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MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W398, doi. 10.1093/nar/gkae253
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- Article
Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline.
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- PLoS Computational Biology, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pcbi.1011912
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- Article
Brain white matter microstructural alterations in patients with systemic lupus erythematosus: an automated fiber quantification study.
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- Brain Imaging & Behavior, 2024, v. 18, n. 3, p. 622, doi. 10.1007/s11682-024-00861-2
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- Article
Web-based multi-omics integration using the Analyst software suite.
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- Nature Protocols, 2024, v. 19, n. 5, p. 1467, doi. 10.1038/s41596-023-00950-4
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Exploring deep learning radiomics for classifying osteoporotic vertebral fractures in X-ray images.
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- Frontiers in Endocrinology, 2024, p. 1, doi. 10.3389/fendo.2024.1370838
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- Article
Hepatic Transcriptomic Responses to Ethinylestradiol in Embryonic Japanese Quail and Double‐Crested Cormorant.
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- Environmental Toxicology & Chemistry, 2024, v. 43, n. 4, p. 772, doi. 10.1002/etc.5811
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- Article
Using ExpressAnalyst for Comprehensive Gene Expression Analysis in Model and Non‐Model Organisms.
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- Current Protocols, 2023, v. 3, n. 11, p. 1, doi. 10.1002/cpz1.922
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- Article
Optimal Allocation of Territorial Space in the Minjiang River Basin Based on a Double Optimization Simulation Model.
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- Land (2012), 2023, v. 12, n. 11, p. 1989, doi. 10.3390/land12111989
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- Article
A phenome-wide association study (PheWAS) to identify the health impacts of 4-cresol sulfate in the Nagahama Study.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-40697-2
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- Article
Spectral CT - a new supplementary method for preoperative assessment of pathological grades of esophageal squamous cell carcinoma.
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- BMC Medical Imaging, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12880-023-01068-5
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Development and Initial Testing of EcoToxChip, a Novel Toxicogenomics Tool for Environmental Management and Chemical Risk Assessment.
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- Environmental Toxicology & Chemistry, 2023, v. 42, n. 8, p. 1763, doi. 10.1002/etc.5676
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- Article
The Native Microbiome Member Chryseobacterium sp. CHNTR56 MYb120 Induces Trehalose Production via a Shift in Central Carbon Metabolism during Early Life in C. elegans.
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- Metabolites (2218-1989), 2023, v. 13, n. 8, p. 953, doi. 10.3390/metabo13080953
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- Article
MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W310, doi. 10.1093/nar/gkad407
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- Article
mGWAS-Explorer 2.0: Causal Analysis and Interpretation of Metabolite–Phenotype Associations.
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- Metabolites (2218-1989), 2023, v. 13, n. 7, p. 826, doi. 10.3390/metabo13070826
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- Article
ExpressAnalyst: A unified platform for RNA-sequencing analysis in non-model species.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38785-y
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- Article
Genomic and phenotypic profiling of Staphylococcus aureus isolates from bovine mastitis for antibiotic resistance and intestinal infectivity.
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- BMC Microbiology, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12866-023-02785-1
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- Article
Identifying glycan consumers in human gut microbiota samples using metabolic labeling coupled with fluorescence-activated cell sorting.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36365-8
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- Article
Comprehensive investigation of pathway enrichment methods for functional interpretation of LC–MS global metabolomics data.
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- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac553
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- Article
Immunogenic change after percutaneous microwave ablation in pulmonary malignancies: Variation in immune cell subsets and cytokines in peripheral blood.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.1069192
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- Article
Hepatic Transcriptomic Responses to Ethinylestradiol in Two Life Stages of Japanese Quail.
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- Environmental Toxicology & Chemistry, 2022, v. 41, n. 11, p. 2769, doi. 10.1002/etc.5464
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- Article
Alterations in degree centrality and cognitive function in breast cancer patients after chemotherapy.
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- Brain Imaging & Behavior, 2022, v. 16, n. 5, p. 2248, doi. 10.1007/s11682-022-00695-w
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- Article
Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data.
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- Nature Protocols, 2022, v. 17, n. 8, p. 1735, doi. 10.1038/s41596-022-00710-w
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- Article
OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics.
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- Nucleic Acids Research, 2022, v. 50, n. W1, p. W527, doi. 10.1093/nar/gkac376
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- Article
mGWAS-Explorer: Linking SNPs, Genes, Metabolites, and Diseases for Functional Insights.
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- Metabolites (2218-1989), 2022, v. 12, n. 6, p. 526, doi. 10.3390/metabo12060526
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- Article
A 3D Fluorescence Classification and Component Prediction Method Based on VGG Convolutional Neural Network and PARAFAC Analysis Method.
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- Applied Sciences (2076-3417), 2022, v. 12, n. 10, p. 4886, doi. 10.3390/app12104886
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- Article
Native Microbiome Members of C. elegans Act Synergistically in Biosynthesis of Pyridoxal 5′-Phosphate.
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- Metabolites (2218-1989), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/metabo12020172
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- Article
EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web‐Based Transcriptomics Analytics Platform for Diverse Users.
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- Environmental Toxicology & Chemistry, 2022, v. 41, n. 1, p. 21, doi. 10.1002/etc.5251
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- Article
TrpNet: Understanding Tryptophan Metabolism across Gut Microbiome.
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- Metabolites (2218-1989), 2022, v. 12, n. 1, p. 10, doi. 10.3390/metabo12010010
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- Article
Targeted Metabolomics to Assess Exposure to Environmental Chemicals of Concern in Japanese Quail at Two Life Stages.
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- Metabolites (2218-1989), 2021, v. 11, n. 12, p. 850, doi. 10.3390/metabo11120850
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- Article
Using Transcriptomics and Metabolomics to Understand Species Differences in Sensitivity to Chlorpyrifos in Japanese Quail and Double‐Crested Cormorant Embryos.
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- Environmental Toxicology & Chemistry, 2021, v. 40, n. 11, p. 3019, doi. 10.1002/etc.5174
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- Article
Construction of a Territorial Space Classification System Based on Spatiotemporal Heterogeneity of Land Use and Its Superior Territorial Space Functions and Their Dynamic Coupling: Case Study on Qionglai City of Sichuan Province, China.
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- International Journal of Environmental Research & Public Health, 2021, v. 18, n. 17, p. 9052, doi. 10.3390/ijerph18179052
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- Article
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W388, doi. 10.1093/nar/gkab382
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- Article
OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W476, doi. 10.1093/nar/gkab394
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- Article
The Magnetic Nanomaterial Biofunctions in Cancer Diagnosis and Therapy.
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- Journal of Nanomaterials, 2021, p. 1, doi. 10.1155/2021/9968166
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The symbiotic relationship between Caenorhabditis elegans and members of its microbiome contributes to worm fitness and lifespan extension.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07695-y
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- Article
FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data.
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- Bioinformatics, 2021, v. 37, n. 7, p. 1035, doi. 10.1093/bioinformatics/btaa700
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- Article
Comprehensive Meta-Analysis of COVID-19 Global Metabolomics Datasets.
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- Metabolites (2218-1989), 2021, v. 11, n. 1, p. 44, doi. 10.3390/metabo11010044
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- Article
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology.
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- Nucleic Acids Research, 2020, v. 48, n. W1, p. W244, doi. 10.1093/nar/gkaa467
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- Publication type:
- Article
Data Collection and Analysis of Visible Light Micro-Ecological Remote Sensing Based on Task Debugging and Optimization.
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- Acta Microscopica, 2020, v. 29, n. 5, p. 2494
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- Article
MetaboAnalystR 3.0: Toward an Optimized Workflow for Global Metabolomics.
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- Metabolites (2218-1989), 2020, v. 10, n. 5, p. 186, doi. 10.3390/metabo10050186
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- Publication type:
- Article
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data.
- Published in:
- Nature Protocols, 2020, v. 15, n. 3, p. 799, doi. 10.1038/s41596-019-0264-1
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- Publication type:
- Article
Rapid localization of ureteral calculi in patients with renal colic by "ultrasonic ureteral crossing sign".
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58805-x
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- Article
Comprehensive phenotyping and transcriptome profiling to study nanotoxicity in C. elegans.
- Published in:
- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8684
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T1000: a reduced gene set prioritized for toxicogenomic studies.
- Published in:
- PeerJ, 2019, p. 1, doi. 10.7717/peerj.7975
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- Publication type:
- Article
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W234, doi. 10.1093/nar/gkz240
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- Publication type:
- Article
Development of a Composite Model for Simulating Landscape Pattern Optimization Allocation: A Case Study in the Longquanyi District of Chengdu City, Sichuan Province, China.
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- Sustainability (2071-1050), 2019, v. 11, n. 9, p. 2678, doi. 10.3390/su11092678
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- Article
MetaboAnalystR 2.0: From Raw Spectra to Biological Insights.
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- Metabolites (2218-1989), 2019, v. 9, n. 3, p. 57, doi. 10.3390/metabo9030057
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- Article
EcoToxChip: A next‐generation toxicogenomics tool for chemical prioritization and environmental management.
- Published in:
- Environmental Toxicology & Chemistry, 2019, v. 38, n. 2, p. 279, doi. 10.1002/etc.4309
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- Publication type:
- Article
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 24, p. 4313, doi. 10.1093/bioinformatics/bty528
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- Article
Metabolomics investigation of dietary effects on flesh quality in grass carp (Ctenopharyngodon idellus).
- Published in:
- GigaScience, 2018, v. 7, n. 10, p. N.PAG, doi. 10.1093/gigascience/giy111
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- Article