication type:

Article

Impact of Cannabidiol and Exercise on Clinical Outcomes and Gut Microbiota for Chemotherapy-Induced Peripheral Neuropathy in Cancer Survivors: A Case Report.

Published in:

Pharmaceuticals (14248247), 2024, v. 17, n. 7, p. 834, doi. 10.3390/ph17070834

By:

Vigano, MariaLuisa;
Kubal, Sarah;
Lu, Yao;
Habib, Sarah;
Samarani, Suzanne;
Cama, Georgina;
Viau, Charles;
Farzin, Houman;
Koudieh, Nebras;
Xia, Jianguo;
Ahmad, Ali;
Vigano, Antonio;
Costiniuk, Cecilia T.

Publication type:

Article

Spectral CT - a new supplementary method for preoperative assessment of pathological grades of esophageal squamous cell carcinoma.

Published in:

BMC Medical Imaging, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12880-023-01068-5

By:

Wang, Yi;
Tian, Weizhong;
Tian, Shuangfeng;
He, Liang;
Xia, Jianguo;
Zhang, Ji

Publication type:

Article

Metabolomics and first-trimester prediction of early-onset preeclampsia.

Published in:

Journal of Maternal-Fetal & Neonatal Medicine, 2012, v. 25, n. 10, p. 1840, doi. 10.3109/14767058.2012.680254

By:

Bahado-Singh, Ray O.;
Akolekar, Ranjit;
Mandal, Rupasri;
Dong, Edison;
Xia, Jianguo;
Kruger, Michael;
Wishart, David S.;
Nicolaides, Kypros

Publication type:

Article

The Native Microbiome Member Chryseobacterium sp. CHNTR56 MYb120 Induces Trehalose Production via a Shift in Central Carbon Metabolism during Early Life in C. elegans.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 8, p. 953, doi. 10.3390/metabo13080953

By:

Shiri, Tanisha Jean;
Viau, Charles;
Gu, Xue;
Xu, Lei;
Lu, Yao;
Xia, Jianguo

Publication type:

Article

mGWAS-Explorer 2.0: Causal Analysis and Interpretation of Metabolite–Phenotype Associations.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 7, p. 826, doi. 10.3390/metabo13070826

By:

Chang, Le;
Zhou, Guangyan;
Xia, Jianguo

Publication type:

Article

mGWAS-Explorer: Linking SNPs, Genes, Metabolites, and Diseases for Functional Insights.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 6, p. 526, doi. 10.3390/metabo12060526

By:

Chang, Le;
Zhou, Guangyan;
Ou, Huiting;
Xia, Jianguo

Publication type:

Article

Native Microbiome Members of C. elegans Act Synergistically in Biosynthesis of Pyridoxal 5′-Phosphate.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/metabo12020172

By:

Haçariz, Orçun;
Viau, Charles;
Gu, Xue;
Xia, Jianguo

Publication type:

Article

TrpNet: Understanding Tryptophan Metabolism across Gut Microbiome.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 1, p. 10, doi. 10.3390/metabo12010010

By:

Lu, Yao;
Chong, Jasmine;
Shen, Shiqian;
Chammas, Joey-Bahige;
Chalifour, Lorraine;
Xia, Jianguo

Publication type:

Article

Targeted Metabolomics to Assess Exposure to Environmental Chemicals of Concern in Japanese Quail at Two Life Stages.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 12, p. 850, doi. 10.3390/metabo11120850

By:

Legrand, Elena;
Basu, Niladri;
Hecker, Markus;
Crump, Doug;
Xia, Jianguo;
Chandramouli, Bharat;
Butler, Heather;
Head, Jessica A.

Publication type:

Article

Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 1, p. 44, doi. 10.3390/metabo11010044

By:

Pang, Zhiqiang;
Zhou, Guangyan;
Chong, Jasmine;
Xia, Jianguo

Publication type:

Article

MetaboAnalystR 3.0: Toward an Optimized Workflow for Global Metabolomics.

Published in:

Metabolites (2218-1989), 2020, v. 10, n. 5, p. 186, doi. 10.3390/metabo10050186

By:

Pang, Zhiqiang;
Chong, Jasmine;
Li, Shuzhao;
Xia, Jianguo

Publication type:

Article

MetaboAnalystR 2.0: From Raw Spectra to Biological Insights.

Published in:

Metabolites (2218-1989), 2019, v. 9, n. 3, p. 57, doi. 10.3390/metabo9030057

By:

Chong, Jasmine;
Yamamoto, Mai;
Xia, Jianguo

Publication type:

Article

Computational Approaches for Integrative Analysis of the Metabolome and Microbiome.

Published in:

Metabolites (2218-1989), 2017, v. 7, n. 4, p. 62, doi. 10.3390/metabo7040062

By:

Chong, Jasmine;
Jianguo Xia

Publication type:

Article

Development of a Composite Model for Simulating Landscape Pattern Optimization Allocation: A Case Study in the Longquanyi District of Chengdu City, Sichuan Province, China.

Published in:

Sustainability (2071-1050), 2019, v. 11, n. 9, p. 2678, doi. 10.3390/su11092678

By:

Ou, Dinghua;
Yao, Xingzhu;
Xia, Jianguo;
Gao, Xuesong;
Wang, Changquan;
Chen, Wanlu;
Li, Qiquan;
Hu, Zongda;
Yang, Juan

Publication type:

Article

Multi-Scenario Simulation of Land-Use/Land-Cover Changes and Carbon Storage Prediction Coupled with the SD-PLUS-InVEST Model: A Case Study of the Tuojiang River Basin, China.

Published in:

Land (2012), 2024, v. 13, n. 9, p. 1518, doi. 10.3390/land13091518

By:

Wang, Qi;
Zhang, Wenying;
Xia, Jianguo;
Ou, Dinghua;
Tian, Zhaonan;
Gao, Xuesong

Publication type:

Article

Optimal Allocation of Territorial Space in the Minjiang River Basin Based on a Double Optimization Simulation Model.

Published in:

Land (2012), 2023, v. 12, n. 11, p. 1989, doi. 10.3390/land12111989

By:

Wang, Ge;
Zhou, Ziqi;
Xia, Jianguo;
Ou, Dinghua;
Fei, Jianbo;
Gong, Shunya;
Xiang, Yuxiao

Publication type:

Article

Comprehensive investigation of pathway enrichment methods for functional interpretation of LC–MS global metabolomics data.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac553

By:

Lu, Yao;
Pang, Zhiqiang;
Xia, Jianguo

Publication type:

Article

A 3D Fluorescence Classification and Component Prediction Method Based on VGG Convolutional Neural Network and PARAFAC Analysis Method.

Published in:

Applied Sciences (2076-3417), 2022, v. 12, n. 10, p. 4886, doi. 10.3390/app12104886

By:

Ruan, Kun;
Zhao, Shun;
Jiang, Xueqin;
Li, Yixuan;
Fei, Jianbo;
Ou, Dinghua;
Tang, Qiang;
Lu, Zhiwei;
Liu, Tao;
Xia, Jianguo

Publication type:

Article

Combined Transrectal Ultrasound Five‐Grade Scoring System and Multiparametric MRI PI‐RADS Score for Risk Prediction Modeling of Prostate Cancer and Clinically Significant Prostate Cancer in the PSA Gray Zone.

Published in:

Andrologia, 2024, v. 2024, p. 1, doi. 10.1155/2024/6699676

By:

Dong, Qi;
Tong, Zhen;
Xia, Jianguo;
Yang, Wenqi;
Liu, Guiqin;
Wu, Guangyu;
Xie, Shaowei;
Li, Hongli;
Samir, Haney

Publication type:

Article

ExpressAnalyst: A unified platform for RNA-sequencing analysis in non-model species.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38785-y

By:

Liu, Peng;
Ewald, Jessica;
Pang, Zhiqiang;
Legrand, Elena;
Jeon, Yeon Seon;
Sangiovanni, Jonathan;
Hacariz, Orcun;
Zhou, Guangyan;
Head, Jessica A.;
Basu, Niladri;
Xia, Jianguo

Publication type:

Article

Identifying glycan consumers in human gut microbiota samples using metabolic labeling coupled with fluorescence-activated cell sorting.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36365-8

By:

Dridi, Lharbi;
Altamura, Fernando;
Gonzalez, Emmanuel;
Lui, Olivia;
Kubinski, Ryszard;
Pidgeon, Reilly;
Montagut, Adrian;
Chong, Jasmine;
Xia, Jianguo;
Maurice, Corinne F.;
Castagner, Bastien

Publication type:

Article

Web-based multi-omics integration using the Analyst software suite.

Published in:

Nature Protocols, 2024, v. 19, n. 5, p. 1467, doi. 10.1038/s41596-023-00950-4

By:

Ewald, Jessica D.;
Zhou, Guangyan;
Lu, Yao;
Kolic, Jelena;
Ellis, Cara;
Johnson, James D.;
Macdonald, Patrick E.;
Xia, Jianguo

Publication type:

Article

Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data.

Published in:

Nature Protocols, 2022, v. 17, n. 8, p. 1735, doi. 10.1038/s41596-022-00710-w

By:

Pang, Zhiqiang;
Zhou, Guangyan;
Ewald, Jessica;
Chang, Le;
Hacariz, Orcun;
Basu, Niladri;
Xia, Jianguo

Publication type:

Article

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data.

Published in:

Nature Protocols, 2020, v. 15, n. 3, p. 799, doi. 10.1038/s41596-019-0264-1

By:

Chong, Jasmine;
Liu, Peng;
Zhou, Guangyan;
Xia, Jianguo

Publication type:

Article

Hepatic Transcriptomic Responses to Ethinylestradiol in Embryonic Japanese Quail and Double‐Crested Cormorant.

Published in:

Environmental Toxicology & Chemistry, 2024, v. 43, n. 4, p. 772, doi. 10.1002/etc.5811

By:

Jeon, Yeon‐Seon;
Sangiovanni, Jonathan;
Boulanger, Emily;
Crump, Doug;
Liu, Peng;
Ewald, Jessica;
Basu, Niladri;
Xia, Jianguo;
Hecker, Markus;
Head, Jessica

Publication type:

Article

Development and Initial Testing of EcoToxChip, a Novel Toxicogenomics Tool for Environmental Management and Chemical Risk Assessment.

Published in:

Environmental Toxicology & Chemistry, 2023, v. 42, n. 8, p. 1763, doi. 10.1002/etc.5676

By:

Crump, Doug;
Hickey, Gordon;
Boulanger, Emily;
Masse, Anita;
Head, Jessica A.;
Hogan, Natacha;
Maguire, Steve;
Xia, Jianguo;
Hecker, Markus;
Basu, Niladri

Publication type:

Article

Hepatic Transcriptomic Responses to Ethinylestradiol in Two Life Stages of Japanese Quail.

Published in:

Environmental Toxicology & Chemistry, 2022, v. 41, n. 11, p. 2769, doi. 10.1002/etc.5464

By:

Jeon, Yeon‐Seon;
Crump, Doug;
Boulanger, Emily;
Soufan, Othman;
Park, Bradley;
Basu, Niladri;
Hecker, Markus;
Xia, Jianguo;
Head, Jessica A.

Publication type:

Article

EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web‐Based Transcriptomics Analytics Platform for Diverse Users.

Published in:

Environmental Toxicology & Chemistry, 2022, v. 41, n. 1, p. 21, doi. 10.1002/etc.5251

By:

Soufan, Othman;
Ewald, Jessica;
Zhou, Guangyan;
Hacariz, Orcun;
Boulanger, Emily;
Alcaraz, Alper James;
Hickey, Gordon;
Maguire, Steve;
Pain, Guillaume;
Hogan, Natacha;
Hecker, Markus;
Crump, Doug;
Head, Jessica;
Basu, Niladri;
Xia, Jianguo

Publication type:

Article

Using Transcriptomics and Metabolomics to Understand Species Differences in Sensitivity to Chlorpyrifos in Japanese Quail and Double‐Crested Cormorant Embryos.

Published in:

Environmental Toxicology & Chemistry, 2021, v. 40, n. 11, p. 3019, doi. 10.1002/etc.5174

By:

Desforges, Jean‐Pierre;
Legrand, Elena;
Boulager, Emily;
Liu, Peng;
Xia, Jianguo;
Butler, Heather;
Chandramouli, Bharat;
Ewald, Jessica;
Basu, Niladri;
Hecker, Markus;
Head, Jessica;
Crump, Doug

Publication type:

Article

EcoToxChip: A next‐generation toxicogenomics tool for chemical prioritization and environmental management.

Published in:

Environmental Toxicology & Chemistry, 2019, v. 38, n. 2, p. 279, doi. 10.1002/etc.4309

By:

Basu, Niladri;
Crump, Doug;
Head, Jessica;
Hickey, Gordon;
Hogan, Natacha;
Maguire, Steve;
Xia, Jianguo;
Hecker, Markus

Publication type:

Article

Translational biomarker discovery in clinical metabolomics: an introductory tutorial.

Published in:

Metabolomics, 2013, v. 9, n. 2, p. 280, doi. 10.1007/s11306-012-0482-9

By:

Xia, Jianguo;
Broadhurst, David;
Wilson, Michael;
Wishart, David

Publication type:

Article

Learning to predict cancer-associated skeletal muscle wasting from H-NMR profiles of urinary metabolites.

Published in:

Metabolomics, 2011, v. 7, n. 1, p. 25, doi. 10.1007/s11306-010-0232-9

By:

Eisner, Roman;
Stretch, Cynthia;
Eastman, Thomas;
Jianguo Xia;
Hau, David;
Damaraju, Sambasivarao;
Greiner, Russell;
Wishart, David;
Baracos, Vickie

Publication type:

Article

Metabolomics reveals unhealthy alterations in rumen metabolism with increased proportion of cereal grain in the diet of dairy cows.

Published in:

Metabolomics, 2010, v. 6, n. 4, p. 583, doi. 10.1007/s11306-010-0227-6

By:

Ametaj, Burim N.;
Zebeli, Qendrim;
Saleem, Fozia;
Psychogios, Nikolaos;
Lewis, Michael J.;
Dunn, Suzanna M.;
Jianguo Xia;
Wishart, David S.

Publication type:

Article

Proton Magnetic Resonance Spectroscopy (<sup>1</sup>H-MRS) Study of Early Traumatic Brain Injury in Rabbits.

Published in:

Medical Science Monitor, 2017, v. 23, p. 2365, doi. 10.12659/MSM.904788

By:

Yong Xiao;
Yigang Fu;
Yi Zhou;
Jianguo Xia;
Lina Wang;
Chunhong Hu

Publication type:

Article

Effect of atmospheric carbon dioxide levels and nitrate fertilization on glucosinolate biosynthesis in mechanically damaged Arabidopsis plants.

Published in:

BMC Plant Biology, 2016, v. 16, p. 1, doi. 10.1186/s12870-016-0752-1

By:

Paudel, Jamuna Risal;
Amirizian, Alexandre;
Krosse, Sebastian;
Giddings, Jessica;
Arief Ismail, Shoieb Akaram;
Jianguo Xia;
Gloer, James B.;
van Dam, Nicole M.;
Bede, Jacqueline C.

Publication type:

Article

MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data.

Published in:

Bioinformatics, 2018, v. 34, n. 24, p. 4313, doi. 10.1093/bioinformatics/bty528

By:

Chong, Jasmine;
Xia, Jianguo

Publication type:

Article

INVEX—a web-based tool for integrative visualization of expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3232, doi. 10.1093/bioinformatics/btt562

By:

Xia, Jianguo;
Lyle, Ngan H.;
Mayer, Matthew L.;
Pena, Olga M.;
Hancock, Robert E. W.

Publication type:

Article

MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2455, doi. 10.1093/bioinformatics/btr392

By:

Xia, Jianguo;
Sinelnikov, Igor V.;
Wishart, David S.

Publication type:

Article