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Acquisition and Long-term Carriage of Multidrug-Resistant Organisms in US International Travelers.
Published in:
Open Forum Infectious Diseases, 2020, v. 7, n. 12, p. 1, doi. 10.1093/ofid/ofaa543
By:
- Worby, Colin J;
- Earl, Ashlee M;
- Turbett, Sarah E;
- Becker, Margaret;
- Rao, Sowmya R;
- Oliver, Elizabeth;
- Walker, Allison Taylor;
- Walters, Maroya;
- Kelly, Paul;
- Leung, Daniel T;
- Knouse, Mark;
- Hagmann, Stefan H F;
- Ryan, Edward T;
- LaRocque, Regina C
Publication type:
Article
On the Role of Different Age Groups and Pertussis Vaccines During the 2012 Outbreak in Wisconsin.
Published in:
Open Forum Infectious Diseases, 2018, v. 5, n. 5, p. N.PAG, doi. 10.1093/ofid/ofy082
By:
- Goldstein, Edward;
- Worby, Colin J;
- Lipsitch, Marc
Publication type:
Article
Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States.
Published in:
2017
By:
- Andam, Cheryl P.;
- Worby, Colin J.;
- Gierke, Ryan;
- McGee, Lesley;
- Pilishvili, Tamara;
- Hanage, William P.
Publication type:
journal article
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Published in:
Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01040-y
By:
- Salamzade, Rauf;
- Manson, Abigail L.;
- Walker, Bruce J.;
- Brennan-Krohn, Thea;
- Worby, Colin J.;
- Ma, Peijun;
- He, Lorrie L.;
- Shea, Terrance P.;
- Qu, James;
- Chapman, Sinéad B.;
- Howe, Whitney;
- Young, Sarah K.;
- Wurster, Jenna I.;
- Delaney, Mary L.;
- Kanjilal, Sanjat;
- Onderdonk, Andrew B.;
- Bittencourt, Cassiana E.;
- Gussin, Gabrielle M.;
- Kim, Diane;
- Peterson, Ellena M.
Publication type:
Article
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02630-0
By:
- van Dijk, Lucas R.;
- Walker, Bruce J.;
- Straub, Timothy J.;
- Worby, Colin J.;
- Grote, Alexandra;
- Schreiber IV, Henry L.;
- Anyansi, Christine;
- Pickering, Amy J.;
- Hultgren, Scott J.;
- Manson, Abigail L.;
- Abeel, Thomas;
- Earl, Ashlee M.
Publication type:
Article
'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129745
By:
- Worby, Colin J.;
- Read, Timothy D.
Publication type:
Article
Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data.
Published in:
American Journal of Epidemiology, 2017, v. 186, n. 10, p. 1209, doi. 10.1093/aje/kwx182
By:
- Worby, Colin J.;
- Lipsitch, Marc;
- Hanage, William P.
Publication type:
Article
Estimating the Effectiveness of Isolation and Decolonization Measures in Reducing Transmission of Methicillin-resistant Staphylococcus aureus in Hospital General Wards.
Published in:
American Journal of Epidemiology, 2013, v. 177, n. 11, p. 1306, doi. 10.1093/aje/kws380
By:
- Worby, Colin J.;
- Jeyaratnam, Dakshika;
- Robotham, Julie V.;
- Kypraios, Theodore;
- O'neill, Philip D.;
- De Angelis, Daniela;
- French, Gary;
- Cooper, Ben S.
Publication type:
Article
Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data.
Published in:
PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003549
By:
- Worby, Colin J.;
- Lipsitch, Marc;
- Hanage, William P.
Publication type:
Article
Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
Published in:
Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad050
By:
- Yorki, Sosie;
- Shea, Terrance;
- Cuomo, Christina A;
- Walker, Bruce J;
- LaRocque, Regina C;
- Manson, Abigail L;
- Earl, Ashlee M;
- Worby, Colin J
Publication type:
Article
More Research Is Needed to Quantify Risks, Benefits, and Cost-Effectiveness of Universal Mupirocin Usage.
Published in:
2016
By:
- Deeny, Sarah R.;
- Worby, Colin J.;
- Auguet, Olga Tosas;
- Cooper, Ben S.;
- Edgeworth, Jonathan;
- Cookson, Barry;
- Robotham, Julie V.
Publication type:
Letter to the Editor
Clinical and Genomic Characterization of a Cohort of Patients With Klebsiella pneumoniae Bloodstream Infection.
Published in:
Clinical Infectious Diseases, 2024, v. 78, n. 1, p. 31, doi. 10.1093/cid/ciad507
By:
- Roach, David J;
- Sridhar, Sushmita;
- Oliver, Elizabeth;
- Rao, Sowmya R;
- Slater, Damien M;
- Hwang, Wontae;
- Vater, Kian Hutt;
- Dinesh, Anupama;
- Qadri, Firdausi;
- Chisti, Mohammod J;
- Pierce, Virginia M;
- Turbett, Sarah E;
- Bhattacharyya, Roby P;
- Worby, Colin J;
- Earl, Ashlee M;
- LaRocque, Regina C;
- Harris, Jason B
Publication type:
Article
THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.
Published in:
2017
By:
- Chang, Hsiao-Han;
- Worby, Colin J.;
- Yeka, Adoke;
- Nankabirwa, Joaniter;
- Kamya, Moses R.;
- Staedke, Sarah G.;
- Dorsey, Grant;
- Murphy, Maxwell;
- Neafsey, Daniel E.;
- Jeffreys, Anna E.;
- Hubbart, Christina;
- Rockett, Kirk A.;
- Amato, Roberto;
- Kwiatkowski, Dominic P.;
- Buckee, Caroline;
- Greenhouse, Bryan
Publication type:
Product Review
The Distribution of Pairwise Genetic Distances: A Tool for Investigating Disease Transmission.
Published in:
Genetics, 2014, v. 198, n. 4, p. 1395, doi. 10.1534/genetics.114.171538
By:
- Worby, Colin J.;
- Chang, Hsiao-Han;
- Hanage, William P.;
- Lipsitch, Marc
Publication type:
Article
Examining the role of different age groups, and of vaccination during the 2012 Minnesota pertussis outbreak.
Published in:
Scientific Reports, 2015, p. 13182, doi. 10.1038/srep13182
By:
- Worby, Colin J.;
- Kenyon, Cynthia;
- Lynfield, Ruth;
- Lipsitch, Marc;
- Goldstein, Edward
Publication type:
Article
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
Published in:
Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0274-3
By:
- Hsiao-Han Chang;
- Dordel, Janina;
- Donker, Tjibbe;
- Worby, Colin J.;
- Feil, Edward J.;
- Hanage, William P.;
- Bentley, Stephen D.;
- Huang, Susan S.;
- Lipsitch, Marc
Publication type:
Article
On the Relative Role of Different Age Groups During Epidemics Associated With Respiratory Syncytial Virus.
Published in:
2018
By:
- Goldstein, Edward;
- Nguyen, Hieu H.;
- Liu, Patrick;
- Viboud, Cecile;
- Steiner, Claudia A.;
- Worby, Colin J.;
- Lipsitch, Marc
Publication type:
journal article
Model diagnostics and refinement for phylodynamic models.
Published in:
PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006955
By:
- Lau, Max SY;
- Grenfell, Bryan T;
- Worby, Colin J;
- Gibson, Gavin J
Publication type:
Article
Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA.
Published in:
2015
By:
- Deeny, Sarah R.;
- Worby, Colin J.;
- Auguet, Olga Tosas;
- Cooper, Ben S.;
- Edgeworth, Jonathan;
- Cookson, Barry;
- Robotham, Julie V.;
- Tosas Auguet, Olga
Publication type:
journal article
Face mask use in the general population and optimal resource allocation during the COVID-19 pandemic.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17922-x
By:
- Worby, Colin J.;
- Chang, Hsiao-Han
Publication type:
Article
Bayesian reconstruction of transmission within outbreaks using genomic variants.
Published in:
PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006117
By:
- De Maio, Nicola;
- Stoesser, Nicole;
- Wilson, Daniel J.;
- Worby, Colin J.
Publication type:
Article

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