Works by Woyke, Tanja

Results: 233
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    Author Correction: Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.

    Published in:
    2025
    By:
    • Nou, Nancy O.;
    • Covington, Jonathan K.;
    • Lai, Dengxun;
    • Mayali, Xavier;
    • Seymour, Cale O.;
    • Johnston, Juliet;
    • Jiao, Jian-Yu;
    • Buessecker, Steffen;
    • Mosier, Damon;
    • Muok, Alise R.;
    • Torosian, Nicole;
    • Cook, Allison M.;
    • Briegel, Ariane;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley;
    • Shapiro, Nicole;
    • Bryan, Scott G.;
    • Sleezer, Savannah;
    • Dimapilis, Joshua;
    • Gonzalez, Cristina
    Publication type:
    Correction Notice
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    Author Correction: Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.

    Published in:
    2025
    By:
    • Nou, Nancy O.;
    • Covington, Jonathan K.;
    • Lai, Dengxun;
    • Mayali, Xavier;
    • Seymour, Cale O.;
    • Johnston, Juliet;
    • Jiao, Jian-Yu;
    • Buessecker, Steffen;
    • Mosier, Damon;
    • Muok, Alise R.;
    • Torosian, Nicole;
    • Cook, Allison M.;
    • Briegel, Ariane;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley;
    • Shapiro, Nicole;
    • Bryan, Scott G.;
    • Sleezer, Savannah;
    • Dimapilis, Joshua;
    • Gonzalez, Cristina
    Publication type:
    Correction Notice
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    The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

    Published in:
    Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.735911
    By:
    • Eardly, Bertrand;
    • Meor Osman, Wan Adnawani;
    • Ardley, Julie;
    • Zandberg, Jaco;
    • Gollagher, Margaret;
    • van Berkum, Peter;
    • Elia, Patrick;
    • Marinova, Dora;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Loedolff, Matthys;
    • Laird, Damian W.;
    • Reeve, Wayne
    Publication type:
    Article
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    Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

    Published in:
    BMC Genomics, 2011, v. 12, n. 1, p. 235, doi. 10.1186/1471-2164-12-235
    By:
    • Galardini, Marco;
    • Mengoni, Alessio;
    • Brilli, Matteo;
    • Pini, Francesco;
    • Fioravanti, Antonella;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Jan-Fang Cheng;
    • Goodwin, Lynne;
    • Pitluck, Samuel;
    • Land, Miriam;
    • Hauser, Loren;
    • Woyke, Tanja;
    • Mikhailova, Natalia;
    • Ivanova, Natalia;
    • Daligault, Hajnalka;
    • Bruce, David;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Cliff
    Publication type:
    Article
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    Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California.

    Published in:
    Extremophiles, 2018, v. 22, n. 6, p. 983, doi. 10.1007/s00792-018-1055-2
    By:
    • Zhou, En-Min;
    • Xian, Wen-Dong;
    • Mefferd, Chrisabelle C.;
    • Thomas, Scott C.;
    • Adegboruwa, Arinola L.;
    • Williams, Nathan;
    • Murugapiran, Senthil K.;
    • Dodsworth, Jeremy A.;
    • Ganji, Rakesh;
    • Li, Meng-Meng;
    • Ding, Yi-Ping;
    • Liu, Lan;
    • Woyke, Tanja;
    • Li, Wen-Jun;
    • Hedlund, Brian P.
    Publication type:
    Article
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    Lytic archaeal viruses infect abundant primary producers in Earth's crust.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24803-4
    By:
    • Rahlff, Janina;
    • Turzynski, Victoria;
    • Esser, Sarah P.;
    • Monsees, Indra;
    • Bornemann, Till L. V.;
    • Figueroa-Gonzalez, Perla Abigail;
    • Schulz, Frederik;
    • Woyke, Tanja;
    • Klingl, Andreas;
    • Moraru, Cristina;
    • Probst, Alexander J.
    Publication type:
    Article
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    One Bacterial Cell, One Complete Genome.

    Published in:
    PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010314
    By:
    • Woyke, Tanja;
    • Tighe, Damon;
    • Mavromatis, Konstantinos;
    • Clum, Alicia;
    • Copeland, Alex;
    • Schackwitz, Wendy;
    • Lapidus, Alla;
    • Dongying Wu;
    • McCutcheon, John P.;
    • McDonald, Bradon R.;
    • Moran, Nancy A.;
    • Bristow, James;
    • Jan-Fang Cheng
    Publication type:
    Article
    26

    Assembling the Marine Metagenome, One Cell at a Time.

    Published in:
    PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005299
    By:
    • Woyke, Tanja;
    • Xie, Gary;
    • Copeland, Alex;
    • González, José M.;
    • Han, Cliff;
    • Kiss, Hajnalka;
    • Saw, Jimmy H.;
    • Senin, Pavel;
    • Chi Yang;
    • Chatterji, Sourav;
    • Jan-Fang Cheng;
    • Eisen, Jonathan A.;
    • Sieracki, Michael E.;
    • Stepanauskas, Ramunas
    Publication type:
    Article
    27

    Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.

    Published in:
    BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6623-z
    By:
    • Klonowska, Agnieszka;
    • Moulin, Lionel;
    • Ardley, Julie Kaye;
    • Braun, Florence;
    • Gollagher, Margaret Mary;
    • Zandberg, Jaco Daniel;
    • Marinova, Dora Vasileva;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha Jacob;
    • Woyke, Tanja;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Kyrpides, Nikos;
    • Reeve, Wayne Gerald
    Publication type:
    Article
    28

    Phylogenomics and genetic analysis of solvent-producing Clostridium species.

    Published in:
    Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03210-6
    By:
    • Jensen, Rasmus O.;
    • Schulz, Frederik;
    • Roux, Simon;
    • Klingeman, Dawn M.;
    • Mitchell, Wayne P.;
    • Udwary, Daniel;
    • Moraïs, Sarah;
    • Reynoso, Vinicio;
    • Winkler, James;
    • Nagaraju, Shilpa;
    • De Tissera, Sashini;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Reddy, T. B. K.;
    • Mizrahi, Itzhak;
    • Utturkar, Sagar M.;
    • Bayer, Edward A.;
    • Woyke, Tanja;
    • Mouncey, Nigel J.;
    • Jewett, Michael C.
    Publication type:
    Article
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    High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2
    By:
    • Meor Osman, Wan Adnawani;
    • van Berkum, Peter;
    • León-Barrios, Milagros;
    • Velázquez, Encarna;
    • Elia, Patrick;
    • Rui Tian;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Pati, Amrita;
    • Markowitz, Victor;
    • Baeshen, Mohamed N.;
    • Nabeeh Baeshen, Naseebh;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
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    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
    By:
    • Reeve, Wayne;
    • van Berkum, Peter;
    • Ardley, Julie;
    • Tian, Rui;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Elia, Patrick;
    • Reddy, T. B. K.;
    • Pillay, Manoj;
    • Varghese, Neha;
    • Seshadri, Rekha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos
    Publication type:
    Article
    34

    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
    By:
    • Patil, Yogita;
    • Müller, Nicolai;
    • Schink, Bernhard;
    • Whitman, William B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Junghare, Madan
    Publication type:
    Article
    35

    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
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    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4
    By:
    • Klonowska, Agnieszka;
    • López-López, Aline;
    • Moulin, Lionel;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Tian, Rui;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Woyke, Tanja;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    40

    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

    Published in:
    Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
    By:
    • Boden, Rich;
    • Hutt, Lee P.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Chew Yee Ngan;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
    44

    Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4
    By:
    • Rice, Marlen C.;
    • Norton, Jeanette M.;
    • Valois, Frederica;
    • Bollmann, Annette;
    • Bottomley, Peter J.;
    • Klotz, Martin G.;
    • Laanbroek, Hendrikus J.;
    • Suwa, Yuichi;
    • Stein, Lisa Y.;
    • Sayavedra-Soto, Luis;
    • Woyke, Tanja;
    • Shapiro, Nicole;
    • Goodwin, Lynne A.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Kyrpides, Nikos;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Markowitz, Victor
    Publication type:
    Article
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    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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