Works matching AU Xia, Fangfang

Results: 57

Target Bioconjugation of Protein Through Chemical, Molecular Dynamics, and Artificial Intelligence Approaches.

Published in:

Metabolites (2218-1989), 2024, v. 14, n. 12, p. 668, doi. 10.3390/metabo14120668

By:

Abbas, Sk Jahir;
Yesmin, Sabina;
Vittala, Sandeepa K.;
Sepay, Nayim;
Xia, Fangfang;
Ali, Sk Imran;
Chang, Wei-Chun;
Hung, Yao-Ching;
Ma, Wen-Lung

Publication type:

Article

Pancytopenia Due to Possible Drug–Drug Interactions Between Low-Dose Methotrexate and Proton Pump Inhibitors.

Published in:

Drug, Healthcare & Patient Safety, 2022, v. 14, p. 75, doi. 10.2147/DHPS.S350194

By:

Tao, Dan;
Wang, Hui;
Xia, Fangfang;
Ma, Wenlu

Publication type:

Article

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models.

Published in:

Genes, 2020, v. 11, n. 9, p. 1070, doi. 10.3390/genes11091070

By:

Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

Theoretical investigation of the crystallographic structure, anisotropic elastic response, and electronic properties of the major borides in Ni-based superalloys.

Published in:

Philosophical Magazine, 2020, v. 100, n. 8, p. 998, doi. 10.1080/14786435.2020.1714089

By:

Xia, Fangfang;
Sangid, Michael D.;
Xiao, Yao;
Gong, Xiaoguo;
Gang, Tieqiang;
Chen, Lijie;
Xu, Wei-Wei

Publication type:

Article

Publisher Correction: Converting tabular data into images for deep learning with convolutional neural networks.

Published in:

2021

By:

Zhu, Yitan;
Brettin, Thomas;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Evrard, Yvonne A.;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Correction Notice

SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0048053

By:

Aziz, Ramy K.;
Devoid, Scott;
Disz, Terrence;
Edwards, Robert A.;
Henry, Christopher S.;
Olsen, Gary J.;
Olson, Robert;
Overbeek, Ross;
Parrello, Bruce;
Pusch, Gordon D.;
Stevens, Rick L.;
Vonstein, Veronika;
Xia, Fangfang

Publication type:

Article

In silico screening of drug targets against thousands of select compounds.

Published in:

FASEB Journal, 2007, v. 21, n. 5, p. A626, doi. 10.1096/fasebj.21.5.a626

By:

McNeil, Leslie Klis;
Cohoon, Matthew;
Hwang, Kaitlyn;
Kubal, Michael;
Margaryan, Gohar Rem;
Parrello, Bruce;
Fangfang Xia;
Zinner, Jenifer;
Stevens, Rick

Publication type:

Article

Sensory assessment of intramuscular quadratus lumborum block at the L2 level in open inguinal hernia repair patients.

Published in:

BMC Anesthesiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12871-024-02763-8

By:

Zhang, Sainan;
Sun, Jiaying;
Liu, Chufan;
Gong, Xinlian;
Chen, Ruoxing;
Jin, Zhousheng;
Xia, Fangfang;
Liu, Le;
Wang, Quanguang;
Chen, Hongfei

Publication type:

Article

Microwave-Induced In Situ Synthesis of Zn2GeO4/N-Doped Graphene Nanocomposites and Their Lithium-Storage Properties.

Published in:

Chemistry - A European Journal, 2013, v. 19, n. 19, p. 6027, doi. 10.1002/chem.201204588

By:

Zou, Feng;
Hu, Xianluo;
Sun, Yongming;
Luo, Wei;
Xia, Fangfang;
Qie, Long;
Jiang, Yan;
Huang, Yunhui

Publication type:

Article

Reconstruction of Conformal Nanoscale MnO on Graphene as a High-Capacity and Long-Life Anode Material for Lithium Ion Batteries.

Published in:

Advanced Functional Materials, 2013, v. 23, n. 19, p. 2436, doi. 10.1002/adfm.201202623

By:

Sun, Yongming;
Hu, Xianluo;
Luo, Wei;
Xia, Fangfang;
Huang, Yunhui

Publication type:

Article

Heavy metals and PCDD/Fs in solid waste incinerator fly ash in Zhejiang province, China: chemical and bio-analytical characterization.

Published in:

Environmental Monitoring & Assessment, 2012, v. 184, n. 6, p. 3711, doi. 10.1007/s10661-011-2218-0

By:

Yao, Jun;
Li, WenBing;
Xia, FangFang;
Zheng, YuanGe;
Fang, ChengRan;
Shen, DongSheng

Publication type:

Article

Identifying genomic islands with deep neural networks.

Published in:

BMC Genomics, 2021, v. 22, p. 1, doi. 10.1186/s12864-021-07575-5

By:

Assaf, Rida;
Fangfang Xia;
Stevens, Rick

Publication type:

Article

Community Extraction of Complex Networks in the Textile-related Trade.

Published in:

Journal of the Japan Research Association for Textile End-Uses / Sen'i Seihin Shōhi Kagaku, 2013, v. 54, n. 1, p. 76

By:

MATSUMURA, Yoshiyuki;
Fangfang XIA;
TAKATERA, Masayuki;
OHTANI, Tsuyoshi;
YASUDA, Toshiyuki;
OHKURA, Kazuhiro

Publication type:

Article

Elimination of sulphur odours at landfills by bioconversion and the corona discharge plasma technique.

Published in:

Environmental Technology, 2015, v. 36, n. 23, p. 2959, doi. 10.1080/09593330.2014.957244

By:

Xia, Fangfang;
Liu, Xin;
Kang, Ying;
He, Ruo;
Wu, Zucheng

Publication type:

Article

Antimicrobial Resistance Prediction in PATRIC and RAST.

Published in:

Scientific Reports, 2016, p. 27930, doi. 10.1038/srep27930

By:

Davis, James J.;
Boisvert, Sébastien;
Brettin, Thomas;
Kenyon, Ronald W.;
Mao, Chunhong;
Olson, Robert;
Overbeek, Ross;
Santerre, John;
Shukla, Maulik;
Wattam, Alice R.;
Will, Rebecca;
Xia, Fangfang;
Stevens, Rick

Publication type:

Article

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Published in:

Scientific Reports, 2015, p. 8365, doi. 10.1038/srep08365

By:

Brettin, Thomas;
Davis, James J.;
Disz, Terry;
Edwards, Robert A.;
Gerdes, Svetlana;
Olsen, Gary J.;
Olson, Robert;
Overbeek, Ross;
Parrello, Bruce;
Pusch, Gordon D.;
Shukla, Maulik;
Thomason, James A.;
Stevens, Rick;
Vonstein, Veronika;
Wattam, Alice R.;
Xia, Fangfang

Publication type:

Article

Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf134

By:

Narykov, Oleksandr;
Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A;
Partin, Alexander;
Xia, Fangfang;
Shukla, Maulik;
Vasanthakumari, Priyanka;
Doroshow, James H;
Stevens, Rick L

Publication type:

Article

cross-study analysis of drug response prediction in cancer cell lines.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab356

By:

Xia, Fangfang;
Allen, Jonathan;
Balaprakash, Prasanna;
Brettin, Thomas;
Garcia-Cardona, Cristina;
Clyde, Austin;
Cohn, Judith;
Doroshow, James;
Duan, Xiaotian;
Dubinkina, Veronika;
Evrard, Yvonne;
Fan, Ya Ju;
Gans, Jason;
He, Stewart;
Lu, Pinyi;
Maslov, Sergei;
Partin, Alexander;
Shukla, Maulik;
Stahlberg, Eric;
Wozniak, Justin M

Publication type:

Article

Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models.

Published in:

Briefings in Bioinformatics, 2014, v. 15, n. 4, p. 592, doi. 10.1093/bib/bbs071

By:

Faria, José P.;
Overbeek, Ross;
Xia, Fangfang;
Rocha, Miguel;
Rocha, Isabel;
Henry, Christopher S.

Publication type:

Article

Converting tabular data into images for deep learning with convolutional neural networks.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90923-y

By:

Zhu, Yitan;
Brettin, Thomas;
Xia, Fangfang;
Partin, Alexander;
Shukla, Maulik;
Yoo, Hyunseung;
Evrard, Yvonne A.;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

Ensemble transfer learning for the prediction of anti-cancer drug response.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74921-0

By:

Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Partin, Alexander;
Xia, Fangfang;
Shukla, Maulik;
Yoo, Hyunseung;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing.

Published in:

Frontiers in Oncology, 2019, p. 1, doi. 10.3389/fonc.2019.00984

By:

Bhattacharya, Tanmoy;
Brettin, Thomas;
Doroshow, James H.;
Evrard, Yvonne A.;
Greenspan, Emily J.;
Gryshuk, Amy L.;
Hoang, Thuc T.;
Lauzon, Carolyn B. Vea;
Nissley, Dwight;
Penberthy, Lynne;
Stahlberg, Eric;
Stevens, Rick;
Streitz, Fred;
Tourassi, Georgia;
Xia, Fangfang;
Zaki, George

Publication type:

Article

A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening.

Published in:

Cancers, 2024, v. 16, n. 3, p. 530, doi. 10.3390/cancers16030530

By:

Vasanthakumari, Priyanka;
Zhu, Yitan;
Brettin, Thomas;
Partin, Alexander;
Shukla, Maulik;
Xia, Fangfang;
Narykov, Oleksandr;
Weil, Michael Ryan;
Stevens, Rick L.

Publication type:

Article

Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models.

Published in:

Cancers, 2024, v. 16, n. 1, p. 50, doi. 10.3390/cancers16010050

By:

Narykov, Oleksandr;
Zhu, Yitan;
Brettin, Thomas;
Evrard, Yvonne A.;
Partin, Alexander;
Shukla, Maulik;
Xia, Fangfang;
Clyde, Austin;
Vasanthakumari, Priyanka;
Doroshow, James H.;
Stevens, Rick L.

Publication type:

Article

Human CIK Cells Loaded with Au Nanorods as a Theranostic Platform for Targeted Photoacoustic Imaging and Enhanced Immunotherapy and Photothermal Therapy.

Published in:

Nanoscale Research Letters, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s11671-016-1468-8

By:

Yang, Yao;
Zhang, Jingjing;
Xia, Fangfang;
Zhang, Chunlei;
Qian, Qirong;
Zhi, Xiao;
Yue, Caixia;
Sun, Rongjin;
Cheng, Shangli;
Fang, Shan;
Jin, Weilin;
Yang, Yuming;
Cui, Daxiang

Publication type:

Article

The Potential of miR-370-3p and miR-495-3p Serving as Biomarkers for Sepsis-Associated Acute Kidney Injury.

Published in:

Computational & Mathematical Methods in Medicine, 2022, p. 1, doi. 10.1155/2022/2439509

By:

Ma, Wenlu;
Miao, Xiaomei;
Xia, Fangfang;
Ruan, Chao;
Tao, Dan;
Li, Bing

Publication type:

Article

Modeling central metabolism and energy biosynthesis across microbial life.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2887-8

By:

Edirisinghe, Janaka N.;
Weisenhorn, Pamela;
Conrad, Neal;
Fangfang Xia;
Overbeek, Ross;
Stevens, Rick L.;
Henry, Christopher S.

Publication type:

Article

Levosimendan is superior to epinephrine on coronary flow for lipid-base resuscitation of bupivacaine-induced asystole in the isolated rat heart.

Published in:

BMC Anesthesiology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12871-018-0627-0

By:

Chen, Hongfei;
Xia, Fangfang;
Jin, Zhousheng;
Shi, Kejian;
Xia, Yun;
Liu, Le;
Papadimos, Thomas J.;
Xu, Xuzhong;
Chen, Limei

Publication type:

Article

Lipid emulsion mitigates impaired pulmonary function induced by limb ischemia/reperfusion in rats through attenuation of local cellular injury and the subsequent systemic inflammatory.

Published in:

BMC Anesthesiology, 2017, v. 17, p. 1, doi. 10.1186/S12871-017-0375-6

By:

Fangfang Xia;
Yun Xia;
Sisi Chen;
Lulu Chen;
Weijuan Zhu;
Yuanqing Chen;
Papadimos, Thomas J.;
Xuzhong Xu;
Le Liu

Publication type:

Article

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004705

By:

Oberhardt, Matthew A.;
Zarecki, Raphy;
Reshef, Leah;
Xia, Fangfang;
Duran-Frigola, Miquel;
Schreiber, Rachel;
Henry, Christopher S.;
Ben-Tal, Nir;
Dwyer, Daniel J.;
Gophna, Uri;
Ruppin, Eytan

Publication type:

Article

Oligonucleotide nanoassemblies with allyl bromide scaffold-based small molecules.

Published in:

Discover Nano, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s11671-023-03846-0

By:

Abbas, Sk Jahir;
Yesmin, Sabina;
Xia, Fangfang;
Ali, Sk Imran;
Xiao, Zeyu;
Tan, Weihong

Publication type:

Article

Dexmedetomidine may decrease the bupivacaine toxicity to heart.

Published in:

Open Medicine, 2021, v. 16, n. 1, p. 1070, doi. 10.1515/med-2021-0311

By:

Zhousheng Jin;
Fangfang Xia;
Tingting Lin;
Yaoyao Cai;
Hongfei Chen;
Yuelan Wang

Publication type:

Article

Linear Dichroism Conversion in Quasi‐1D Weyl Semimetal (TaSe4)2I Crystal with Giant Optical Anisotropy.

Published in:

Advanced Optical Materials, 2024, v. 12, n. 27, p. 1, doi. 10.1002/adom.202401066

By:

Wei, Limei;
Zhang, Qing;
Wang, Shilei;
Ma, Yiran;
Wang, Ziming;
Xia, Fangfang;
Zhai, Tianyou;
Yuan, Hongtao;
Liu, Xiaohui;
Tao, Xutang;
Wang, Shanpeng

Publication type:

Article

Identification of an Attenuated Substrain of Francisella tularensis SCHU S4 by Phenotypic and Genotypic Analyses.

Published in:

Pathogens, 2021, v. 10, n. 6, p. 638, doi. 10.3390/pathogens10060638

By:

Lovchik, Julie A.;
Reed, Douglas S.;
Hutt, Julie A.;
Xia, Fangfang;
Stevens, Rick L.;
Modise, Thero;
Barry, Eileen M.;
Wu, Terry H.

Publication type:

Article

Comparison of Ultracentrifugation and Prekit-Exo Kit for the Identification of Exosomes Extracted from Serum of Gastric Cancer Patients.

Published in:

Nano Biomedicine & Engineering, 2018, v. 10, n. 4, p. 318

By:

Xiaoqing Qian;
Feng Xie;
Wenxiu Hou;
Tianliang Li;
Fangfang Xia;
Daxiang Cui

Publication type:

Article

Dendrimer-Modified Gold Nanorods as High Efficient Controlled Gene Delivery Release System under Near-Infrared Light Irradiation.

Published in:

Nano Biomedicine & Engineering, 2017, v. 9, n. 1, p. 82, doi. 10.5101/nbe.v9i1.p82-95

By:

Chenlu Li;
Fangfang Xia;
Kan Wang;
Can Wang;
Ping Xu;
Hong Zhang;
Jinping Wang;
Asahi Toru;
Jian Ni;
Daxiang Cui

Publication type:

Article

Human CIK Cells Loaded with Gold Nanoprisms as Theranostic Platform for Targeted Photoacoustic Imaging and Enhanced Immuno-Photothermal Combined Therapy.

Published in:

Nano Biomedicine & Engineering, 2016, v. 8, n. 3, p. 109, doi. 10.5101/nbe.v8i3.p112-127

By:

Jingjing Zhang;
Fangfang Xia;
Yao Yang;
Caixia Yue;
Chunlei Zhang;
Yuming Yang;
Lijun Ma;
Alfranca, Gabriel;
Yanlei Liu;
Yafei Hou;
Weilin Jin;
Jian Ni;
de la Fuente, Jesus Martinez;
Daxiang Cui

Publication type:

Article

TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks.

Published in:

Cancer Informatics, 2022, p. 1, doi. 10.1177/11769351221139491

By:

Jones, Sara;
Beyers, Matthew;
Shukla, Maulik;
Xia, Fangfang;
Brettin, Thomas;
Stevens, Rick;
Weil, M Ryan;
Ranganathan Ganakammal, Satishkumar

Publication type:

Article

TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks.

Published in:

Cancer Informatics, 2022, v. 21, p. 1, doi. 10.1177/11769351221139491

By:

Jones, Sara;
Beyers, Matthew;
Shukla, Maulik;
Fangfang Xia;
Brettin, Thomas;
Stevens, Rick;
Weil, M. Ryan;
Ganakammal, Satishkumar Ranganathan

Publication type:

Article

Recovering complete and draft population genomes from metagenome datasets.

Published in:

Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0154-5

By:

Sangwan, Naseer;
Fangfang Xia;
Gilbert, Jack A.

Publication type:

Article

Bupivacaine inhibits a small conductance calcium‐activated potassium type 2 channel in human embryonic kidney 293 cells.

Published in:

BMC Pharmacology & Toxicology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s40360-021-00481-2

By:

Chen, Hongfei;
Jin, Zhousheng;
Xia, Fangfang;
Fu, Zhijian

Publication type:

Article

Dexmedetomidine enhances tolerance to bupivacaine cardiotoxicity in the isolated rat hearts: alpha 2 adrenoceptors were not involved.

Published in:

BMC Pharmacology & Toxicology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s40360-019-0371-1

By:

Xia, Fangfang;
Jin, Zhousheng;
Lin, Tingting;
Cai, Xixi;
Pan, Linmin;
Wang, Shi;
Cai, Yaoyao;
Chen, Hongfei

Publication type:

Article

Second Harmonic Generation Control in 2D Layered Materials: Status and Outlook.

Published in:

Advanced Functional Materials, 2024, v. 34, n. 16, p. 1, doi. 10.1002/adfm.202310726

By:

Huang, Wenjuan;
Xiao, Yue;
Xia, Fangfang;
Chen, Xiangbai;
Zhai, Tianyou

Publication type:

Article

Self‐Trapped Excitons in 2D SnP2S6 Crystal with Intrinsic Structural Distortion.

Published in:

Advanced Functional Materials, 2022, v. 32, n. 38, p. 1, doi. 10.1002/adfm.202205757

By:

Zhang, Yue;
Wang, Fakun;
Feng, Xin;
Zhang, Zheng;
Liu, Kailang;
Xia, Fangfang;
Liang, Wenxi;
Hu, Xiaozong;
Ma, Ying;
Li, Huiqiao;
Xing, Guichuan;
Zhai, Tianyou

Publication type:

Article

In search of genome annotation consistency: solid gene clusters and how to use them.

Published in:

2014

By:

Davis, James;
Olsen, Gary;
Overbeek, Ross;
Vonstein, Veronika;
Xia, Fangfang

Publication type:

Report

Sufentanil Improves the Analgesia Effect of Continuous Femoral Nerve Block After Total Knee Arthroplasty.

Published in:

Journal of Pain Research, 2023, v. 16, p. 4209, doi. 10.2147/JPR.S409668

By:

Dong, Jiaojiao;
Jin, Zhousheng;
Chen, Hongfei;
Bao, Nana;
Xia, Fangfang

Publication type:

Article

Efficacy and safety of gut microbiome-targeted treatment in patients with depression: a systematic review and meta-analysis.

Published in:

2025

By:

Pan, Bo;
Pan, Yiming;
Huang, Yu-Song;
Yi, Meng;
Hu, Yuwei;
Lian, Xiaoyu;
Shi, Hui-Zhong;
Wang, Mingwei;
Xiang, Guifen;
Yang, Wen-Yi;
Liu, Zhong;
Xia, Fangfang

Publication type:

Literature Review

Predicting tumor cell line response to drug pairs with deep learning.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 71, doi. 10.1186/s12859-018-2509-3

By:

Xia, Fangfang;
Shukla, Maulik;
Brettin, Thomas;
Garcia-Cardona, Cristina;
Cohn, Judith;
Allen, Jonathan E.;
Maslov, Sergei;
Holbeck, Susan L.;
Doroshow, James H.;
Evrard, Yvonne A.;
Stahlberg, Eric A.;
Stevens, Rick L.

Publication type:

Article

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 18, p. 59, doi. 10.1186/s12859-018-2508-4

By:

Wozniak, Justin M.;
Jain, Rajeev;
Balaprakash, Prasanna;
Ozik, Jonathan;
Collier, Nicholson T.;
Bauer, John;
Xia, Fangfang;
Brettin, Thomas;
Stevens, Rick;
Mohd-Yusof, Jamaludin;
Cardona, Cristina Garcia;
Essen, Brian Van;
Baughman, Matthew

Publication type:

Article

Precise Synthesis and Broadband Photoresponse of Two‐Dimensional Intrinsic Vacancy Semiconductor.

Published in:

Small Structures, 2024, v. 5, n. 8, p. 1, doi. 10.1002/sstr.202400062

By:

Zhou, Nan;
Li, Haoran;
Li, Xiaobo;
Dang, Ziwei;
Sun, Zongdong;
Deng, Shijie;
Li, Junhao;
Xie, Yong;
Xu, Hua;
Xia, Fangfang;
Zhai, Tianyou

Publication type:

Article