Works by Wu, Chengkun

Results: 45

GSDMD and GSDME synergy in the transition of acute kidney injury to chronic kidney disease.

Published in:

Nephrology Dialysis Transplantation, 2024, v. 39, n. 8, p. 1344, doi. 10.1093/ndt/gfae014

By:

Chen, Zhengyue;
Chen, Caiming;
Lai, Kunmei;
Wu, Chengkun;
Wu, Fan;
Chen, Zhimin;
Ye, Keng;
Xie, Jingzhi;
Ma, Huabin;
Chen, Hong;
Wang, Yujia;
Xu, Yanfang

Publication type:

Article

MICER: a pre-trained encoder–decoder architecture for molecular image captioning.

Published in:

Bioinformatics, 2022, v. 38, n. 19, p. 4562, doi. 10.1093/bioinformatics/btac545

By:

Yi, Jiacai;
Wu, Chengkun;
Zhang, Xiaochen;
Xiao, Xinyi;
Qiu, Yanlong;
Zhao, Wentao;
Hou, Tingjun;
Cao, Dongsheng

Publication type:

Article

DeepKG: an end-to-end deep learning-based workflow for biomedical knowledge graph extraction, optimization and applications.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1477, doi. 10.1093/bioinformatics/btab767

By:

Li, Zongren;
Zhong, Qin;
Yang, Jing;
Duan, Yongjie;
Wang, Wenjun;
Wu, Chengkun;
He, Kunlun

Publication type:

Article

Denoise for propeller acoustic signals based on the improved wavelet thresholding algorithm of CEEMDAN.

Published in:

Cogent Engineering, 2024, v. 11, n. 1, p. 1, doi. 10.1080/23311916.2024.2327570

By:

Chengkun, Wu;
Zhifeng, Zhu;
Bohua, Cai;
Yong, Yao

Publication type:

Article

GTX.Digest.VCF: an online NGS datainterpretation system based on intelligentgene ranking and large-scale text mining.

Published in:

BMC Medical Genomics, 2019, v. 12, p. 1, doi. 10.1186/s12920-019-0637-x

By:

Yanhuang Jiang;
Chengkun Wu;
Yanghui Zhang;
Shaowei Zhang;
Shuojun Yu;
Peng Lei;
Qin Lu;
Yanwei Xi;
Hua Wang;
Zhuo Song

Publication type:

Article

A risk factor attention-based model for cardiovascular disease prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04963-w

By:

Qiu, Yanlong;
Wang, Wei;
Wu, Chengkun;
Zhang, Zhichang

Publication type:

Article

Correction to: Mining a stroke knowledge graph from literature.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04502-z

By:

Yang, Xi;
Wu, Chengkun;
Nenadic, Goran;
Wang, Wei;
Lu, Kai

Publication type:

Article

Mining microbe–disease interactions from literature via a transfer learning model.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04346-7

By:

Wu, Chengkun;
Xiao, Xinyi;
Yang, Canqun;
Chen, JinXiang;
Yi, Jiacai;
Qiu, Yanlong

Publication type:

Article

Constructing a database for the relations between CNV and human genetic diseases via systematic text mining.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 19, p. 125, doi. 10.1186/s12859-018-2526-2

By:

Yang, Xi;
Song, Zhuo;
Wu, Chengkun;
Wang, Wei;
Li, Gen;
Zhang, Wei;
Wu, Lingqian;
Lu, Kai

Publication type:

Article

Quality of oral anticoagulation control in Chinese patients with non-valvular atrial fibrillation: a prospective controlled study.

Published in:

Current Medical Research & Opinion, 2020, v. 36, n. 9, p. 1433, doi. 10.1080/03007995.2020.1796611

By:

Li, Yaqian;
Yu, Jingjing;
Kuang, Yun;
Wu, Chengkun;
Yang, Liu;
Fang, Qiulian;
Pei, Qi;
Yang, Guoping

Publication type:

Article

OptADMET: a web-based tool for substructure modifications to improve ADMET properties of lead compounds.

Published in:

Nature Protocols, 2024, v. 19, n. 4, p. 1105, doi. 10.1038/s41596-023-00942-4

By:

Yi, Jiacai;
Shi, Shaohua;
Fu, Li;
Yang, Ziyi;
Nie, Pengfei;
Lu, Aiping;
Wu, Chengkun;
Deng, Yafeng;
Hsieh, Changyu;
Zeng, Xiangxiang;
Hou, Tingjun;
Cao, Dongsheng

Publication type:

Article

GTZ: a fast compression and cloud transmission tool optimized for FASTQ files.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 233, doi. 10.1186/s12859-017-1973-5

By:

Yuting Xing;
Gen Li;
Zhenguo Wang;
Bolun Feng;
Zhuo Song;
Chengkun Wu

Publication type:

Article

Dependency-based long short term memory network for drug-drug interaction extraction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 99, doi. 10.1186/s12859-017-1962-8

By:

Wei Wang;
Xi Yang;
Canqun Yang;
Xiaowei Guo;
Xiang Zhang;
Chengkun Wu

Publication type:

Article

Effect of CeO2 NPs on stability of regenerated silk fibroin against UV‐aging.

Published in:

Journal of Applied Polymer Science, 2023, v. 140, n. 17, p. 1, doi. 10.1002/app.53788

By:

Jiang, Lei;
Wu, Chengkun;
Yao, Lu;
Dong, Qiuxia;
Wu, Guohua

Publication type:

Article

Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events.

Published in:

BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/1752-0509-9-S6-S5

By:

Chengkun Wu;
Schwartz, Jean-Marc;
Brabant, Georg;
Shao-Liang Peng;
Nenadic, Goran

Publication type:

Article

PathNER: a tool for systematic identification of biological pathway mentions in the literature.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S2

By:

Chengkun Wu;
Schwartz, Jean-Marc;
Nenadic, Goran

Publication type:

Article

Free energy perturbation–based large-scale virtual screening for effective drug discovery against COVID-19.

Published in:

International Journal of High Performance Computing Applications, 2023, v. 37, n. 1, p. 45, doi. 10.1177/10943420221117797

By:

Li, Zhe;
Wu, Chengkun;
Li, Yishui;
Liu, Runduo;
Lu, Kai;
Wang, Ruibo;
Liu, Jie;
Gong, Chunye;
Yang, Canqun;
Wang, Xin;
Zhan, Chang-Guo;
Luo, Hai-Bin

Publication type:

Article

Three-dimensional simulating plasmonic color of bifacial silicon solar cells with silver nanoparticles embedded within the rear antireflection layer.

Published in:

Materials Technology, 2022, v. 37, n. 13, p. 2727, doi. 10.1080/10667857.2022.2072261

By:

Wu, Xinyi;
Zou, Shuai;
Ni, Mengfei;
Sun, Hua;
Wu, Chengkun;
Lu, Zheng;
Ding, Jianming;
Ye, Xiaoya;
Wang, Xusheng;
Su, Xiaodong

Publication type:

Article

GT-WGS: an efficient and economic tool for large-scale WGS analyses based on the AWS cloud service.

Published in:

BMC Genomics, 2018, v. 19, p. 89, doi. 10.1186/s12864-017-4334-x

By:

Wang, Yiqi;
Li, Gen;
Ma, Mark;
He, Fazhong;
Song, Zhuo;
Zhang, Wei;
Wu, Chengkun

Publication type:

Article

A solid strategy to realize heteroface selective emitter and rear passivated silicon solar cells.

Published in:

Progress in Photovoltaics, 2022, v. 30, n. 11, p. 1343, doi. 10.1002/pip.3594

By:

Zou, Shuai;
Ye, Xiaoya;
Ding, Jianming;
Wu, Chengkun;
Wang, Shaozhou;
Scardera, Giuseppe;
Abbott, Malcolm;
Zhang, Yu;
Fan, Ronglei;
Xu, Yadong;
Wang, Xusheng;
Shen, Mingrong;
Su, Xiaodong

Publication type:

Article

Light management of PERC solar cell with the front and back dielectric multilayers.

Published in:

Progress in Photovoltaics, 2022, v. 30, n. 2, p. 180, doi. 10.1002/pip.3475

By:

Ding, Jianming;
Zou, Shuai;
Wu, Chengkun;
Shen, Leilei;
Choi, Jonghyung;
Cui, Junhu;
Yuan, Dichun;
Sun, Hua;
Zhang, Xiaohong;
Su, Xiaodong

Publication type:

Article

Forming submicron in micron texture on the diamond‐wire‐sawn mc‐Si wafer by introducing artificial defects.

Published in:

Progress in Photovoltaics, 2020, v. 28, n. 8, p. 788, doi. 10.1002/pip.3271

By:

Wu, Chengkun;
Zou, Shuai;
Zhu, Jingyan;
Ye, Xiaoya;
Ding, Jianming;
Sun, Hua;
Wang, Xusheng;
Xing, Guoqiang;
Zhang, Xiaohong;
Su, Xiaodong

Publication type:

Article

Complementary etching behavior of alkali, metal‐catalyzed chemical, and post‐etching of multicrystalline silicon wafers.

Published in:

Progress in Photovoltaics, 2019, v. 27, n. 6, p. 511, doi. 10.1002/pip.3125

By:

Zou, Shuai;
Ye, Xiaoya;
Wu, Chengkun;
Cheng, Kexun;
Fang, Liang;
Tang, Rujun;
Shen, Mingrong;
Wang, Xusheng;
Su, Xiaodong

Publication type:

Article

SARS-CoV-2 Omicron RBD shows weaker binding affinity than the currently dominant Delta variant to human ACE2.

Published in:

2022

By:

Wu, Leyun;
Zhou, Liping;
Mo, Mengxia;
Liu, Tingting;
Wu, Chengkun;
Gong, Chunye;
Lu, Kai;
Gong, Likun;
Zhu, Weiliang;
Xu, Zhijian

Publication type:

Letter

DDInter 2.0: an enhanced drug interaction resource with expanded data coverage, new interaction types, and improved user interface.

Published in:

Nucleic Acids Research, 2025, v. 53, n. D1, p. D1356, doi. 10.1093/nar/gkae726

By:

Tian, Yao;
Yi, Jiacai;
Wang, Ningning;
Wu, Chengkun;
Peng, Jinfu;
Liu, Shao;
Yang, Guoping;
Cao, Dongsheng

Publication type:

Article

ChemFH: an integrated tool for screening frequent false positives in chemical biology and drug discovery.

Published in:

Nucleic Acids Research, 2024, v. 52, n. W1, p. W439, doi. 10.1093/nar/gkae424

By:

Shi, Shaohua;
Fu, Li;
Yi, Jiacai;
Yang, Ziyi;
Zhang, Xiaochen;
Deng, Youchao;
Wang, Wenxuan;
Wu, Chengkun;
Zhao, Wentao;
Hou, Tingjun;
Zeng, Xiangxiang;
Lyu, Aiping;
Cao, Dongsheng

Publication type:

Article

ADMETlab 3.0: an updated comprehensive online ADMET prediction platform enhanced with broader coverage, improved performance, API functionality and decision support.

Published in:

Nucleic Acids Research, 2024, v. 52, n. W1, p. W422, doi. 10.1093/nar/gkae236

By:

Fu, Li;
Shi, Shaohua;
Yi, Jiacai;
Wang, Ningning;
He, Yuanhang;
Wu, Zhenxing;
Peng, Jinfu;
Deng, Youchao;
Wang, Wenxuan;
Wu, Chengkun;
Lyu, Aiping;
Zeng, Xiangxiang;
Zhao, Wentao;
Hou, Tingjun;
Cao, Dongsheng

Publication type:

Article

DDInter: an online drug–drug interaction database towards improving clinical decision-making and patient safety.

Published in:

Nucleic Acids Research, 2022, v. 50, n. D1, p. D1200, doi. 10.1093/nar/gkab880

By:

Xiong, Guoli;
Yang, Zhijiang;
Yi, Jiacai;
Wang, Ningning;
Wang, Lei;
Zhu, Huimin;
Wu, Chengkun;
Lu, Aiping;
Chen, Xiang;
Liu, Shao;
Hou, Tingjun;
Cao, Dongsheng

Publication type:

Article

ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W5, doi. 10.1093/nar/gkab255

By:

Xiong, Guoli;
Wu, Zhenxing;
Yi, Jiacai;
Fu, Li;
Yang, Zhijiang;
Hsieh, Changyu;
Yin, Mingzhu;
Zeng, Xiangxiang;
Wu, Chengkun;
Lu, Aiping;
Chen, Xiang;
Hou, Tingjun;
Cao, Dongsheng

Publication type:

Article

Modeling study of wake cavitation characteristics of DTMB propeller based on numerical computation.

Published in:

Proceedings of the Institution of Mechanical Engineers, Part M: Journal of Engineering for the Maritime Environment (Sage Publications, Ltd.), 2025, v. 239, n. 2, p. 340, doi. 10.1177/14750902241272778

By:

Chengkun, Wu;
Zhu, Zhifeng;
Bohua, Cai;
Yong, Yao

Publication type:

Article

ParaCopasi: A package for parallel biochemical simulation and analysis.

Published in:

Journal of Computational Chemistry, 2022, v. 43, n. 2, p. 144, doi. 10.1002/jcc.26775

By:

Yuan, Lihuan;
Wu, Chengkun;
Guo, Xiaowei;
Yang, Canqun

Publication type:

Article

Ultrasmall platinum single-atom enzyme alleviates oxidative stress and macrophage polarization induced by acute kidney ischemia–reperfusion injury through inhibition of cell death storm.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03392-0

By:

Ye, Keng;
Lin, Kongwen;
Wu, Chengkun;
Zou, Zhenhuan;
Zhu, Yang;
Xu, Yanfang

Publication type:

Article

Ultrasmall platinum single-atom enzyme alleviates oxidative stress and macrophage polarization induced by acute kidney ischemia–reperfusion injury through inhibition of cell death storm.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03392-0

By:

Ye, Keng;
Lin, Kongwen;
Wu, Chengkun;
Zou, Zhenhuan;
Zhu, Yang;
Xu, Yanfang

Publication type:

Article

LINC00173 silence and estrone supply suppress ER+ breast cancer by estrogen receptor α degradation and LITAF activation.

Published in:

Cancer Science, 2024, v. 115, n. 7, p. 2318, doi. 10.1111/cas.16201

By:

Xie, Yu;
Shan, Meihua;
Yu, Jing;
Du, Yongjun;
Wu, Chengkun;
Liu, Shujing;
Li, Jiayin;
Xiao, Yupeng;
Yan, Yan;
Li, Ning;
Qin, Junfang;
Lan, Lan;
Wang, Yue

Publication type:

Article

P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3497-9

By:

Shaoliang Peng;
Shunyun Yang;
Ming Gao;
Xiangke Liao;
Jie Liu;
Canqun Yang;
Chengkun Wu;
Wenqiang Yu

Publication type:

Article

ParaBTM: A Parallel Processing Framework for Biomedical Text Mining on Supercomputers.

Published in:

Molecules, 2018, v. 23, n. 5, p. 1028, doi. 10.3390/molecules23051028

By:

Xing, Yuting;
Wu, Chengkun;
Yang, Xi;
Wang, Wei;
Zhu, En;
Yin, Jianping

Publication type:

Article

An Interface for Biomedical Big Data Processing on the Tianhe-2 Supercomputer.

Published in:

Molecules, 2017, v. 22, n. 12, p. 2116, doi. 10.3390/molecules22122116

By:

Xi Yang;
Chengkun Wu;
Kai Lu;
Lin Fang;
Yong Zhang;
Shengkang Li;
Guixin Guo;
YunFei Du

Publication type:

Article

In Situ Generating YVO4:Eu3+,Bi3+ Downshifting Phosphors in SiO2 Antireflection Coating for Efficiency Enhancement and Ultraviolet Stability of Silicon Solar Cells.

Published in:

Solar RRL, 2023, v. 7, n. 12, p. 1, doi. 10.1002/solr.202300215

By:

Gu, Siwei;
Lu, Zheng;
Zou, Shuai;
Wu, Chengkun;
Peng, Chen-wei;
Ni, Mengfei;
Chen, Zhenzhen;
Huang, Hao;
Sun, Hua;
Wang, Haibo;
Zhang, Xiaohong;
Su, Xiaodong

Publication type:

Article

Ultrafast Random‐Pyramid Texturing for Efficient Monocrystalline Silicon Solar Cells.

Published in:

Solar RRL, 2022, v. 6, n. 7, p. 1, doi. 10.1002/solr.202200204

By:

Zhu, Lei;
Zou, Shuai;
Ni, Mengfei;
Ding, Jianming;
Wu, Chengkun;
Lu, Zheng;
Zeng, Yulian;
Ye, Xiaoya;
Wang, Xusheng;
Fan, Ronglei;
Sun, Hua;
Liao, Baochen;
Xu, Yadong;
Shen, Mingrong;
Su, Xiaodong

Publication type:

Article

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing.

Published in:

2015

By:

Murabito, Ettore;
Colombo, Riccardo;
Wu, Chengkun;
Verma, Malkhey;
Rehman, Samrina;
Snoep, Jacky;
Peng, Shao-Liang;
Guan, Naiyang;
Liao, Xiangke;
Westerhoff, Hans

Publication type:

Report

Meeting report on YBPW 2014 (the 3rd Young Bioinformatics PIs Workshop).

Published in:

Quantitative Biology, 2014, v. 2, n. 2, p. 80, doi. 10.1007/s40484-014-0034-6

By:

Sun, Mengyi;
Yan, Bingyu;
Wu, Chengkun;
Liu, Xiaole

Publication type:

Article

Molecular profiling of thyroid cancer subtypes using large-scale text mining.

Published in:

BMC Medical Genomics, 2014, v. 7, p. 1, doi. 10.1186/1755-8794-7-S3-S3

By:

Chengkun Wu;
Schwartz, Jean-Marc;
Brabant, Georg;
Nenadic, Goran

Publication type:

Article

Caspase-11/GSDMD contributes to the progression of hyperuricemic nephropathy by promoting NETs formation.

Published in:

Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05136-z

By:

Wu, Fan;
Chen, Caiming;
Lin, Guo;
Wu, Chengkun;
Xie, Jingzhi;
Lin, Kongwen;
Dai, Xingchen;
Chen, Zhengyue;
Ye, Keng;
Yuan, Ying;
Chen, Zhimin;
Ma, Huabin;
Lin, Zishan;
Xu, Yanfang

Publication type:

Article

Mining a stroke knowledge graph from literature.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04292-4

By:

Yang, Xi;
Wu, Chengkun;
Nenadic, Goran;
Wang, Wei;
Lu, Kai

Publication type:

Article

CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03899-3

By:

Wang, Wei;
Yang, Xi;
Wu, Chengkun;
Yang, Canqun

Publication type:

Article