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Foodborne Origin and Local and Global Spread of Staphylococcus saprophyticus Causing Human Urinary Tract Infections.
Published in:
2021
By:
- Lawal, Opeyemi U.;
- Fraqueza, Maria J.;
- Bouchami, Ons;
- Worning, Peder;
- Bartels, Mette D.;
- Gonçalves, Maria L.;
- Paixa~o, Paulo;
- Gonçalves, Elsa;
- Toscano, Cristina;
- Empel, Joanna;
- Urbaś, Małgorzata;
- Domínguez, M. Angeles;
- Westh, Henrik;
- de Lencastre, Hermínia;
- Miragaia, Maria;
- Paixão, Paulo
Publication type:
journal article
Surveillance of vancomycin-resistant enterococci reveals shift in dominating clusters from vanA to vanB Enterococcus faecium clusters, Denmark, 2015 to 2022.
Published in:
Eurosurveillance (15607917), 2024, v. 29, n. 23, p. 8, doi. 10.2807/1560-7917.ES.2024.29.23.2300633
By:
- Hammerum, Anette M.;
- Karstensen, Kasper Thystrup;
- Roer, Louise;
- Kaya, Hülya;
- Lindegaard, Mikkel;
- Porsbo, Lone Jannok;
- Kjerulf, Anne;
- Pinholt, Mette;
- Holzknecht, Barbara Juliane;
- Worning, Peder;
- Nielsen, Karen Leth;
- Hansen, Sanne Grønvall Kjær;
- Clausen, Marianne;
- Sondergaard, Turid S.;
- Dzajic, Esad;
- Østergaard, Claus;
- Wang, Mikala;
- Koch, Kristoffer;
- Hasman, Henrik
Publication type:
Article
Surveillance of vancomycin-resistant enterococci reveals shift in dominating clones and national spread of a vancomycin-variable vanA Enterococcus faecium ST1421-CT1134 clone, Denmark, 2015 to March 2019.
Published in:
Eurosurveillance (15607917), 2019, v. 24, n. 34, p. 2, doi. 10.2807/1560-7917.ES.2019.24.34.1900503
By:
- Hammerum, Anette M.;
- Justesen, Ulrik S.;
- Pinholt, Mette;
- Roer, Louise;
- Kaya, Hülya;
- Worning, Peder;
- Nygaard, Sanne;
- Kemp, Michael;
- Clausen, Marianne Engell;
- Nielsen, Karen Leth;
- Samulioniené, Jurgita;
- Kjarsgaard, Mona;
- Østergaard, Claus;
- Coia, John;
- Søndergaard, Turid Snekloth;
- Gaini, Shahin;
- Schønning, Kristian;
- Westh, Henrik;
- Hasman, Henrik;
- Holzknecht, Barbara Juliane
Publication type:
Article
Ceftriaxone-resistant Salmonella enterica serotype Typhi in a pregnant traveller returning from Karachi, Pakistan to Denmark, 2019.
Published in:
Eurosurveillance (15607917), 2019, v. 24, n. 21, p. 8, doi. 10.2807/1560-7917.ES.2019.24.21.1900289
By:
- Engsbro, Anne Line;
- Jespersen, Hans Søe Riis;
- Goldschmidt, Maria Ingeborg;
- Mollerup, Sarah;
- Worning, Peder;
- Pedersen, Martin Schou;
- Westh, Henrik;
- Schneider, Uffe Vest
Publication type:
Article
Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveal clonal diversity and date the emergence of persisting sequence types.
Published in:
Environmental Microbiology Reports, 2017, v. 9, n. 4, p. 428, doi. 10.1111/1758-2229.12552
By:
- Knudsen, Gitte M.;
- Nielsen, Jesper Boye;
- Marvig, Rasmus L.;
- Ng, Yin;
- Worning, Peder;
- Westh, Henrik;
- Gram, Lone
Publication type:
Article
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen.
Published in:
APMIS, 2023, v. 131, n. 6, p. 294, doi. 10.1111/apm.13318
By:
- Bartels, Mette Damkjær;
- Holm, Mona Katrine Alberthe;
- Worning, Peder;
- Stavad, Bodil;
- Schneider, Uffe Vest;
- Meiniche, Heidi;
- Thiesen, Henrik;
- Westh, Henrik
Publication type:
Article
Predicting the primary infection source of Escherichia coli bacteremia using virulence-associated genes.
Published in:
European Journal of Clinical Microbiology & Infectious Diseases, 2024, v. 43, n. 4, p. 641, doi. 10.1007/s10096-024-04754-6
By:
- Ilsby, Christian Schaadt;
- Hertz, Frederik Boetius;
- Westh, Henrik;
- Monk, Jonathan;
- Worning, Peder;
- Johansen, Helle Krogh;
- Hansen, Katrine Hartung;
- Pinholt, Mette
Publication type:
Article
Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017.
Published in:
Eurosurveillance (15607917), 2017, v. 22, n. 42, p. 6, doi. 10.2807/1560-7917.ES.2017.22.42.17-00659
By:
- Terkelsen, David;
- Tolstrup, Jacob;
- Johnsen, Camilla Hundahl;
- Lund, Ole;
- Larsen, Helle Kiellberg;
- Worning, Peder;
- Unemo, Magnus;
- Westh, Henrik
Publication type:
Article
Associations between <i>dru</i> Types and SCC<i>mec</i> Cassettes.
Published in:
PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061860
By:
- Bartels, Mette D.;
- Boye, Kit;
- Oliveira, Duarte C.;
- Worning, Peder;
- Goering, Richard;
- Westh, Henrik
Publication type:
Article
Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.
Published in:
Nucleic Acids Research, 2000, v. 28, n. 3, p. 706, doi. 10.1093/nar/28.3.706
By:
- Worning, Peder;
- Jensen, Lars J.;
- Nelson, Karen E.;
- Brunak, Søren;
- Ussery, David W.
Publication type:
Article
Origin of replication in circular prokaryotic chromosomes.
Published in:
Environmental Microbiology, 2006, v. 8, n. 2, p. 353, doi. 10.1111/j.1462-2920.2005.00917.x
By:
- Worning, Peder;
- Jensen, Lars J.;
- Hallin, Peter F.;
- Stærfeldt, Hans-Henrik;
- Ussery, David W.
Publication type:
Article
A Sporadic Four-Year Hospital Outbreak of a ST97-IVa MRSA With Half of the Patients First Identified in the Community.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01494
By:
- Rubin, Ingrid M.;
- Hansen, Thomas A.;
- Klingenberg, Anne Mette;
- Petersen, Andreas M.;
- Worning, Peder;
- Westh, Henrik;
- Bartels, Mette D.
Publication type:
Article
Whole Genome Sequencing of Danish Staphylococcus argenteus Reveals a Genetically Diverse Collection with Clear Separation from Staphylococcus aureus.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01512
By:
- Hansen, Thomas A.;
- Bartels, Mette D.;
- Høgh, Silje V.;
- Dons, Lone E.;
- Pedersen, Michael;
- Jensen, Thøger G.;
- Kemp, Michael;
- Skov, Marianne N.;
- Gumpert, Heidi;
- Worning, Peder;
- Westh, Henrik
Publication type:
Article
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
Published in:
Bioinformatics, 2004, v. 20, n. 9, p. 1388, doi. 10.1093/bioinformatics/bth100
By:
- Morten Nielsen;
- Claus Lundegaard;
- Peder Worning;
- Christina Sylvester Hvid;
- Kasper Lamberth;
- Søren Buus;
- Søren Brunak;
- Ole Lund
Publication type:
Article
Staphylococcus saprophyticus From Clinical and Environmental Origins Have Distinct Biofilm Composition.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.663768
By:
- Lawal, Opeyemi U.;
- Barata, Marta;
- Fraqueza, Maria J.;
- Worning, Peder;
- Bartels, Mette D.;
- Goncalves, Luisa;
- Paixão, Paulo;
- Goncalves, Elsa;
- Toscano, Cristina;
- Empel, Joanna;
- Urbaś, Malgorzata;
- Domiìnguez, Maria A.;
- Westh, Henrik;
- de Lencastre, Hermínia;
- Miragaia, Maria
Publication type:
Article
Definition of supertypes for HLA molecules using clustering of specificity matrices.
Published in:
Immunogenetics, 2004, v. 55, n. 12, p. 797, doi. 10.1007/s00251-004-0647-4
By:
- Lund, Ole;
- Nielsen, Morten;
- Kesmir, Can;
- Petersen, Anders Gorm;
- Lundegaard, Claus;
- Worning, Peder;
- Sylvester-Hvid, Christina;
- Lamberth, Kasper;
- Røder, Gustav;
- Justesen, Sune;
- Buus, Søren;
- Brunak, Søren
Publication type:
Article
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations.
Published in:
Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 5, p. 1007, doi. 10.1110/ps.0239403
By:
- Nielsen, Morten;
- Lundegaard, Claus;
- Worning, Peder;
- Lauemøller, Sanne Lise;
- Lamberth, Kasper;
- Buus, Søren;
- Brunak, Søren;
- Lund, Ole
Publication type:
Article
Within-host genomic evolution of methicillin-resistant Staphylococcus aureus in long-term carriers.
Published in:
Applied Microbiology & Biotechnology, 2024, v. 108, n. 1, p. 1, doi. 10.1007/s00253-023-12932-3
By:
- Larsen, Tine Graakjær;
- Samaniego Castruita, Jose Alfredo;
- Worning, Peder;
- Westh, Henrik;
- Bartels, Mette Damkjær
Publication type:
Article
Within-host genomic evolution of methicillin-resistant Staphylococcus aureus in long-term carriers.
Published in:
Applied Microbiology & Biotechnology, 2024, v. 108, n. 1, p. 1, doi. 10.1007/s00253-023-12932-3
By:
- Larsen, Tine Graakjær;
- Samaniego Castruita, Jose Alfredo;
- Worning, Peder;
- Westh, Henrik;
- Bartels, Mette Damkjær
Publication type:
Article
Investigation of the introduction and dissemination of vanB Enterococcus faecium in the Capital Region of Denmark and development of a rapid and accurate clone-specific vanB E. faecium PCR.
Published in:
2021
By:
- Pinholt, Mette;
- Mollerup, Sarah;
- Boye, Kit;
- Worning, Peder;
- Holzknecht, Barbara Juliane;
- Nygaard, Sanne;
- Nielsen, Karen Leth;
- Hasman, Henrik;
- Roer, Louise;
- Hammerum, Anette M.;
- Westh, Henrik;
- Schønning, Kristian
Publication type:
journal article
WGS of 1058 Enterococcus faecium from Copenhagen, Denmark, reveals rapid clonal expansion of vancomycin-resistant clone ST80 combined with widespread dissemination of a vanA-containing plasmid and acquisition of a heterogeneous accessory genome.
Published in:
2019
By:
- Pinholt, Mette;
- Bayliss, Sion C;
- Gumpert, Heidi;
- Worning, Peder;
- Jensen, Veronika V S;
- Pedersen, Michael;
- Feil, Edward J;
- Westh, Henrik
Publication type:
journal article
Evolution of the β-lactam-resistant Streptococcus pneumoniae PMEN3 clone over a 30 year period in Barcelona, Spain.
Published in:
2018
By:
- Càmara, Jordi;
- Cubero, Meritxell;
- Tubau, Fe;
- Martín-Galiano, Antonio J;
- García, Ernesto;
- Grau, Imma;
- Pallarés, Román;
- Nielsen, Jesper B;
- Worning, Peder;
- Westh, Henrik;
- Domínguez, M Ángeles;
- Kilian, Mogens;
- Liñares, Josefina;
- Ardanuy, Carmen
Publication type:
journal article
Emergence of a vancomycin-variable Enterococcus faecium ST1421 strain containing a deletion in vanX.
Published in:
2018
By:
- Hansen, Thomas Arn;
- Pedersen, Martin Schou;
- Nielsen, Lone Gilmor;
- Ma, Chih Man German;
- Søes, Lillian Marie;
- Worning, Peder;
- Østergaard, Christian;
- Westh, Henrik;
- Pinholt, Mette;
- Schønning, Kristian
Publication type:
journal article
Genomic analysis of 495 vancomycin-resistant Enterococcus faecium reveals broad dissemination of a vanA plasmid in more than 19 clones from Copenhagen, Denmark.
Published in:
2017
By:
- Pinholt, Mette;
- Gumpert, Heidi;
- Bayliss, Sion;
- Nielsen, Jesper B.;
- Vorobieva, Veronika;
- Pedersen, Michael;
- Feil, Edward;
- Worning, Peder;
- Westh, Henrik
Publication type:
journal article
Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012-13, investigated by WGS, MLSTand PFGE.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 9, p. 2474, doi. 10.1093/jac/dkv142
By:
- Pinholt, Mette;
- Larner-Svensson, Hanna;
- Littauer, Pia;
- Moser, Claus E.;
- Pedersen, Michael;
- Lemming, Lars E.;
- Ejlertsen, Tove;
- Søndergaard, Turid S.;
- Holzknecht, Barbara J.;
- Justesen, Ulrik S.;
- Dzajic, Esad;
- Olsen, Stefan S.;
- Nielsen, Jesper B.;
- Worning, Peder;
- Hammerum, Anette M.;
- Westh, Henrik;
- Jakobsen, Lotte
Publication type:
Article
Multiple hospital outbreaks of vanA Enterococcus faecium in Denmark, 2012-13, investigated by WGS, MLSTand PFGE.
Published in:
Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 9, p. 2474, doi. 10.1093/jac/dkv142
By:
- Pinholt, Mette;
- Larner-Svensson, Hanna;
- Littauer, Pia;
- Moser, Claus E.;
- Pedersen, Michael;
- Lemming, Lars E.;
- Ejlertsen, Tove;
- Søndergaard, Turid S.;
- Holzknecht, Barbara J.;
- Justesen, Ulrik S.;
- Dzajic, Esad;
- Olsen, Stefan S.;
- Nielsen, Jesper B.;
- Worning, Peder;
- Hammerum, Anette M.;
- Westh, Henrik;
- Jakobsen, Lotte
Publication type:
Article
Evidence for the evolutionary steps leading to mecA-mediated β-lactam resistance in staphylococci.
Published in:
PLoS Genetics, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pgen.1006674
By:
- Rolo, Joana;
- Worning, Peder;
- Boye Nielsen, Jesper;
- Sobral, Rita;
- Bowden, Rory;
- Bouchami, Ons;
- Damborg, Peter;
- Guardabassi, Luca;
- Perreten, Vincent;
- Westh, Henrik;
- Tomasz, Alexander;
- de Lencastre, Hermínia;
- Miragaia, Maria
Publication type:
Article

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