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Accomplishments and challenges in literature data mining for biology.
- Published in:
- Bioinformatics, 2002, v. 18, n. 12, p. 1553, doi. 10.1093/bioinformatics/18.12.1553
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- Publication type:
- Article
PIR: a new resource for bioinformatics.
- Published in:
- Bioinformatics, 2000, v. 16, n. 3, p. 290, doi. 10.1093/bioinformatics/16.3.290
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- Publication type:
- Article
Protein-protein interaction prediction based on multiple kernels and partial network with linear programming.
- Published in:
- BMC Systems Biology, 2016, v. 10, p. 151, doi. 10.1186/s12918-016-0296-x
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- Publication type:
- Article
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-120
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- Publication type:
- Article
A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-285
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- Publication type:
- Article
Overview of the BioCreative III Workshop.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S1
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- Publication type:
- Article
BioTagger-GM: a gene/protein name recognition system.
- Published in:
- 2009
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- Publication type:
- journal article
Bio Tagger-GM: A Gene/Protein Name Recognition System.
- Published in:
- Journal of the American Medical Informatics Association, 2009, v. 16, n. 2, p. 247, doi. 10.1197/jamia.M2844
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- Publication type:
- Article
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz157
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- Publication type:
- Article
PIRSitePredict for protein functional site prediction using position-specific rules.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz026
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- Publication type:
- Article
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay128
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- Publication type:
- Article
DEXTER: Disease-Expression Relation Extraction from Text.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay045
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- Publication type:
- Article
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax081
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- Publication type:
- Article
BioC-compatible full-text passage detection for protein-rotein interactions using extended dependency graph.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw072
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- Publication type:
- Article
Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav020
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- Publication type:
- Article
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau081
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- Publication type:
- Article
BioC interoperability track overview.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau053
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- Publication type:
- Article
BioCreative-IV virtual issue.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau039
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- Publication type:
- Article
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau038
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- Publication type:
- Article
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat038
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- Publication type:
- Article
BioC: a minimalist approach to interoperability for biomedical text processing.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat064
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- Publication type:
- Article
The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas044
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- Publication type:
- Article
Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar064
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- Publication type:
- Article
Text mining for the biocuration workflow.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas020
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- Publication type:
- Article
BioCreative-2012 Virtual Issue.
- Published in:
- 2012
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- Publication type:
- Editorial
A crowdsourcing open platform for literature curation in UniProt.
- Published in:
- PLoS Biology, 2021, v. 19, n. 12, p. 1, doi. 10.1371/journal.pbio.3001464
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- Publication type:
- Article
Protein ontology on the semantic web for knowledge discovery.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00679-9
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- Publication type:
- Article
Text mining of CHO bioprocess bibliome: Topic modeling and document classification.
- Published in:
- PLoS ONE, 2023, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0274042
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- Publication type:
- Article
TGF-beta signaling proteins and the Protein Ontology.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S5-S3
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- Publication type:
- Article
A comparison study on algorithms of detecting long forms for short forms in biomedical text.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S9-S5
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- Publication type:
- Article
Framework for a Protein Ontology.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S9-S1
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- Publication type:
- Article
Computational identification of strain-, species- and genus-specific proteins.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 279, doi. 10.1186/1471-2105-6-279
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- Publication type:
- Article
DynGO: a tool for visualizing and mining of Gene Ontology and its associations.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 201, doi. 10.1186/1471-2105-6-201
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- Publication type:
- Article
miRTex: A Text Mining System for miRNA-Gene Relation Extraction.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004391
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- Publication type:
- Article
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4597, doi. 10.1093/bioinformatics/btab694
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- Publication type:
- Article
Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018910
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- Publication type:
- Article
Phylogenomic Analysis of Marine Roseobacters.
- Published in:
- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011604
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- Publication type:
- Article
Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets.
- Published in:
- PLoS ONE, 2009, v. 4, n. 9, p. 1, doi. 10.1371/journal.pone.0007162
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- Publication type:
- Article
Community annotation in biology.
- Published in:
- Biology Direct, 2010, v. 5, p. 12, doi. 10.1186/1745-6150-5-12
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- Publication type:
- Article
Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses.
- Published in:
- BMC Plant Biology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12870-022-03477-0
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- Publication type:
- Article
KSFinder--a knowledge graph model for link prediction of novel phosphorylated substrates of kinases.
- Published in:
- PeerJ, 2023, p. 1, doi. 10.7717/peerj.16164
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- Publication type:
- Article
miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases.
- Published in:
- 2016
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- Publication type:
- Product Review
Gene Family Identification Network Design for Protein Sequence Analysis.
- Published in:
- International Journal on Artificial Intelligence Tools, 1999, v. 8, n. 4, p. 419, doi. 10.1142/S0218213099000282
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- Publication type:
- Article
GENE CLASSIFICATION ARTIFICIAL NEURAL SYSTEM.
- Published in:
- International Journal on Artificial Intelligence Tools, 1995, v. 4, n. 4, p. 501, doi. 10.1142/S0218213095000255
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- Publication type:
- Article
Automatic gene annotation using GO terms from cellular component domain.
- Published in:
- 2018
- By:
- Publication type:
- journal article
Completing sparse and disconnected protein-protein network by deep learning.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2112-7
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- Publication type:
- Article
iPTMnet: an integrated resource for protein post-translational modification network discovery.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D542, doi. 10.1093/nar/gkx1104
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- Publication type:
- Article
The Protein Ontology: a structured representation of protein forms and complexes.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907
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- Publication type:
- Article
Evolutionary analysis and interaction prediction for protein-protein interaction network in geometric space.
- Published in:
- PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0183495
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- Publication type:
- Article
Computational clustering for viral reference proteomes.
- Published in:
- Bioinformatics, 2016, v. 32, n. 13, p. 2041, doi. 10.1093/bioinformatics/btw110
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- Publication type:
- Article