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CC<sup>+</sup>: A searchable database of validated coiled coils in PDB structures and AlphaFold2 models.
- Published in:
- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 11, p. 1, doi. 10.1002/pro.4789
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- Article
X‐ray structure of the metastable SEPT14–SEPT7 coiled coil reveals a hendecad region crucial for heterodimerization.
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- Acta Crystallographica: Section D, Structural Biology, 2023, v. 79, n. 10, p. 881, doi. 10.1107/S2059798323006514
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- Article
Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 19, p. 14616, doi. 10.3390/ijms241914616
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- Article
Differential sensing with arrays of de novo designed peptide assemblies.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36024-y
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- Article
Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures.
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- Bioinformatics, 2021, v. 37, n. 23, p. 4575, doi. 10.1093/bioinformatics/btab631
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- Article
De Novo Designed Peptide and Protein Hairpins Self‐Assemble into Sheets and Nanoparticles.
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- Small, 2021, v. 17, n. 10, p. 1, doi. 10.1002/smll.202100472
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Structural resolution of switchable states of a de novo peptide assembly.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21851-8
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De novo design of a reversible phosphorylation-dependent switch for membrane targeting.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21622-5
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BAlaS: fast, interactive and accessible computational alanine-scanning using BudeAlaScan.
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- Bioinformatics, 2020, v. 36, n. 9, p. 2917, doi. 10.1093/bioinformatics/btaa026
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- Article
Effect of metabolosome encapsulation peptides on enzyme activity, coaggregation, incorporation, and bacterial microcompartment formation.
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- MicrobiologyOpen, 2020, v. 9, n. 5, p. 1, doi. 10.1002/mbo3.1010
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A Modular Vaccine Platform Combining Self‐Assembled Peptide Cages and Immunogenic Peptides.
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- Advanced Functional Materials, 2019, v. 29, n. 8, p. N.PAG, doi. 10.1002/adfm.201807357
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- Article
Maintaining and breaking symmetry in homomeric coiled-coil assemblies.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06391-y
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- Article
Applying graph theory to protein structures: an Atlas of coiled coils.
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- Bioinformatics, 2018, v. 34, n. 19, p. 3316, doi. 10.1093/bioinformatics/bty347
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- Article
De novo targeting to the cytoplasmic and luminal side of bacterial microcompartments.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05922-x
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- Article
Hydra Mesoglea Proteome Identifies Thrombospondin as a Conserved Component Active in Head Organizer Restriction.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30035-2
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- Article
C CBuilder 2.0: Powerful and accessible coiled-coil modeling.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 103, doi. 10.1002/pro.3279
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ISAMBARD: an open-source computational environment for biomolecular analysis, modelling and design.
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- Bioinformatics, 2017, v. 33, n. 19, p. 3043, doi. 10.1093/bioinformatics/btx352
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Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability.
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- Scientific Reports, 2017, p. 44341, doi. 10.1038/srep44341
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- Article
BrisSynBio: a BBSRC/EPSRC-funded Synthetic Biology Research Centre.
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- Biochemical Society Transactions, 2016, v. 44, n. 3, p. 689, doi. 10.1042/BST20160004
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- Article
On the satisfaction of backbone-carbonyl lone pairs of electrons in protein structures.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 4, p. 887, doi. 10.1002/pro.2896
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- Article
Controlling the Assembly of Coiled-Coil Peptide Nanotubes.
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- Angewandte Chemie, 2016, v. 128, n. 3, p. 999, doi. 10.1002/ange.201509304
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Controlling the Assembly of Coiled-Coil Peptide Nanotubes.
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- Angewandte Chemie International Edition, 2016, v. 55, n. 3, p. 987, doi. 10.1002/anie.201509304
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- Article
Corrigendum: Local and macroscopic electrostatic interactions in single α-helices.
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- Nature Chemical Biology, 2015, v. 11, n. 9, p. 741, doi. 10.1038/nchembio0915-741e
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- Article
Local and macroscopic electrostatic interactions in single α-helices.
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- Nature Chemical Biology, 2015, v. 11, n. 3, p. 221, doi. 10.1038/nchembio.1739
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CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
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- Bioinformatics, 2014, v. 30, n. 21, p. 3029, doi. 10.1093/bioinformatics/btu502
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- Article
Assessing Cellular Response to Functionalized α-Helical Peptide Hydrogels.
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- Advanced Healthcare Materials, 2014, v. 3, n. 9, p. 1387, doi. 10.1002/adhm.201400065
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- Article
Signatures of n→π* interactions in proteins.
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- Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 3, p. 284, doi. 10.1002/pro.2413
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LOGICOIL—multi-state prediction of coiled-coil oligomeric state.
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- Bioinformatics, 2013, v. 29, n. 1, p. 69, doi. 10.1093/bioinformatics/bts648
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- Article
Metallopolymer-Peptide Hybrid Materials: Synthesis and Self-Assembly of Functional, Polyferrocenylsilane-Tetrapeptide Conjugates.
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- Chemistry - A European Journal, 2012, v. 18, n. 9, p. 2524, doi. 10.1002/chem.201102223
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Design and Construction of a One-Dimensional DNA Track for an Artificial Molecular Motor.
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- Journal of Nanomaterials, 2012, p. 1, doi. 10.1155/2012/109238
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- Article
A de novo peptide hexamer with a mutable channel.
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- Nature Chemical Biology, 2011, v. 7, n. 12, p. 935, doi. 10.1038/nchembio.692
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- Article
Random-Coil:α-Helix Equilibria as a Reporter for the Lewis<sup>X</sup>-Lewis<sup>X</sup> Interaction.
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- Angewandte Chemie, 2011, v. 123, n. 47, p. 11363, doi. 10.1002/ange.201101055
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- Article
Random-Coil:α-Helix Equilibria as a Reporter for the Lewis<sup>X</sup>-Lewis<sup>X</sup> Interaction.
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- Angewandte Chemie International Edition, 2011, v. 50, n. 47, p. 11167, doi. 10.1002/anie.201101055
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- Article
SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences.
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- Bioinformatics, 2011, v. 27, n. 14, p. 1908, doi. 10.1093/bioinformatics/btr299
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- Article
Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a Gram-negative bacterium.
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- Nucleic Acids Research, 2011, v. 39, n. 9, p. 3917, doi. 10.1093/nar/gkq1296
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Building fibrous biomaterials from α-helical and collagen-like coiled-coil peptides.
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- Biopolymers, 2010, v. 94, n. 1, p. 118, doi. 10.1002/bip.21345
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n→π* interactions in proteins.
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- Nature Chemical Biology, 2010, v. 6, n. 8, p. 615, doi. 10.1038/nchembio.406
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- Article
Rational design and application of responsive α-helical peptide hydrogels.
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- Nature Materials, 2009, v. 8, n. 7, p. 596, doi. 10.1038/nmat2479
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- Article
CC+: a relational database of coiled-coil structures.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D315, doi. 10.1093/nar/gkn675
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- Article
Protein-Small Molecule Interactions in Neocarzinostatin, the Prototypical Enediyne Chromoprotein Antibiotic.
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- ChemBioChem, 2007, v. 8, n. 7, p. 704, doi. 10.1002/cbic.200600534
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Polar Assembly in a Designed Protein FiberWe thank the EPSRC for studentships to A.M.S. and S.F.A.A., and the BBSRC for a studentship to M.S.P.S. and grant support (reference B10280).
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- Angewandte Chemie International Edition, 2005, v. 44, n. 2, p. 325, doi. 10.1002/anie.200461599
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- Article
Polar Assembly in a Designed Protein Fiber.
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- Angewandte Chemie, 2005, v. 117, n. 2, p. 329, doi. 10.1002/ange.200461599
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Introducing Branches into a Self-Assembling Peptide Fiber ( We thank Dave Randall for recording the SEM images, members of the DNW group for discussions and the BBSRC of the UK for financial support (grant E13753). ).
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- Angewandte Chemie, 2003, v. 115, n. 26, p. 3129, doi. 10.1002/ange.200351418
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- Article
Introducing Branches into a Self-Assembling Peptide Fiber ( We thank Dave Randall for recording the SEM images, members of the DNW group for discussions and the BBSRC of the UK for financial support (grant E13753). ).
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- Angewandte Chemie International Edition, 2003, v. 42, n. 26, p. 3021, doi. 10.1002/anie.200351418
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- Article
Mini-proteins Trp the light fantastic.
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- Nature Structural Biology, 2002, v. 9, n. 6, p. 408, doi. 10.1038/nsb0602-408
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Open-and-shut cases in coiled-coil assembly: α-sheets and α-cylinders.
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- Protein Science: A Publication of the Protein Society, 2001, v. 10, n. 3, p. 668, doi. 10.1110/ps.36901
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- Article
Regulation of Hsp90 ATPase activity by tetratricopeptide repeat (TPR)-domain co-chaperones.
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- EMBO Journal, 1999, v. 18, n. 3, p. 754, doi. 10.1093/emboj/18.3.754
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- Article
Determinants of strand register in antiparallel β-sheets of proteins.
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- Protein Science: A Publication of the Protein Society, 1998, v. 7, n. 11, p. 2287, doi. 10.1002/pro.5560071106
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Hydrophobic clustering in nonnative states of a protein: Interpretation of chemical shifts in NMR spectra of denatured states of lysozyme.
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- Proteins, 1991, v. 9, n. 4, p. 248, doi. 10.1002/prot.340090404
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- Article